HHsearch alignment for GI: 254781187 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=93.72 E-value=0.48 Score=25.38 Aligned_cols=189 Identities=15% Similarity=0.138 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999988887512455555411247761488678899999999999970899779997153799999999999999986
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~ 134 (367)
T Consensus 14 QP~AI~~L~~~l~~G~~------~Qt-LLGvTGsGKTFT~AnVIa~-----~~rPTLV~aHNK-TLAAQLY~EfKef--- 77 (667)
T TIGR00631 14 QPKAIAKLVEGLEAGEK------EQT-LLGVTGSGKTFTMANVIAQ-----VQRPTLVLAHNK-TLAAQLYNEFKEF--- 77 (667)
T ss_pred HHHHHHHHHHHHHCCCC------CEE-EEEEECCCHHHHHHHHHHH-----HCCCEEEECCCH-HHHHHHHHHHHHH---
T ss_conf 18999999999856887------147-8532148627889899998-----479849985777-6799999999863---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHH---HHH
Q ss_conf 23121123333210001233322111134577612662101354455652101135862899975455998899---998
Q gi|254781187|r 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN---KSI 211 (367)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~---e~i 211 (367)
T Consensus 78 FPeN------A-----V----EYFvSY--------------YDYYQPEAYvP~~----DtyI-EKdaSINdeIerlR~SA 123 (667)
T TIGR00631 78 FPEN------A-----V----EYFVSY--------------YDYYQPEAYVPSK----DTYI-EKDASINDEIERLRLSA 123 (667)
T ss_pred CCCC------C-----E----EEEEEC--------------CCCCCCCCCCCCC----CCEE-ECCCCHHHHHHHHHHHH
T ss_conf 8677------2-----4----525520--------------3237873214798----8413-04553004676778898
Q ss_pred HHHHHCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHH---------CCCCCCEEEE
Q ss_conf 9874069882589998078999876887541122350467523332888898899999962---------1688000268
Q gi|254781187|r 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR---------YGLDSDVARI 282 (367)
Q Consensus 212 ~g~Lt~~~~~~~~i~igNP~r~~g~Fye~~~~~~~~w~~~~~~~~d~p~~~~~~i~~~~~~---------~gedS~~~r~ 282 (367)
T Consensus 124 T~SLl~RrDVIVVASVScIYGL---------G~P~~Y~~~~~~l~vG~~~~~~~ll~~LV~lqY~RNd~~f~RG~FRvrG 194 (667)
T TIGR00631 124 TKSLLERRDVIVVASVSCIYGL---------GSPEEYLKMVLHLEVGKEIDRRELLRRLVELQYERNDVDFQRGTFRVRG 194 (667)
T ss_pred HHHHCCCCCEEEEEEEEEECCC---------CCCHHHHCCEEEEEECCCCCHHHHHHHHHHHCEEECCEECCCCCEEEEE
T ss_conf 8864237878999875520688---------8825564227865407855889999886340305712340577125763
Q ss_pred EEEEEEC-CCCCCEEECHHHH
Q ss_conf 8864432-7789807829998
Q gi|254781187|r 283 EILGQFP-QQEVNNFIPHNYI 302 (367)
Q Consensus 283 ev~G~Fp-~~~~d~~ip~~~i 302 (367)
T Consensus 195 DVvEIfP~~~~~~~~~RiEfF 215 (667)
T TIGR00631 195 DVVEIFPAAYEDEFAVRIEFF 215 (667)
T ss_pred EEEEEECCCCCCCCEEEEEEE
T ss_conf 189863477677724899852