HHsearch alignment for GI: 254781187 and conserved domain: pfam07652
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=97.07 E-value=0.008 Score=36.29 Aligned_cols=131 Identities=18% Similarity=0.090 Sum_probs=74.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76148867889999999999997089977999715379999999999999998623121123333210001233322111
Q gi|254781187|r 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 (367)
Q Consensus 81 ~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
T Consensus 6 ~ld~HPGaGKTr~vLP~~v~~-~i~~~lRtlVLaPTR-----VV~~Em~eAL~g~~vr~~t~a~~~-------------- 65 (146)
T pfam07652 6 VLDLHPGAGKTRKVLPELVRE-CIDRRLRTLVLAPTR-----VVLAEMEEALRGLPIRYHTPAVSS-------------- 65 (146)
T ss_pred EEECCCCCCCCCHHHHHHHHH-HHHCCCEEEEECCHH-----HHHHHHHHHHCCCCCEEECHHHHC--------------
T ss_conf 985389999702248999999-997286189977279-----999999999758994675234313--------------
Q ss_pred CCCCCCCCEEEE-----ECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCCEEEEEEECCCC
Q ss_conf 134577612662-----1013544556521011358628999754559988999989874---06988258999807899
Q gi|254781187|r 161 SMGIDSKHYTIT-----CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF---TELNPNRFWIMTSNTRR 232 (367)
Q Consensus 161 ~~~~~~~~~~~~-----a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g~L---t~~~~~~~~i~igNP~r 232 (367)
T Consensus 66 ---~~~~~~ivdvmCHAT~t~r~-----l~~~~~~ny~viIMDE~H~~DP~SIAa-rG~~~~~~~~g~~a~i~mTATPPG 136 (146)
T pfam07652 66 ---EHTGREIVDVMCHATFTQRL-----LSPVRVPNYEVIIMDEAHFTDPASIAA-RGYISTLVELGEAAAIFMTATPPG 136 (146)
T ss_pred ---CCCCCCEEEEECHHHHHHHH-----HCCCCCCCEEEEEEECCCCCCHHHHHH-HHHHHHHHHCCCEEEEEEECCCCC
T ss_conf ---66888418897159888897-----368885644799985122389899998-899998854386579999568999
Q ss_pred CCCHHHHH
Q ss_conf 98768875
Q gi|254781187|r 233 LNGWFYDI 240 (367)
Q Consensus 233 ~~g~Fye~ 240 (367)
T Consensus 137 ~~~~fp~S 144 (146)
T pfam07652 137 TSDPFPES 144 (146)
T ss_pred CCCCCCCC
T ss_conf 89989888