HHsearch alignment for GI: 254781187 and conserved domain: pfam04851
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=98.34 E-value=6.8e-06 Score=55.12 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
T Consensus 3 ~LR~yQ~~a~~~~~~~~------------~~~i~~pTGsGKT~~~~~~i~~~~--~~~~~~lvlvp~~~L~~Q~------ 62 (103)
T pfam04851 3 ELRPYQIEAIRNLLEKK------------RGLIVMATGSGKTLTAAKLIARLL--KGKKKVLFLVPRKDLLEQA------ 62 (103)
T ss_pred CCCHHHHHHHHHHHHCC------------CEEEEECCCCCHHHHHHHHHHHHH--HCCCCEEEEECCHHHHHHH------
T ss_conf 87299999999999639------------869995899987999999999998--4699299990829999999------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHH-HH
Q ss_conf 99986231211233332100012333221111345776126621013544556521011358628999754559988-99
Q gi|254781187|r 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-IN 208 (367)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~-i~ 208 (367)
T Consensus 63 --~~~----------------------------------------------------------~lii~DE~H~~~a~~~~ 82 (103)
T pfam04851 63 --LEE----------------------------------------------------------FVIIIDEAHHSSAKTKY 82 (103)
T ss_pred --HHH----------------------------------------------------------HHHHHHHHHHCCCHHHH
T ss_conf --996----------------------------------------------------------56460163523537899
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCC
Q ss_conf 998987406988258999807899
Q gi|254781187|r 209 KSILGFFTELNPNRFWIMTSNTRR 232 (367)
Q Consensus 209 e~i~g~Lt~~~~~~~~i~igNP~r 232 (367)
T Consensus 83 ~~l~~~~~---~~~~lGlTATP~R 103 (103)
T pfam04851 83 RKILEYFK---PAFLLGLTATPER 103 (103)
T ss_pred HHHHHHCC---CCEEEEEEECCCC
T ss_conf 99999577---2608998008889