HHsearch results for GI: 254781187 and protein with PDBid: 2chg_A
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.54 E-value=0.11 Score=28.09 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999888875124555554112477614886788999999999999708997799971537999999999999999862
Q gi|254781187|r 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
.++++.+...+.++.. | .+.+.+..|+|||+++-.++-...+......++..-.+...-.+.+...+......
T Consensus 23 ~~~~~~l~~~i~~~~~---~---~~Ll~Gp~G~GKTtla~~iak~l~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~- 95 (226)
T 2chg_A 23 DEVIQRLKGYVERKNI---P---HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART- 95 (226)
T ss_dssp HHHHHHHHHHHHTTCC---C---CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHCCCC---C---EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHC-
T ss_conf 9999999999976999---8---59888999998899999999998435556771323467767699999999999860-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 31211233332100012333221111345776126621013544556521011358628999754559988999989874
Q gi|254781187|r 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 (367)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g~L 215 (367)
.... +....++++||+...+.....++...+
T Consensus 96 ----------------------------------------------~~~~---~~~~~~iiide~~~l~~~~q~~ll~~l 126 (226)
T 2chg_A 96 ----------------------------------------------APIG---GAPFKIIFLDEADALTADAQAALRRTM 126 (226)
T ss_dssp ----------------------------------------------CCST---TCSCEEEEEETGGGSCHHHHHHHHHHH
T ss_pred ----------------------------------------------CCCC---CCCEEEEEECCHHHCCHHHHHHHHHHH
T ss_conf ----------------------------------------------1126---986699995112016899999988876
Q ss_pred HCCCCCEEEEEEEC
Q ss_conf 06988258999807
Q gi|254781187|r 216 TELNPNRFWIMTSN 229 (367)
Q Consensus 216 t~~~~~~~~i~igN 229 (367)
.........+++.|
T Consensus 127 e~~~~~~~~i~~~~ 140 (226)
T 2chg_A 127 EMYSKSCRFILSCN 140 (226)
T ss_dssp HHTTTTEEEEEEES
T ss_pred HHCCCCCEEEECCC
T ss_conf 42776544773679