HHsearch alignment for GI: 254781187 and conserved domain: PRK00440

>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=97.07  E-value=0.022  Score=33.55  Aligned_cols=119  Identities=16%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-CCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999988887512455555411247761488678899999999999970899779997-15379999999999999998
Q gi|254781187|r   55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI-ANSETQLKNTLWAEVSKWLS  133 (367)
Q Consensus        55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~-A~t~~Q~~~~lw~ei~k~~~  133 (367)
T Consensus        21 ~~~~~~~L~~~i~~~~---~p---hlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id-~vr~~i~~~~~   93 (318)
T PRK00440         21 QEEIVERLKSFVKEKN---MP---HLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGID-VIRNKIKEFAR   93 (318)
T ss_pred             CHHHHHHHHHHHHCCC---CC---EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHH-HHHHHHHHHHH
T ss_conf             6999999999998799---86---69888959988999999999997698643476895164566717-89999999997


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             62312112333321000123332211113457761266210135445565210113586289997545599889999898
Q gi|254781187|r  134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG  213 (367)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g  213 (367)
T Consensus        94 ~~~-----------------------------------------------~~---~~~~kiiiiDE~d~l~~~aq~aL~~  123 (318)
T PRK00440         94 TAP-----------------------------------------------VG---GAPFKIIFLDEADNLTSDAQQALRR  123 (318)
T ss_pred             HCC-----------------------------------------------CC---CCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf             267-----------------------------------------------78---9973899986855322556788876


Q ss_pred             HHHCCCCCEEEEEEECC
Q ss_conf             74069882589998078
Q gi|254781187|r  214 FFTELNPNRFWIMTSNT  230 (367)
Q Consensus       214 ~Lt~~~~~~~~i~igNP  230 (367)
T Consensus       124 ~mE~~~~~~~fil~~n~  140 (318)
T PRK00440        124 TMEMYSQTTRFILSCNY  140 (318)
T ss_pred             HHHCCCCCCEEEEECCC
T ss_conf             43105666258863488