HHsearch results for GI: 254781187 and protein with PDBid: 1t6n_A

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.52  E-value=0.00029  Score=43.80  Aligned_cols=77  Identities=16%  Similarity=0.193  Sum_probs=56.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHH
Q ss_conf             3666842899999998888751245555541124776148867889999999999997089-977999715379999999
Q gi|254781187|r   46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTL  124 (367)
Q Consensus        46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~l  124 (367)
                      .+|..|++-|.+.+-.+-+..            .+.+.|..|+|||.....-++..+.... ..++++++||..-+.++ 
T Consensus        32 ~g~~~pt~iQ~~aip~il~g~------------dvii~a~TGSGKTlay~lp~~~~~~~~~~~~~~lil~PtreLa~qi-   98 (220)
T 1t6n_A           32 CGFEHPSEVQHECIPQAILGM------------DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI-   98 (220)
T ss_dssp             TTCCCCCHHHHHHHHHHHTTC------------CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH-
T ss_pred             CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCHHHHCCCHHHCCCCCCCCCEEEEECCCHHHHHHH-
T ss_conf             799999999999999997799------------8899777998720131141121135677883189937989999999-


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999862
Q gi|254781187|r  125 WAEVSKWLSML  135 (367)
Q Consensus       125 w~ei~k~~~~~  135 (367)
                      ...+++.....
T Consensus        99 ~~~~~~~~~~~  109 (220)
T 1t6n_A           99 SKEYERFSKYM  109 (220)
T ss_dssp             HHHHHHHTTTS
T ss_pred             HHHHHHHHHHC
T ss_conf             99999998308