HHsearch alignment for GI: 254781187 and conserved domain: PHA00149
>PHA00149 DNA encapsidation protein.
Probab=93.62 E-value=0.51 Score=25.23 Aligned_cols=143 Identities=20% Similarity=0.241 Sum_probs=76.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1247761488678899999999999970899779997153799999--99999999998623121123333210001233
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~--~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~ 154 (367)
T Consensus 18 ~l~fvi-G~RgiGKTya~k~~~~k~~i~k-geqfiyLRr~k~El~~k~~Ff~d~---~~~~~~-~ef~V----------- 80 (331)
T PHA00149 18 ILNFVI-GARGIGKTYALKKYLIKRFIKK-GEQFIYLRRYKSELKKKSKFFADI---AQEFPN-TEFEV----------- 80 (331)
T ss_pred EEEEEE-ECCCCCHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHHHHHHHH---HHHCCC-CCEEE-----------
T ss_conf 469998-2465440357778899999862-967999993243452021056789---975789-74599-----------
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECC-------CCCCHHHH---HHHHHHHHCCCCCEEE
Q ss_conf 3221111345776126621013544556521011358628999754-------55998899---9989874069882589
Q gi|254781187|r 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-------SGTPDIIN---KSILGFFTELNPNRFW 224 (367)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEA-------sgI~d~i~---e~i~g~Lt~~~~~~~~ 224 (367)
T Consensus 81 -k~~ki~~~~k~igy~i~lS-----~~q~~Ks~~Yp~V~~I~fDEfi~~k~n~~Ylpne~~allnli~tV~R~R-e~i~~ 153 (331)
T PHA00149 81 -KGRKIYIKGKLIGYAIPLS-----TWQALKSSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRAR-ERVRC 153 (331)
T ss_pred -EEEEEEECCEEEEEEEEHH-----HHHHHCCCCCCCEEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH-CCEEE
T ss_conf -7008998680799997044-----6776325689955899712233305433568850899999999987753-57599
Q ss_pred EEEECCCCCCCHHHHHHHC
Q ss_conf 9980789998768875411
Q gi|254781187|r 225 IMTSNTRRLNGWFYDIFNI 243 (367)
Q Consensus 225 i~igNP~r~~g~Fye~~~~ 243 (367)
T Consensus 154 ~~lsNa~~~~NPyF~yf~~ 172 (331)
T PHA00149 154 ICLSNAVSIVNPYFLYFGL 172 (331)
T ss_pred EEECCCCCCCCCHHHEEEE
T ss_conf 9975854303604423421