HHsearch alignment for GI: 254781187 and conserved domain: PRK06872
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=95.98 E-value=0.067 Score=30.62 Aligned_cols=135 Identities=15% Similarity=0.140 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999998888751245555541124776148867889999999999997089977999715379999999999999998
Q gi|254781187|r 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~ 133 (367)
T Consensus 20 gq~~v~~~l~~a~~~~r~~-ha----ylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~------c~~-c~~i~~--- 84 (696)
T PRK06872 20 GQEHILTALSNGLKENRLH-HA----YLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGE------CEN-CKAIEE--- 84 (696)
T ss_pred CCHHHHHHHHHHHHCCCCC-CE----EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC------CHH-HHHHHC---
T ss_conf 8599999999999719863-04----75117898888899999999867899999997888------622-576744---
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 62312112333321000123332211113457761266210135445565210113586289997545599889999898
Q gi|254781187|r 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 (367)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g 213 (367)
T Consensus 85 ------------------g~~~d~~e--idaas~~~v~~~r~l~~~--~~~~p~~~~~k-vy~idevhmls~~~fnallk 141 (696)
T PRK06872 85 ------------------GNFIDLIE--IDAASRTKVEDTRELLDN--VQYKPVVGRFK-VYLIDEVHMLSRHSFNALLK 141 (696)
T ss_pred ------------------CCCCCEEE--EECCCCCCHHHHHHHHHH--CCCCCCCCCEE-EEEEEHHHHCCHHHHHHHHH
T ss_conf ------------------78775467--505655788999999984--54577677547-99970054438999999987
Q ss_pred HHHCCCCCEEEEE
Q ss_conf 7406988258999
Q gi|254781187|r 214 FFTELNPNRFWIM 226 (367)
Q Consensus 214 ~Lt~~~~~~~~i~ 226 (367)
T Consensus 142 tleepp~~v~f~l 154 (696)
T PRK06872 142 TLEEPPEYVKFLL 154 (696)
T ss_pred HHCCCCCCEEEEE
T ss_conf 5027975448998