HHsearch alignment for GI: 254781187 and conserved domain: TIGR03305
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=90.83 E-value=0.78 Score=24.08 Aligned_cols=51 Identities=29% Similarity=0.526 Sum_probs=35.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHHHHHHHH
Q ss_conf 4776148867889999999999997089977999-715379999999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC-IANSETQLKNTLWAEVSK 130 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~-~A~t~~Q~~~~lw~ei~k 130 (367)
T Consensus 140 r~gIfggaGvGKT~Ll~e~i~n~~~~~~~v~V~~~IGER~rE~~e-~~~el~~ 191 (449)
T TIGR03305 140 KAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEE-LYREMKE 191 (449)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHH-HHHHHHH
T ss_conf 656652799984101899998656414886899997452167999-9999875