HHsearch results for GI: 254781187 and protein with PDBid: 2fz4_A
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding protein; HET: DNA; 2.40A {Archaeoglobus fulgidus dsm 4304} SCOP: c.37.1.19
Probab=98.58 E-value=1e-06 Score=58.83 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.|++||.+++..+..+ .+..|.++-|+|||.++..++. .-+.++++++|+..-+.+ +..+++
T Consensus 93 ~Lr~yQ~eai~~~~~~------------~~gll~~pTGsGKT~ial~~i~-----~~~~~~LvvvP~~~L~~Q-w~~~~~ 154 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD------------KRGCIVLPTGSGKTHVAMAAIN-----ELSTPTLIVVPTLALAEQ-WKERLG 154 (237)
T ss_dssp CCCHHHHHHHHHHTTT------------SEEEEEESSSTTHHHHHHHHHH-----HSCSCEEEEESSHHHHHH-HHHHHG
T ss_pred CCCHHHHHHHHHHHHC------------CCCEEEECCCCCHHHHHHHHHH-----HHCCCEEEEECCHHHHHH-HHHHHH
T ss_conf 8599999999999968------------9969993899988899999999-----848988999774788778-999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 99986231211233332100012333221111345776126621013544556521011358628999754559988999
Q gi|254781187|r 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 (367)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e 209 (367)
++..... .. +.. ..+ +.....+.....-..+++.+ ...+.++|+|||..++...+.
T Consensus 155 ~~~~~~~----------~~----~~g-----~~~-~~~~i~i~t~~s~~~~~~~~----~~~f~lvIiDEaH~l~~~~~~ 210 (237)
T 2fz4_A 155 IFGEEYV----------GE----FSG-----RIK-ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYV 210 (237)
T ss_dssp GGCGGGE----------EE----ESS-----SCB-CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHH
T ss_pred HHCCCCC----------EE----ECC-----CCC-CCCCCCCCHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHH
T ss_conf 7360123----------13----425-----534-45421011489998618862----786658999797306877999
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCH
Q ss_conf 989874069882589998078999876
Q gi|254781187|r 210 SILGFFTELNPNRFWIMTSNTRRLNGW 236 (367)
Q Consensus 210 ~i~g~Lt~~~~~~~~i~igNP~r~~g~ 236 (367)
.+.-.+ ..+..+.+++||.|..|.
T Consensus 211 ~i~~~~---~~~~rLgLTATP~R~Dg~ 234 (237)
T 2fz4_A 211 QIAQMS---IAPFRLGLTATFEREDGR 234 (237)
T ss_dssp HHHHTC---CCSEEEEEEESCC-----
T ss_pred HHHHCC---CCCEEEEEECCCCCCCCC
T ss_conf 998617---888299992288678988