HHsearch alignment for GI: 254781187 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=96.44 E-value=0.067 Score=30.65 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC----C--EEEEECCCHHHHHHHH---
Q ss_conf 999999988887512455555411247761488678899999999999970899----7--7999715379999999---
Q gi|254781187|r 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG----M--SIICIANSETQLKNTL--- 124 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~----~--~v~~~A~t~~Q~~~~l--- 124 (367)
T Consensus 18 GQ~~iv~tL~NAi~~~ri-~HAY----LF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g~~~DviEiD 91 (363)
T TIGR02397 18 GQEHIVKTLKNAIKNGRI-AHAY----LFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSGSSLDVIEID 91 (363)
T ss_pred CCHHHHHHHHHHHHHCCC-CCEE----EECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCCCCCCEEEEC
T ss_conf 517999999999971896-6234----502859976355899999986588-7877877775022776528986668864
Q ss_pred ------H---HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf ------9---9999999862312112333321000123332211113457761266210135445565210113586289
Q gi|254781187|r 125 ------W---AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 (367)
Q Consensus 125 ------w---~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ 195 (367)
T Consensus 92 AASN~gVD~IR~l~e~v~--------------------------------------------------y~P~~~kYKv-Y 120 (363)
T TIGR02397 92 AASNNGVDDIRELRENVK--------------------------------------------------YAPSKGKYKV-Y 120 (363)
T ss_pred CCCCCCHHHHHHHHHHHC--------------------------------------------------CCCCCCCCCE-E
T ss_conf 865687889999987303--------------------------------------------------6875544335-8
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 99754559988999989874069882589998078
Q gi|254781187|r 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 (367)
Q Consensus 196 ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP 230 (367)
T Consensus 121 IIDEVHMLS~~AFNALLKTLEEPP~hV~FI-lATT 154 (363)
T TIGR02397 121 IIDEVHMLSKSAFNALLKTLEEPPEHVVFI-LATT 154 (363)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCEEEE-EECC
T ss_conf 873230286568999876522798762888-7348