HHsearch alignment for GI: 254781187 and conserved domain: TIGR01447

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=98.21  E-value=3.8e-05  Score=50.55  Aligned_cols=156  Identities=19%  Similarity=0.161  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CEEEEECCCHHHHHHHHHH
Q ss_conf             28999999988887512455555411247761488678899999999999970899-----7799971537999999999
Q gi|254781187|r   52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-----MSIICIANSETQLKNTLWA  126 (367)
Q Consensus        52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~-----~~v~~~A~t~~Q~~~~lw~  126 (367)
T Consensus       229 ~D~Q~~a~~~aL~---~~--------f-~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~-RL~e  295 (753)
T TIGR01447       229 TDWQKVAVALALK---SN--------F-SLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAA-RLAE  295 (753)
T ss_pred             HHHHHHHHHHHHH---CC--------E-EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH-HHHH
T ss_conf             3799999999860---87--------6-89987988977899999999999989864997404788668447999-9999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf             99999986231211233332100012333221111345776126621013544556521011358628999754559988
Q gi|254781187|r  127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI  206 (367)
Q Consensus       127 ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~  206 (367)
T Consensus       296 sl~~~~~~L~~~~~-aid--~~~~~~~~~~~~T--iHrLLG~~~I~~~~fr~h~~N~------L~~DVLvvDEaSMVdl~  364 (753)
T TIGR01447       296 SLRKAVKKLAAENM-AID--EDLIAALPSEATT--IHRLLGIKPIDTKRFRHHERNP------LPLDVLVVDEASMVDLP  364 (753)
T ss_pred             HHHHHHHHHHHHCC-CCC--HHHHCCCCHHHHH--HHHHHCCCCCCCCCCCCCCCCC------CCCCEEEECCCHHCCHH
T ss_conf             99988632234236-658--7985487204568--8886166147876776777788------98552787060022679


Q ss_pred             HHHHHHHHHHCCCCC------EEEEEEECCCC
Q ss_conf             999989874069882------58999807899
Q gi|254781187|r  207 INKSILGFFTELNPN------RFWIMTSNTRR  232 (367)
Q Consensus       207 i~e~i~g~Lt~~~~~------~~~i~igNP~r  232 (367)
T Consensus       365 lm~kL~~A~~~~~-k~~KLy~~~LIllGD~nQ  395 (753)
T TIGR01447       365 LMAKLLKALPPNT-KDKKLYADRLILLGDKNQ  395 (753)
T ss_pred             HHHHHHHHCCCCC-CCCCHHHCCCCEECCCCC
T ss_conf             9999997226300-132010102001226788