HHsearch results for GI: 254781187 and protein with PDBid: 2gno_A

>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: a.80.1.1 c.37.1.20
Probab=94.16  E-value=0.25  Score=25.84  Aligned_cols=111  Identities=8%  Similarity=0.063  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH---HCCCCEEEEECCC-----HHHHHHHHHH
Q ss_conf             9999998888751245555541124776148867889999999999997---0899779997153-----7999999999
Q gi|254781187|r   55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS---TRPGMSIICIANS-----ETQLKNTLWA  126 (367)
Q Consensus        55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~---~~~~~~v~~~A~t-----~~Q~~~~lw~  126 (367)
                      |.+.++.+...+.++.      ...+...+.-|+|||.++-.++--...   .|||  ++++.|-     -+|+|+    
T Consensus         2 ~~~~~~~~~~~~~~~~------~~~~~~~g~~g~gk~~~~~~~~~~i~~~~~~HpD--~~~i~~e~~~I~Id~IR~----   69 (305)
T 2gno_A            2 AKDQLETLKRIIEKSE------GISILINGEDLSYPREVSLELPEYVEKFPPKASD--VLEIDPEGENIGIDDIRT----   69 (305)
T ss_dssp             --CHHHHHHHHHHTCS------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT--EEEECCSSSCBCHHHHHH----
T ss_pred             CHHHHHHHHHHHHCCC------CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC--EEEEECCCCCCCHHHHHH----
T ss_conf             6789999999997699------9749888999988799999999997365677998--898707767899899999----


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf             99999986231211233332100012333221111345776126621013544556521011358628999754559988
Q gi|254781187|r  127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI  206 (367)
Q Consensus       127 ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~  206 (367)
                       +.+.+...|                                               ..|   .+ -.+|+|||......
T Consensus        70 -l~~~~~~~p-----------------------------------------------~~~---~~-KVvIId~ad~lt~~   97 (305)
T 2gno_A           70 -IKDFLNYSP-----------------------------------------------ELY---TR-KYVIVHDCERMTQQ   97 (305)
T ss_dssp             -HHHHHTSCC-----------------------------------------------SSS---SS-EEEEETTGGGBCHH
T ss_pred             -HHHHHHHCC-----------------------------------------------CCC---CC-EEEEEECHHHCCHH
T ss_conf             -999995355-----------------------------------------------358---96-69998575542999


Q ss_pred             HHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf             99998987406988258999807
Q gi|254781187|r  207 INKSILGFFTELNPNRFWIMTSN  229 (367)
Q Consensus       207 i~e~i~g~Lt~~~~~~~~i~igN  229 (367)
                      ...+++.+|-.+-..+..++++|
T Consensus        98 AaNaLLK~LEEPp~~t~fIL~t~  120 (305)
T 2gno_A           98 AANAFLKALEEPPEYAVIVLNTR  120 (305)
T ss_dssp             HHHHTHHHHHSCCTTEEEEEEES
T ss_pred             HHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             99999999747997705875205