HHsearch results for GI: 254781187 and protein with PDBid: 1hv8_A
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.01 E-value=2.8e-05 Score=49.98 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=52.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
Q ss_conf 36668428999999988887512455555411247761488678899999999999970899779997153799999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw 125 (367)
.+|..|+++|.+++..+-..-+ .+.|.++-|+|||.+...-++-.+....+.+++++.|+..-+.+..
T Consensus 24 ~g~~~~t~~Q~~ai~~~l~g~~-----------~vlv~apTGsGKT~~~~lp~l~~~~~~~~~~~li~~p~~~l~~q~~- 91 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFLNDEY-----------NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVA- 91 (367)
T ss_dssp HTCCSCCHHHHHHHHHHHHTCS-----------EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHCCCC-----------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHH-
T ss_conf 7999999999999999975999-----------9999889997699999999999865428966999951067667778-
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q gi|254781187|r 126 AEVSKWLS 133 (367)
Q Consensus 126 ~ei~k~~~ 133 (367)
..+.++..
T Consensus 92 ~~~~~~~~ 99 (367)
T 1hv8_A 92 DEIESLKG 99 (367)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHC
T ss_conf 89998731