HHsearch alignment for GI: 254781187 and conserved domain: PRK05648
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed.
Probab=95.26 E-value=0.19 Score=27.83 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999998888751245555541124776148867889999999999997089977999715379999999999999998
Q gi|254781187|r 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~ 133 (367)
T Consensus 20 gq~~~~~~l~~~~~~~~~~-~a----~l~~g~rg~gkt~~ar~~ak~lnc-~~~~~~---~pc~-~-c~~-c~~i~~--- 84 (705)
T PRK05648 20 GQTHVLKALINALDNQRLH-HA----YLFTGTRGVGKTTIARIIAKCLNC-ETGVSS---TPCG-E-CSV-CREIDE--- 84 (705)
T ss_pred CHHHHHHHHHHHHHCCCCC-CE----EEEECCCCCCHHHHHHHHHHHHCC-CCCCCC---CCCC-C-CHH-HHHHHC---
T ss_conf 8199999999999709863-04----650078988898999999998677-899988---9787-7-600-466624---
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 62312112333321000123332211113457761266210135445565210113586289997545599889999898
Q gi|254781187|r 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 (367)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g 213 (367)
T Consensus 85 ------------------~~~~d~~e~d--~as~~~v~~~r~~~~~--~~~~p~~~~~k-v~~idevhmls~~~fnallk 141 (705)
T PRK05648 85 ------------------GRFVDLIEVD--AASRTKVEDTRELLDN--VQYAPTRGRYK-VYLIDEVHMLSSHSFNALLK 141 (705)
T ss_pred ------------------CCCCCEEEEC--CCCCCCHHHHHHHHHH--CCCCCCCCCEE-EEEEEHHHHCCHHHHHHHHH
T ss_conf ------------------8977634451--5544788999999985--55177677457-99984265417999999987
Q ss_pred HHHCCCCCEEEEE
Q ss_conf 7406988258999
Q gi|254781187|r 214 FFTELNPNRFWIM 226 (367)
Q Consensus 214 ~Lt~~~~~~~~i~ 226 (367)
T Consensus 142 tleepp~~v~f~~ 154 (705)
T PRK05648 142 TLEEPPPHVKFLL 154 (705)
T ss_pred HCCCCCCCEEEEE
T ss_conf 4047975459998