HHsearch alignment for GI: 254781187 and conserved domain: PRK05563
>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.28 E-value=0.0089 Score=35.99 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999998888751245555541124776148867889999999999997089977999715379999999999999998
Q gi|254781187|r 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~ 133 (367)
T Consensus 20 gQ~~v~~~L~n~i~~~~i~-ha----yLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~-----~-C~~C-~~i~~--- 84 (541)
T PRK05563 20 GQEHITTTLKNQIINNRIA-HA----YLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCN-----E-CEIC-KKINE--- 84 (541)
T ss_pred CCHHHHHHHHHHHHCCCCC-EE----EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-----C-CHHH-HHHHC---
T ss_conf 8499999999999849932-04----5303879958999999999995799988898575-----1-4889-99856---
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 62312112333321000123332211113457761266210135445565210113586289997545599889999898
Q gi|254781187|r 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 (367)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g 213 (367)
T Consensus 85 ----g~--------------~~Dv~E--idaas~~gvd~iR~~~~~~--~~~p~~~~~-Kv~IiDEvhmls~~a~nallK 141 (541)
T PRK05563 85 ----GL--------------LMDVIE--IDAASNNGVDDIREIIENV--KYPPQEGKY-KVYIMDEVHMLSQGAVNAFLK 141 (541)
T ss_pred ----CC--------------CCCEEE--ECCCCCCCHHHHHHHHHHC--EECCCCCCE-EEEEEECCCCCCHHHHHHHHH
T ss_conf ----89--------------887366--2444447889999999761--048767870-599997723389999999999
Q ss_pred HHHCCCCCEEEEEE
Q ss_conf 74069882589998
Q gi|254781187|r 214 FFTELNPNRFWIMT 227 (367)
Q Consensus 214 ~Lt~~~~~~~~i~i 227 (367)
T Consensus 142 tlEePp~~~~Fila 155 (541)
T PRK05563 142 TLEEPPSNVIFILA 155 (541)
T ss_pred HHHCCCCCCEEEEE
T ss_conf 98548777569997