HHsearch alignment for GI: 254781187 and conserved domain: COG5525
>COG5525 Bacteriophage tail assembly protein [General function prediction only].
Probab=90.92 E-value=0.21 Score=27.64 Aligned_cols=152 Identities=12% Similarity=0.080 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 28999999988887512455555411247761488678899999999999970899779997153799999999999999
Q gi|254781187|r 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 (367)
Q Consensus 52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~ 131 (367)
T Consensus 49 ~p~~~~~~n~~----------~~~~~~~V~f~k~ArvG~T~m~~gw~~Y~I~~~p-~~mlv~qpt~~~a~~~~k~k~~pt 117 (611)
T COG5525 49 LPFQIAIMNAM----------GSDEIRAVNFVKSARVGKTKMLLGWIGYFIEHKP-RNMLVVQPTDEKAREHSKTKVEPT 117 (611)
T ss_pred CHHHHHHHHCC----------CCCCCEEEEEEECCCCCCEEEECCEEEEEEEECC-CCCEEECCCHHHHHHHHHHHCCCC
T ss_conf 26899987536----------9864168999740203622454225899998657-652333365557799888750750
Q ss_pred HHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH-
Q ss_conf 986231-211233332100012333221111345776126621013544556521011358628999754559988999-
Q gi|254781187|r 132 LSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK- 209 (367)
Q Consensus 132 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e- 209 (367)
T Consensus 118 i~~~p~l~~~---------ls~~~~dNn~~~K~f~~G~~l~~g~-------~s~~~~r~~s~~~v~lde~d~fpedv~~E 181 (611)
T COG5525 118 IRDVPSLVSL---------LSPSRNDNNLTDKRFPGGVFLMIGW-------KSAKNYRSISVDVVVLDELDRFPEDVEGE 181 (611)
T ss_pred HHCCHHHHHH---------CCCCCCCCCEECCCCCCCEEEEECC-------CCCCCCCCCCHHHHHHHHHHCCCHHHCCC
T ss_conf 2006337865---------2765678731102334772797256-------54565667644565666774365122268
Q ss_pred -----HHHHHHHCCCCCEEEEEEECCC
Q ss_conf -----9898740698825899980789
Q gi|254781187|r 210 -----SILGFFTELNPNRFWIMTSNTR 231 (367)
Q Consensus 210 -----~i~g~Lt~~~~~~~~i~igNP~ 231 (367)
T Consensus 182 Gs~~sl~~kR~~t-~~~~~~l~~stP~ 207 (611)
T COG5525 182 GSATSLASKRITT-MSWGKSLVESTPT 207 (611)
T ss_pred CCHHHHHHHHHCC-CCCCCEEEECCCC
T ss_conf 8876778876024-5566224413787