HHsearch alignment for GI: 254781187 and conserved domain: TIGR01547
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family; InterPro: IPR006437 This group of sequences represent a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from the phage terminase family represented by IPR005021 from INTERPRO.; GO: 0006323 DNA packaging.
Probab=99.14 E-value=7e-09 Score=73.43 Aligned_cols=248 Identities=16% Similarity=0.155 Sum_probs=170.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC
Q ss_conf 77614886788999999999999708-----997799971537999999999999999862312-112333321000123
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTR-----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR-HWFEMQSLSLHPSGW 153 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~-----~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~-~~~~~~~~~~~~~~~ 153 (367)
T Consensus 4 ~~~~G~~~sgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~----- 78 (462)
T TIGR01547 4 IIAKGGRGSGKTFAIALKLVLKLLANKDLYGKPRNILAARKVQNSIRDSVFKDIEDLLSDLGLNLYEFKKSKSPM----- 78 (462)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC-----
T ss_conf 663266653157899999999998764531488406887402335665668889999987064022132036662-----
Q ss_pred CCCCCCCCCCCCC---CCEEEEECCCCCCCCCCCCCCCCC--------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-
Q ss_conf 3322111134577---612662101354455652101135--------8628999754559988999989874069882-
Q gi|254781187|r 154 YAELLEQSMGIDS---KHYTITCRTYSEERPDTFVGPHNT--------HGMAVFNDEASGTPDIINKSILGFFTELNPN- 221 (367)
Q Consensus 154 ~~~~~~~~~~~~~---~~~~~~a~~~~~~~~ea~~g~h~~--------~~~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~- 221 (367)
T Consensus 79 -------~~~~~~~~~~~~~~f~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~r~~~~~~ 150 (462)
T TIGR01547 79 -------EIKILNTGGGAYFIFK-GLNSDKPEKLKSGAGLGFTLWEVGLLADLWFEEASELTKEDIKELIPRLREPGGKN 150 (462)
T ss_pred -------EEEECCCCCCEEEEEE-CCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCE
T ss_conf -------5776157886179960-65756246643104664100014455656555444301446888887640577750
Q ss_pred EEEEEEECCCCCCCHHHHHHHCC--C--CCEE---------------EEEECCCCCCCCC----HHHHHHHHHHCCCCCC
Q ss_conf 58999807899987688754112--2--3504---------------6752333288889----8899999962168800
Q gi|254781187|r 222 RFWIMTSNTRRLNGWFYDIFNIP--L--EDWK---------------RYQIDTRTVEGID----SGFHEGIISRYGLDSD 278 (367)
Q Consensus 222 ~~~i~igNP~r~~g~Fye~~~~~--~--~~w~---------------~~~~~~~d~p~~~----~~~i~~~~~~~gedS~ 278 (367)
T Consensus 151 ~~~~~~~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dn~~~~~~~~~~~~~~~~~~~~~~~~ 230 (462)
T TIGR01547 151 KFIIFSSNPESPLHWVYKDFIENLGEDEFRICDKPPYEYGVVDKKLYILHSTYRDNPFLSGGDVEEYIQELEKLKDRDPA 230 (462)
T ss_pred EEEEEEECCCCCCCHHHHHHHHCCCCCCHHHHCCCCHHHHHEEECEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHH
T ss_conf 69998408898553056665430477601221011013220000002567420346567611589999999986315613
Q ss_pred EEEEEEEEEECCCCCCEEECHHHH------HHHHC---CCCCCCCCCCE--EEEEECCCC-CCCEEEEEEECCC
Q ss_conf 026888644327789807829998------64431---57777889848--999963877-8810899997088
Q gi|254781187|r 279 VARIEILGQFPQQEVNNFIPHNYI------EEAMS---REAIDDLYAPL--IMGCDIAGE-GGDKTVVVFRRGN 340 (367)
Q Consensus 279 ~~r~ev~G~Fp~~~~d~~ip~~~i------e~a~~---~~~~~~~~~p~--viGvDvAr~-G~D~Tvi~~r~G~ 340 (367)
T Consensus 231 ~~~~~~~G~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 304 (462)
T TIGR01547 231 LYRRILLGEWVSAADVWSLGLPVLTSEGILFKKLDVKAAYIKELPNDPSDFVGGIDAGGVDGNSPSAYVLLGIE 304 (462)
T ss_pred HHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCCEEEEEEEEE
T ss_conf 43344423510122332204444344411121110022123431232100013201476666530367887200