HHsearch alignment for GI: 254781187 and conserved domain: PRK10875
>PRK10875 recD exonuclease V subunit alpha; Provisional.
Probab=98.45 E-value=1.6e-05 Score=52.92 Aligned_cols=156 Identities=20% Similarity=0.154 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEE-EEECCCCCCHHHHHHHHHHHH--HHHCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 28999999988887512455555411247-761488678899999999999--970899779997153799999999999
Q gi|254781187|r 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICIANSETQLKNTLWAEV 128 (367)
Q Consensus 52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~-~v~sgrg~GKS~~~a~~~lw~--~~~~~~~~v~~~A~t~~Q~~~~lw~ei 128 (367)
T Consensus 149 ~dwQk~A~a~---Al~~----------~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaAPTGKAAaRL~-Esi 214 (607)
T PRK10875 149 VNWQKVAAAV---ALTR----------RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLT-ESL 214 (607)
T ss_pred CCHHHHHHHH---HHHC----------CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH-HHH
T ss_conf 5189999999---8755----------7789967999877889999999999964589970899882289999999-999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 99998623121123333210001233322111134577612662101354455652101135862899975455998899
Q gi|254781187|r 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 (367)
Q Consensus 129 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~ 208 (367)
T Consensus 215 ~~~~~~l~~~~~~------~~~~p~~a~TiHRLLg~~p~~~~---f~~~~~nPL--------~~DvlIVDEASMVDl~Lm 277 (607)
T PRK10875 215 GKALRQLPLTDEQ------KKRIPEDASTLHRLLGAQPGSQR---LRYHAGNPL--------HLDVLVVDEASMIDLPMM 277 (607)
T ss_pred HHHHHHCCCCHHH------HHCCCCCCEEHHHHCCCCCCCCC---CCCCCCCCC--------CCCEEEEECCHHHHHHHH
T ss_conf 8787534766566------63376556658975296789876---565779999--------889899907336659999
Q ss_pred HHHHHHHHCCCCCEEEEEEECCC-----CCCCHHHHHH
Q ss_conf 99898740698825899980789-----9987688754
Q gi|254781187|r 209 KSILGFFTELNPNRFWIMTSNTR-----RLNGWFYDIF 241 (367)
Q Consensus 209 e~i~g~Lt~~~~~~~~i~igNP~-----r~~g~Fye~~ 241 (367)
T Consensus 278 ~~LL~Alp~-~aRL--ILvGD~dQLpSVgaGaVL~DL~ 312 (607)
T PRK10875 278 SRLIDALPD-HARV--IFLGDRDQLASVEAGAVLGDIC 312 (607)
T ss_pred HHHHHHCCC-CCEE--EEECCHHHCCCCCCCCCHHHHH
T ss_conf 999982899-9889--9965623247888882179999