HHsearch alignment for GI: 254781187 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=97.07 E-value=0.022 Score=33.55 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999988887512455555411247761488678899999999999970899779997-15379999999999999998
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI-ANSETQLKNTLWAEVSKWLS 133 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~-A~t~~Q~~~~lw~ei~k~~~ 133 (367)
T Consensus 21 ~~~~~~~L~~~i~~~~---~p---hlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id-~vr~~i~~~~~ 93 (318)
T PRK00440 21 QEEIVERLKSFVKEKN---MP---HLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGID-VIRNKIKEFAR 93 (318)
T ss_pred CHHHHHHHHHHHHCCC---CC---EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHH-HHHHHHHHHHH
T ss_conf 6999999999998799---86---69888959988999999999997698643476895164566717-89999999997
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 62312112333321000123332211113457761266210135445565210113586289997545599889999898
Q gi|254781187|r 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 (367)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g 213 (367)
T Consensus 94 ~~~-----------------------------------------------~~---~~~~kiiiiDE~d~l~~~aq~aL~~ 123 (318)
T PRK00440 94 TAP-----------------------------------------------VG---GAPFKIIFLDEADNLTSDAQQALRR 123 (318)
T ss_pred HCC-----------------------------------------------CC---CCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 267-----------------------------------------------78---9973899986855322556788876
Q ss_pred HHHCCCCCEEEEEEECC
Q ss_conf 74069882589998078
Q gi|254781187|r 214 FFTELNPNRFWIMTSNT 230 (367)
Q Consensus 214 ~Lt~~~~~~~~i~igNP 230 (367)
T Consensus 124 ~mE~~~~~~~fil~~n~ 140 (318)
T PRK00440 124 TMEMYSQTTRFILSCNY 140 (318)
T ss_pred HHHCCCCCCEEEEECCC
T ss_conf 43105666258863488