HHsearch results for GI: 254781187 and protein with PDBid: 2gk6_A

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A

Probab=96.17  E-value=0.021  Score=32.39  Aligned_cols=60  Identities=18%  Similarity=0.217  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf             2899999998888751245555541124776148867889999999999997089977999715379999999
Q gi|254781187|r   52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL  124 (367)
Q Consensus        52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~l  124 (367)
                      ..=|.++++..-.   +      |  + ..|.+|=|+|||+.++.++. .+..+++.+|+++|||-.-+.+++
T Consensus       182 N~~Q~~AV~~al~---~------~--l-~lI~GPPGTGKT~ti~~ii~-~l~~~~~~kILv~apTN~Avd~i~  241 (624)
T 2gk6_A          182 NHSQVYAVKTVLQ---R------P--L-SLIQGPPGTGKTVTSATIVY-HLARQGNGPVLVCAPSNIAVDQLT  241 (624)
T ss_dssp             CHHHHHHHHHHHT---C------S--E-EEEECCTTSCHHHHHHHHHH-HHHTSSSCCEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHHC---C------C--C-EEEECCCCCCHHHHHHHHHH-HHHHCCCCCEEEEECCHHHHHHHH
T ss_conf             9999999999963---9------9--7-59988999983089999999-999706897999938779999999