HHsearch alignment for GI: 254781187 and conserved domain: TIGR00643
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=94.67 E-value=0.3 Score=26.68 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=60.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 88443666842899999998888751245555541124776148867889999999999997089977999715379999
Q gi|254781187|r 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 (367)
Q Consensus 42 ~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~ 121 (367)
T Consensus 303 ~LPF----~LT~aQ~r~v~EI~~DL~~~~-----pMnRL-lQGDVGSGKT~VA~la~l~~i--~~GYQ~ALMAPTEiLA~ 370 (721)
T TIGR00643 303 SLPF----ELTRAQKRVVKEILQDLKSDV-----PMNRL-LQGDVGSGKTLVAALAMLAAI--ESGYQVALMAPTEILAE 370 (721)
T ss_pred CCCC----CCCHHHHHHHHHHHHHHCCCC-----CCCCC-CCCCCCCHHHHHHHHHHHHHH--HCCCEEEEECCHHHHHH
T ss_conf 2888----776778999999998614787-----53222-110106638999999999998--46980999177689999
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999862
Q gi|254781187|r 122 NTLWAEVSKWLSML 135 (367)
Q Consensus 122 ~~lw~ei~k~~~~~ 135 (367)
T Consensus 371 Q-Hy~~~~~~l~p~ 383 (721)
T TIGR00643 371 Q-HYDSLRNLLAPL 383 (721)
T ss_pred H-HHHHHHHHHCCC
T ss_conf 9-999999962354