HHsearch results for GI: 254781187 and protein with PDBid: 1t6n_A
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.52 E-value=0.00029 Score=43.80 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=56.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997089-977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|++-|.+.+-.+-+.. .+.+.|..|+|||.....-++..+.... ..++++++||..-+.++
T Consensus 32 ~g~~~pt~iQ~~aip~il~g~------------dvii~a~TGSGKTlay~lp~~~~~~~~~~~~~~lil~PtreLa~qi- 98 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAILGM------------DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI- 98 (220)
T ss_dssp TTCCCCCHHHHHHHHHHHTTC------------CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCHHHHCCCHHHCCCCCCCCCEEEEECCCHHHHHHH-
T ss_conf 799999999999999997799------------8899777998720131141121135677883189937989999999-
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999862
Q gi|254781187|r 125 WAEVSKWLSML 135 (367)
Q Consensus 125 w~ei~k~~~~~ 135 (367)
...+++.....
T Consensus 99 ~~~~~~~~~~~ 109 (220)
T 1t6n_A 99 SKEYERFSKYM 109 (220)
T ss_dssp HHHHHHHTTTS
T ss_pred HHHHHHHHHHC
T ss_conf 99999998308