HHsearch alignment for GI: 254781187 and conserved domain: PHA00149

>PHA00149 DNA encapsidation protein.
Probab=93.62  E-value=0.51  Score=25.23  Aligned_cols=143  Identities=20%  Similarity=0.241  Sum_probs=76.1

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1247761488678899999999999970899779997153799999--99999999998623121123333210001233
Q gi|254781187|r   77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY  154 (367)
Q Consensus        77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~--~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~  154 (367)
T Consensus        18 ~l~fvi-G~RgiGKTya~k~~~~k~~i~k-geqfiyLRr~k~El~~k~~Ff~d~---~~~~~~-~ef~V-----------   80 (331)
T PHA00149         18 ILNFVI-GARGIGKTYALKKYLIKRFIKK-GEQFIYLRRYKSELKKKSKFFADI---AQEFPN-TEFEV-----------   80 (331)
T ss_pred             EEEEEE-ECCCCCHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHHHHHHHH---HHHCCC-CCEEE-----------
T ss_conf             469998-2465440357778899999862-967999993243452021056789---975789-74599-----------


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECC-------CCCCHHHH---HHHHHHHHCCCCCEEE
Q ss_conf             3221111345776126621013544556521011358628999754-------55998899---9989874069882589
Q gi|254781187|r  155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-------SGTPDIIN---KSILGFFTELNPNRFW  224 (367)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEA-------sgI~d~i~---e~i~g~Lt~~~~~~~~  224 (367)
T Consensus        81 -k~~ki~~~~k~igy~i~lS-----~~q~~Ks~~Yp~V~~I~fDEfi~~k~n~~Ylpne~~allnli~tV~R~R-e~i~~  153 (331)
T PHA00149         81 -KGRKIYIKGKLIGYAIPLS-----TWQALKSSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRAR-ERVRC  153 (331)
T ss_pred             -EEEEEEECCEEEEEEEEHH-----HHHHHCCCCCCCEEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH-CCEEE
T ss_conf             -7008998680799997044-----6776325689955899712233305433568850899999999987753-57599


Q ss_pred             EEEECCCCCCCHHHHHHHC
Q ss_conf             9980789998768875411
Q gi|254781187|r  225 IMTSNTRRLNGWFYDIFNI  243 (367)
Q Consensus       225 i~igNP~r~~g~Fye~~~~  243 (367)
T Consensus       154 ~~lsNa~~~~NPyF~yf~~  172 (331)
T PHA00149        154 ICLSNAVSIVNPYFLYFGL  172 (331)
T ss_pred             EEECCCCCCCCCHHHEEEE
T ss_conf             9975854303604423421