HHsearch alignment for GI: 254781187 and conserved domain: TIGR01074
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=92.70 E-value=0.26 Score=27.01 Aligned_cols=89 Identities=21% Similarity=0.120 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH--HHCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 999999888875124555554112477614886788999999999999--708997799971537999999999999999
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI--STRPGMSIICIANSETQLKNTLWAEVSKWL 132 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~--~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~ 132 (367)
T Consensus 8 Q~~AV~Y~~G----------P----lLVLAGAGSGKT~VI~~KIayLi~~cgY~a~~IaAvTFTNKAA~EMk-ERVA~~L 72 (677)
T TIGR01074 8 QQEAVEYVGG----------P----LLVLAGAGSGKTRVITNKIAYLIQNCGYKAKNIAAVTFTNKAAREMK-ERVAKTL 72 (677)
T ss_pred HHHHHHHHCC----------C----CEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHH-HHHHHHC
T ss_conf 7999986158----------7----14651777786357888999987515878761689735237779999-9998522
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86231211233332100012333221
Q gi|254781187|r 133 SMLPHRHWFEMQSLSLHPSGWYAELL 158 (367)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (367)
T Consensus 73 ~~~~~~GL~isTFH~LGL~Ii~~E~~ 98 (677)
T TIGR01074 73 GKGQAKGLTISTFHTLGLKIIRREHN 98 (677)
T ss_pred CCCCCCCCEEECCHHHHHHHHHHHHH
T ss_conf 65455854475205733899999998