HHsearch alignment for GI: 254781187 and conserved domain: TIGR00631

>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=93.72  E-value=0.48  Score=25.38  Aligned_cols=189  Identities=15%  Similarity=0.138  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999988887512455555411247761488678899999999999970899779997153799999999999999986
Q gi|254781187|r   55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM  134 (367)
Q Consensus        55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~  134 (367)
T Consensus        14 QP~AI~~L~~~l~~G~~------~Qt-LLGvTGsGKTFT~AnVIa~-----~~rPTLV~aHNK-TLAAQLY~EfKef---   77 (667)
T TIGR00631        14 QPKAIAKLVEGLEAGEK------EQT-LLGVTGSGKTFTMANVIAQ-----VQRPTLVLAHNK-TLAAQLYNEFKEF---   77 (667)
T ss_pred             HHHHHHHHHHHHHCCCC------CEE-EEEEECCCHHHHHHHHHHH-----HCCCEEEECCCH-HHHHHHHHHHHHH---
T ss_conf             18999999999856887------147-8532148627889899998-----479849985777-6799999999863---


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHH---HHH
Q ss_conf             23121123333210001233322111134577612662101354455652101135862899975455998899---998
Q gi|254781187|r  135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN---KSI  211 (367)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~---e~i  211 (367)
T Consensus        78 FPeN------A-----V----EYFvSY--------------YDYYQPEAYvP~~----DtyI-EKdaSINdeIerlR~SA  123 (667)
T TIGR00631        78 FPEN------A-----V----EYFVSY--------------YDYYQPEAYVPSK----DTYI-EKDASINDEIERLRLSA  123 (667)
T ss_pred             CCCC------C-----E----EEEEEC--------------CCCCCCCCCCCCC----CCEE-ECCCCHHHHHHHHHHHH
T ss_conf             8677------2-----4----525520--------------3237873214798----8413-04553004676778898


Q ss_pred             HHHHHCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHH---------CCCCCCEEEE
Q ss_conf             9874069882589998078999876887541122350467523332888898899999962---------1688000268
Q gi|254781187|r  212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR---------YGLDSDVARI  282 (367)
Q Consensus       212 ~g~Lt~~~~~~~~i~igNP~r~~g~Fye~~~~~~~~w~~~~~~~~d~p~~~~~~i~~~~~~---------~gedS~~~r~  282 (367)
T Consensus       124 T~SLl~RrDVIVVASVScIYGL---------G~P~~Y~~~~~~l~vG~~~~~~~ll~~LV~lqY~RNd~~f~RG~FRvrG  194 (667)
T TIGR00631       124 TKSLLERRDVIVVASVSCIYGL---------GSPEEYLKMVLHLEVGKEIDRRELLRRLVELQYERNDVDFQRGTFRVRG  194 (667)
T ss_pred             HHHHCCCCCEEEEEEEEEECCC---------CCCHHHHCCEEEEEECCCCCHHHHHHHHHHHCEEECCEECCCCCEEEEE
T ss_conf             8864237878999875520688---------8825564227865407855889999886340305712340577125763


Q ss_pred             EEEEEEC-CCCCCEEECHHHH
Q ss_conf             8864432-7789807829998
Q gi|254781187|r  283 EILGQFP-QQEVNNFIPHNYI  302 (367)
Q Consensus       283 ev~G~Fp-~~~~d~~ip~~~i  302 (367)
T Consensus       195 DVvEIfP~~~~~~~~~RiEfF  215 (667)
T TIGR00631       195 DVVEIFPAAYEDEFAVRIEFF  215 (667)
T ss_pred             EEEEEECCCCCCCCEEEEEEE
T ss_conf             189863477677724899852