HHsearch alignment for GI: 254781187 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=98.03 E-value=9.5e-05 Score=48.11 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 2899999998888751245555541124776148867889999999999997089-977999715379999999999999
Q gi|254781187|r 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSK 130 (367)
Q Consensus 52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~lw~ei~k 130 (367)
T Consensus 1 ~~~Q~~~i~~~~~g~------------~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~-~~~~~ 67 (167)
T pfam00270 1 TPIQAEAIPAILEGK------------DVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIY-EELKK 67 (167)
T ss_pred CHHHHHHHHHHHCCC------------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH-HHHHH
T ss_conf 945999999997699------------78998899975899999999999874778987999906088888999-88643
Q ss_pred HHH
Q ss_conf 998
Q gi|254781187|r 131 WLS 133 (367)
Q Consensus 131 ~~~ 133 (367)
T Consensus 68 ~~~ 70 (167)
T pfam00270 68 LGK 70 (167)
T ss_pred HHH
T ss_conf 210