HHsearch alignment for GI: 254781187 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=97.86 E-value=0.00017 Score=46.51 Aligned_cols=76 Identities=14% Similarity=0.031 Sum_probs=54.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC--------CEEEEECCC
Q ss_conf 436668428999999988887512455555411247761488678899999999999970899--------779997153
Q gi|254781187|r 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--------MSIICIANS 116 (367)
Q Consensus 45 ~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~--------~~v~~~A~t 116 (367)
T Consensus 26 ~~g~~~pTpIQ~~aIP~il~G~------------Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLIL~PT 93 (423)
T PRK04837 26 KKGFEYCTPIQALALPLTLAGR------------DVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALIMAPT 93 (423)
T ss_pred HCCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC
T ss_conf 7799999999999999996799------------8899899987499999999999998374533455678618999388
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999998
Q gi|254781187|r 117 ETQLKNTLWAEVSKWLS 133 (367)
Q Consensus 117 ~~Q~~~~lw~ei~k~~~ 133 (367)
T Consensus 94 RELa~Qi-~~~~~~l~~ 109 (423)
T PRK04837 94 RELAVQI-HADAEPLAQ 109 (423)
T ss_pred HHHHHHH-HHHHHHHHC
T ss_conf 9999999-999999743