HHsearch alignment for GI: 254781187 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=97.30 E-value=0.0096 Score=35.79 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=78.2
Q ss_pred CCCCCCCHH-----HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE--EEECCCH
Q ss_conf 436668428-----999999988887512455555411247761488678899999999999970899779--9971537
Q gi|254781187|r 45 LEHFSQPHR-----WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANSE 117 (367)
Q Consensus 45 ~~~~~~p~~-----wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v--~~~A~t~ 117 (367)
T Consensus 13 ~~g~p~Pr~~~~liGq~~~~~~L~~a~~~gRl~H-----A~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~ 87 (352)
T PRK09112 13 IDGVPSPSENNRLFGHEEARAFLAQAYREGRLHH-----ALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDP 87 (352)
T ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCC-----EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 8999896446462786999999999998499652-----46535899808999999999998669986668655678887
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 999999999999999862312112333321000123332--211113457761266210135445565210113586289
Q gi|254781187|r 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE--LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 (367)
Q Consensus 118 ~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ 195 (367)
T Consensus 88 ~---~~~~r~i~~--g~hpd--l~~i~------r~~d~k~~~~~~~I~vd~------iR~l~~--~~~~~~~~~~~-kv~ 145 (352)
T PRK09112 88 A---SPLWRQIAQ--GAHPN--LLHLT------RPFDEKTGKFKTAITVDE------IRRVTH--FLSQTSGDGNW-RIV 145 (352)
T ss_pred C---CHHHHHHHC--CCCCC--EEEEE------CCCCHHHHHHHCCCCHHH------HHHHHH--HHCCCCCCCCE-EEE
T ss_conf 8---778999974--89999--56553------432202145433577799------999999--84548866880-699
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 99754559988999989874069882589998078
Q gi|254781187|r 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 (367)
Q Consensus 196 ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP 230 (367)
T Consensus 146 Iid~ad~m~~~aaNALLK~LEEPp~~~~fiLit~~ 180 (352)
T PRK09112 146 IIDPADDMNRNAANAILKTLEEPPARALFILISHS 180 (352)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 98187874699999999985348987489988699