HHsearch alignment for GI: 254781187 and conserved domain: pfam03354
>pfam03354 Terminase_1 Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.
Probab=99.82 E-value=3.1e-18 Score=130.78 Aligned_cols=261 Identities=15% Similarity=0.147 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEE-EEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 899999998888751245555541124-77614886788999999999999708--997799971537999999999999
Q gi|254781187|r 53 RWQLEFMEAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 53 ~wq~~~l~~~~~~~~~~~~~~~~~~~~-~~v~sgrg~GKS~~~a~~~lw~~~~~--~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
T Consensus 1 PwQ~f~i~~ifGw~~~----~g~Rrfr~~~i~v~RkNGKS~l~a~i~ly~~~~~ge~~~ei~~~A~~~~QA~-~~f~~~~ 75 (473)
T pfam03354 1 PWQKFILGLMFGWRKG----CGVRRFREAYVSVGRKNGKSYLMAIRVLYELLLGGKSNQEILVAATTFKQAE-KLFKYVK 75 (473)
T ss_pred CCHHHHHHHEEEEEEC----CCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHH-HHHHHHH
T ss_conf 9461562514418928----9988999999998268602699999999999709983874999979899999-9999999
Q ss_pred HHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCC-HHH
Q ss_conf 99986231211-2333321000123332211113457761266210135445565210113586289997545599-889
Q gi|254781187|r 130 KWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DII 207 (367)
Q Consensus 130 k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~-d~i 207 (367)
T Consensus 76 ~mi~~~p~l~~~~~~~-------~~~--~~~~~i~~~~t~s~~~~ls~---~~~~~dG---~~~~~~i~DE~h~~~~~~~ 140 (473)
T pfam03354 76 NQVKLSPFLSIANENK-------LLK--SQKDGIEMKINNNVFKALSN---NGDQYDG---GNPSLAIFDEMHEFKDREL 140 (473)
T ss_pred HHHHCCHHHHHHHHCC-------CCC--CCCEEEEECCCCCEEEEEEC---CCCCCCC---CCCCEEEEEECCCCCCHHH
T ss_conf 9997398777553011-------013--10015898078968999857---8987669---9872899872230488278
Q ss_pred HHHHHHHHHCCCCCEEEEEEECC-CCCCCHHHHHHHCCC---------CC--E--EEEEECCC-----------CCCCC-
Q ss_conf 99989874069882589998078-999876887541122---------35--0--46752333-----------28888-
Q gi|254781187|r 208 NKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPL---------ED--W--KRYQIDTR-----------TVEGI- 261 (367)
Q Consensus 208 ~e~i~g~Lt~~~~~~~~i~igNP-~r~~g~Fye~~~~~~---------~~--w--~~~~~~~~-----------d~p~~- 261 (367)
T Consensus 141 ~~~l~sg~~~r~~~l~-~~ITTag~~~~~~~~~~~~~~~~vl~g~~~~~d~~~f~~i~~~d~~dd~~D~~~W~kANP~lg 219 (473)
T pfam03354 141 VSTIVTGMRKQDNPQT-IQITTAGPNRGGPYDEEREYIKRILEGDVERDDDSYFGLIYELDNDDEVKDPAKWIKANPLLG 219 (473)
T ss_pred HHHHHHHHHCCCCCEE-EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCC
T ss_conf 9999876316888719-997677889887189999999999708777678766999971698877689899998596767
Q ss_pred ---CHHHHHHHHH-HCCCC--CCEEEEEEEEEECCCCCCEEECHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEEEEE
Q ss_conf ---9889999996-21688--00026888644327789807829998644315777788984899996387788108999
Q gi|254781187|r 262 ---DSGFHEGIIS-RYGLD--SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 (367)
Q Consensus 262 ---~~~~i~~~~~-~~ged--S~~~r~ev~G~Fp~~~~d~~ip~~~ie~a~~~~~~~~~~~p~viGvDvAr~G~D~Tvi~ 335 (367)
T Consensus 220 ~~~~~~~l~~~~~~a~~~p~~~~~f~~k~lN~w~~~~~~~wl~~~~w~~~~~-~~~~~~g~~~~~G~DlS~~-~Dlta~~ 297 (473)
T pfam03354 220 SSLTRDNLLKGLIDAIGSPLKMNKFLTKNFNLWMGQDTDSWLTLQDWEQAVF-PPFDINGRRVYIGVDLSMK-GDVTALV 297 (473)
T ss_pred CCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHCCC-CHHHHCCCEEEEEEEECCC-CCCCEEE
T ss_conf 8879999999999986493768999997238634454465789999974789-8578479969999840357-7641379
Q ss_pred E
Q ss_conf 9
Q gi|254781187|r 336 F 336 (367)
Q Consensus 336 ~ 336 (367)
T Consensus 298 ~ 298 (473)
T pfam03354 298 F 298 (473)
T ss_pred E
T ss_conf 9