HHsearch alignment for GI: 254781187 and conserved domain: TIGR03499

>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.99  E-value=0.037  Score=32.18  Aligned_cols=70  Identities=13%  Similarity=0.013  Sum_probs=45.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC--CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE-EEEECCCHHH
Q ss_conf             8428999999988887512455555--41124776148867889999999999997089977-9997153799
Q gi|254781187|r   50 QPHRWQLEFMEAVDVHCHSNVNNSN--PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSETQ  119 (367)
Q Consensus        50 ~p~~wq~~~l~~~~~~~~~~~~~~~--~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~-v~~~A~t~~Q  119 (367)
T Consensus       165 ~~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRi  237 (282)
T TIGR03499       165 DAESAWRWLREALENMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRI  237 (282)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
T ss_conf             9789999999999964777887655445672799977888757889999999999973899679998077767