HHsearch alignment for GI: 254781187 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=93.92 E-value=0.1 Score=29.53 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=36.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHH
Q ss_conf 477614886788999999999999708--997799971537999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNT 123 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~--~~~~v~~~A~t~~Q~~~~ 123 (367)
T Consensus 15 ~llV~AgAGSGKT~~L~~Ri~~li~~~~~~p~~IL~lTFT~kAA~Em 61 (494)
T pfam00580 15 PLLVLAGAGTGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAAREM 61 (494)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECHHHHHHHH
T ss_conf 97999718706899999999999981899974787670289999999