HHsearch alignment for GI: 254781187 and conserved domain: TIGR03499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.99 E-value=0.037 Score=32.18 Aligned_cols=70 Identities=13% Similarity=0.013 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC--CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE-EEEECCCHHH
Q ss_conf 8428999999988887512455555--41124776148867889999999999997089977-9997153799
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSN--PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSETQ 119 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~--~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~-v~~~A~t~~Q 119 (367)
T Consensus 165 ~~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRi 237 (282)
T TIGR03499 165 DAESAWRWLREALENMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRI 237 (282)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
T ss_conf 9789999999999964777887655445672799977888757889999999999973899679998077767