HHsearch alignment for GI: 254781187 and conserved domain: TIGR02621

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=95.80  E-value=0.03  Score=32.78  Aligned_cols=158  Identities=17%  Similarity=0.138  Sum_probs=81.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHH-HHHHHHHHHHHHHC-----------CCCEEEE
Q ss_conf             43666842899999998888751245555541124776148867889-99999999999708-----------9977999
Q gi|254781187|r   45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT-TLNAWMMLWLISTR-----------PGMSIIC  112 (367)
Q Consensus        45 ~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS-~~~a~~~lw~~~~~-----------~~~~v~~  112 (367)
T Consensus        11 ~~G~~GPfpwQ~~L~~r~~~G-------~~P~----~~s~PTg~GKTlavi~~WlyAl~~~a~~~Grrr~~~~vP~RL~y   79 (975)
T TIGR02621        11 LTGYSGPFPWQLRLAERFVAG-------EPPE----SCSVPTGLGKTLAVIAVWLYALAIDAEQVGRRRRRRKVPRRLVY   79 (975)
T ss_pred             HCCCCCCCHHHHHHHHHHHCC-------CCCC----CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEE
T ss_conf             358988865899999998548-------9887----66787532368999999999987400036732421336831378


Q ss_pred             ECCCHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCCCC-------------CCCCCCCCCC--CCCCCCCCC-CEE
Q ss_conf             715379999999999999998623121123------333210-------------0012333221--111345776-126
Q gi|254781187|r  113 IANSETQLKNTLWAEVSKWLSMLPHRHWFE------MQSLSL-------------HPSGWYAELL--EQSMGIDSK-HYT  170 (367)
Q Consensus       113 ~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~------~~~~~~-------------~~~~~~~~~~--~~~~~~~~~-~~~  170 (367)
T Consensus        80 vVdR-R~vVD~~te~a~~i~~aL~~~pe~~Av~~vl~slr~~~~~Pa~a~pl~v~~LRGg~ad~~rDltew~~~P~rPav  158 (975)
T TIGR02621        80 VVDR-RTVVDQSTEEAEKIREALGEAPELPAVRYVLESLRSAFAIPAEAEPLAVSTLRGGFADNDRDLTEWTRDPSRPAV  158 (975)
T ss_pred             EEEC-CEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf             8714-245343278999999854688877899999997323678776566523311167553022323345317899669


Q ss_pred             EEE-------------CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             621-------------0135445565210113586289997545599889999898740
Q gi|254781187|r  171 ITC-------------RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT  216 (367)
Q Consensus       171 ~~a-------------~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g~Lt  216 (367)
T Consensus       159 ivgTvDm~gSRLLFrGYg~spk~rpihAal~G~D-Al~VlDEA-Hl~~~f~e~L~~i~~  215 (975)
T TIGR02621       159 IVGTVDMIGSRLLFRGYGCSPKSRPIHAALLGQD-ALIVLDEA-HLSPAFQETLKQIRS  215 (975)
T ss_pred             EEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHCH-HHHHHHHH-HCCHHHHHHHHHHHH
T ss_conf             9834420234354413456766551122213110-66543343-058789999999851