HHsearch results for GI: 254781187 and protein with PDBid: 2gno_A
>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: a.80.1.1 c.37.1.20
Probab=94.16 E-value=0.25 Score=25.84 Aligned_cols=111 Identities=8% Similarity=0.063 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH---HCCCCEEEEECCC-----HHHHHHHHHH
Q ss_conf 9999998888751245555541124776148867889999999999997---0899779997153-----7999999999
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS---TRPGMSIICIANS-----ETQLKNTLWA 126 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~---~~~~~~v~~~A~t-----~~Q~~~~lw~ 126 (367)
|.+.++.+...+.++. ...+...+.-|+|||.++-.++--... .||| ++++.|- -+|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~------~~~~~~~g~~g~gk~~~~~~~~~~i~~~~~~HpD--~~~i~~e~~~I~Id~IR~---- 69 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE------GISILINGEDLSYPREVSLELPEYVEKFPPKASD--VLEIDPEGENIGIDDIRT---- 69 (305)
T ss_dssp --CHHHHHHHHHHTCS------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT--EEEECCSSSCBCHHHHHH----
T ss_pred CHHHHHHHHHHHHCCC------CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC--EEEEECCCCCCCHHHHHH----
T ss_conf 6789999999997699------9749888999988799999999997365677998--898707767899899999----
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99999986231211233332100012333221111345776126621013544556521011358628999754559988
Q gi|254781187|r 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 (367)
Q Consensus 127 ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~ 206 (367)
+.+.+...| ..| .+ -.+|+|||......
T Consensus 70 -l~~~~~~~p-----------------------------------------------~~~---~~-KVvIId~ad~lt~~ 97 (305)
T 2gno_A 70 -IKDFLNYSP-----------------------------------------------ELY---TR-KYVIVHDCERMTQQ 97 (305)
T ss_dssp -HHHHHTSCC-----------------------------------------------SSS---SS-EEEEETTGGGBCHH
T ss_pred -HHHHHHHCC-----------------------------------------------CCC---CC-EEEEEECHHHCCHH
T ss_conf -999995355-----------------------------------------------358---96-69998575542999
Q ss_pred HHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf 99998987406988258999807
Q gi|254781187|r 207 INKSILGFFTELNPNRFWIMTSN 229 (367)
Q Consensus 207 i~e~i~g~Lt~~~~~~~~i~igN 229 (367)
...+++.+|-.+-..+..++++|
T Consensus 98 AaNaLLK~LEEPp~~t~fIL~t~ 120 (305)
T 2gno_A 98 AANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp HHHHTHHHHHSCCTTEEEEEEES
T ss_pred HHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 99999999747997705875205