HHsearch results for GI: 254781187 and protein with PDBid: 1rif_A
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.83 E-value=3.8e-07 Score=61.46 Aligned_cols=158 Identities=11% Similarity=0.037 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.||.+|.+++..+-.+- |..+.++.|+|||.+++.++.++. ...+.++++++|+..-+.+ +..++.
T Consensus 113 ~lrdyQ~eav~~~l~~~------------~~il~~pTGsGKT~i~~~i~~~~~-~~~~~k~Liivp~~~Lv~Q-~~~~~~ 178 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNR------------RRILNLPTSAGRSLIQALLARYYL-ENYEGKILIIVPTTALTTQ-MADDFV 178 (282)
T ss_dssp CCCHHHHHHHHHHHHHS------------EEEECCCTTSCHHHHHHHHHHHHH-HHCSSEEEEECSSHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHCC------------CEEEECCCCCCHHHHHHHHHHHHH-CCCCCCEEEEECCHHHHHH-HHHHHH
T ss_conf 87199999999999749------------829985788977899999999743-1367508999797899999-999888
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 99986231211233332100012333221111345776126621013544556521011358628999754559988999
Q gi|254781187|r 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 (367)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e 209 (367)
++....... ...+ +...........+....+.+.++......+- .+++.++|+|||..++...+.
T Consensus 179 ~~~~~~~~~------~~~i----~~g~~~~~~~~~~~~i~i~t~qsl~~~~~~~-----~~~f~~VIiDEaH~~~a~~~~ 243 (282)
T 1rif_A 179 DYRLFSHAM------IKKI----GGGASKDDKYKNDAPVVVGTWQTVVKQPKEW-----FSQFGMMMNDECHLATGKSIS 243 (282)
T ss_dssp HHTSCCGGG------EEEC----STTCSSTTCCCTTCSEEEECHHHHTTSCGGG-----GGGEEEEEEETGGGCCHHHHH
T ss_pred HHCCCCCCC------CEEE----ECCCCCCCCCCCCCEEEEEEEHHHHHCCHHH-----CCCCCEEEEECCCCCCCHHHH
T ss_conf 753675335------3033----0454465533434369998505533212211-----478899999289677833099
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 98987406988258999807899987688
Q gi|254781187|r 210 SILGFFTELNPNRFWIMTSNTRRLNGWFY 238 (367)
Q Consensus 210 ~i~g~Lt~~~~~~~~i~igNP~r~~g~Fy 238 (367)
.+...+. +.+..+-+++||++......
T Consensus 244 ~i~~~~~--~~~~rlGlTaT~~~~~~~~~ 270 (282)
T 1rif_A 244 SIISGLN--NCMFKFGLSGSLRDGKANIM 270 (282)
T ss_dssp HHTTTCT--TCCEEEEECSSCCTTSTTHH
T ss_pred HHHHHCC--CCCEEEEEEEECCCCCCCEE
T ss_conf 9998540--87968999852699874327