HHsearch alignment for GI: 254781187 and conserved domain: TIGR01074

>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=92.70  E-value=0.26  Score=27.01  Aligned_cols=89  Identities=21%  Similarity=0.120  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH--HHCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf             999999888875124555554112477614886788999999999999--708997799971537999999999999999
Q gi|254781187|r   55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI--STRPGMSIICIANSETQLKNTLWAEVSKWL  132 (367)
Q Consensus        55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~--~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~  132 (367)
T Consensus         8 Q~~AV~Y~~G----------P----lLVLAGAGSGKT~VI~~KIayLi~~cgY~a~~IaAvTFTNKAA~EMk-ERVA~~L   72 (677)
T TIGR01074         8 QQEAVEYVGG----------P----LLVLAGAGSGKTRVITNKIAYLIQNCGYKAKNIAAVTFTNKAAREMK-ERVAKTL   72 (677)
T ss_pred             HHHHHHHHCC----------C----CEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHH-HHHHHHC
T ss_conf             7999986158----------7----14651777786357888999987515878761689735237779999-9998522


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86231211233332100012333221
Q gi|254781187|r  133 SMLPHRHWFEMQSLSLHPSGWYAELL  158 (367)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (367)
T Consensus        73 ~~~~~~GL~isTFH~LGL~Ii~~E~~   98 (677)
T TIGR01074        73 GKGQAKGLTISTFHTLGLKIIRREHN   98 (677)
T ss_pred             CCCCCCCCEEECCHHHHHHHHHHHHH
T ss_conf             65455854475205733899999998