HHsearch alignment for GI: 254781187 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=98.21 E-value=3.8e-05 Score=50.55 Aligned_cols=156 Identities=19% Similarity=0.161 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CEEEEECCCHHHHHHHHHH
Q ss_conf 28999999988887512455555411247761488678899999999999970899-----7799971537999999999
Q gi|254781187|r 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-----MSIICIANSETQLKNTLWA 126 (367)
Q Consensus 52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~-----~~v~~~A~t~~Q~~~~lw~ 126 (367)
T Consensus 229 ~D~Q~~a~~~aL~---~~--------f-~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~-RL~e 295 (753)
T TIGR01447 229 TDWQKVAVALALK---SN--------F-SLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAA-RLAE 295 (753)
T ss_pred HHHHHHHHHHHHH---CC--------E-EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH-HHHH
T ss_conf 3799999999860---87--------6-89987988977899999999999989864997404788668447999-9999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99999986231211233332100012333221111345776126621013544556521011358628999754559988
Q gi|254781187|r 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 (367)
Q Consensus 127 ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~ 206 (367)
T Consensus 296 sl~~~~~~L~~~~~-aid--~~~~~~~~~~~~T--iHrLLG~~~I~~~~fr~h~~N~------L~~DVLvvDEaSMVdl~ 364 (753)
T TIGR01447 296 SLRKAVKKLAAENM-AID--EDLIAALPSEATT--IHRLLGIKPIDTKRFRHHERNP------LPLDVLVVDEASMVDLP 364 (753)
T ss_pred HHHHHHHHHHHHCC-CCC--HHHHCCCCHHHHH--HHHHHCCCCCCCCCCCCCCCCC------CCCCEEEECCCHHCCHH
T ss_conf 99988632234236-658--7985487204568--8886166147876776777788------98552787060022679
Q ss_pred HHHHHHHHHHCCCCC------EEEEEEECCCC
Q ss_conf 999989874069882------58999807899
Q gi|254781187|r 207 INKSILGFFTELNPN------RFWIMTSNTRR 232 (367)
Q Consensus 207 i~e~i~g~Lt~~~~~------~~~i~igNP~r 232 (367)
T Consensus 365 lm~kL~~A~~~~~-k~~KLy~~~LIllGD~nQ 395 (753)
T TIGR01447 365 LMAKLLKALPPNT-KDKKLYADRLILLGDKNQ 395 (753)
T ss_pred HHHHHHHHCCCCC-CCCCHHHCCCCEECCCCC
T ss_conf 9999997226300-132010102001226788