HHsearch alignment for GI: 254781187 and conserved domain: PRK11192

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=97.89  E-value=0.00049  Score=43.74  Aligned_cols=75  Identities=15%  Similarity=0.079  Sum_probs=53.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH----CC-CCEEEEECCCHHHH
Q ss_conf             36668428999999988887512455555411247761488678899999999999970----89-97799971537999
Q gi|254781187|r   46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST----RP-GMSIICIANSETQL  120 (367)
Q Consensus        46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~----~~-~~~v~~~A~t~~Q~  120 (367)
T Consensus        21 ~g~~~pT~IQ~~aIp~il~g~------------dvl~~A~TGSGKTlaylLPil~~l~~~~~~~~~~~~~LIl~PTrELa   88 (417)
T PRK11192         21 KGYTRPTAIQAEAIPPALDGR------------DVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELA   88 (417)
T ss_pred             CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHH
T ss_conf             799999999999999997799------------88998999867999999999999875210368996499994719999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999998
Q gi|254781187|r  121 KNTLWAEVSKWLS  133 (367)
Q Consensus       121 ~~~lw~ei~k~~~  133 (367)
T Consensus        89 ~Qi-~~~~~~l~~  100 (417)
T PRK11192         89 MQV-ADQARELAK  100 (417)
T ss_pred             HHH-HHHHHHHHC
T ss_conf             999-999998640