HHsearch alignment for GI: 254781187 and conserved domain: TIGR02621
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=95.80 E-value=0.03 Score=32.78 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=81.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHH-HHHHHHHHHHHHHC-----------CCCEEEE
Q ss_conf 43666842899999998888751245555541124776148867889-99999999999708-----------9977999
Q gi|254781187|r 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT-TLNAWMMLWLISTR-----------PGMSIIC 112 (367)
Q Consensus 45 ~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS-~~~a~~~lw~~~~~-----------~~~~v~~ 112 (367)
T Consensus 11 ~~G~~GPfpwQ~~L~~r~~~G-------~~P~----~~s~PTg~GKTlavi~~WlyAl~~~a~~~Grrr~~~~vP~RL~y 79 (975)
T TIGR02621 11 LTGYSGPFPWQLRLAERFVAG-------EPPE----SCSVPTGLGKTLAVIAVWLYALAIDAEQVGRRRRRRKVPRRLVY 79 (975)
T ss_pred HCCCCCCCHHHHHHHHHHHCC-------CCCC----CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEE
T ss_conf 358988865899999998548-------9887----66787532368999999999987400036732421336831378
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCCCC-------------CCCCCCCCCC--CCCCCCCCC-CEE
Q ss_conf 715379999999999999998623121123------333210-------------0012333221--111345776-126
Q gi|254781187|r 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFE------MQSLSL-------------HPSGWYAELL--EQSMGIDSK-HYT 170 (367)
Q Consensus 113 ~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~------~~~~~~-------------~~~~~~~~~~--~~~~~~~~~-~~~ 170 (367)
T Consensus 80 vVdR-R~vVD~~te~a~~i~~aL~~~pe~~Av~~vl~slr~~~~~Pa~a~pl~v~~LRGg~ad~~rDltew~~~P~rPav 158 (975)
T TIGR02621 80 VVDR-RTVVDQSTEEAEKIREALGEAPELPAVRYVLESLRSAFAIPAEAEPLAVSTLRGGFADNDRDLTEWTRDPSRPAV 158 (975)
T ss_pred EEEC-CEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 8714-245343278999999854688877899999997323678776566523311167553022323345317899669
Q ss_pred EEE-------------CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 621-------------0135445565210113586289997545599889999898740
Q gi|254781187|r 171 ITC-------------RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 (367)
Q Consensus 171 ~~a-------------~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g~Lt 216 (367)
T Consensus 159 ivgTvDm~gSRLLFrGYg~spk~rpihAal~G~D-Al~VlDEA-Hl~~~f~e~L~~i~~ 215 (975)
T TIGR02621 159 IVGTVDMIGSRLLFRGYGCSPKSRPIHAALLGQD-ALIVLDEA-HLSPAFQETLKQIRS 215 (975)
T ss_pred EEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHCH-HHHHHHHH-HCCHHHHHHHHHHHH
T ss_conf 9834420234354413456766551122213110-66543343-058789999999851