HHsearch results for GI: 254781187 and protein with PDBid: 2wjy_A
>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.28 E-value=0.0083 Score=34.86 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf 2899999998888751245555541124776148867889999999999997089977999715379999999
Q gi|254781187|r 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~l 124 (367)
..=|.++++..- +++ =..|.++=|+|||+.++.++.. +...+..+|+++|||-..+.+++
T Consensus 358 N~sQ~~AV~~al---~~~---------lsLIqGPPGTGKT~Ti~~iI~~-L~~~~~~kILVcApSN~AVD~l~ 417 (800)
T 2wjy_A 358 NHSQVYAVKTVL---QRP---------LSLIQGPPGTGKTVTSATIVYH-LARQGNGPVLVCAPSNIAVDQLT 417 (800)
T ss_dssp CHHHHHHHHHHH---TSS---------EEEEECCTTSCHHHHHHHHHHH-HHTTCSSCEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHH---CCC---------CEEEECCCCCCHHHHHHHHHHH-HHHHCCCCEEEEECCHHHHHHHH
T ss_conf 999999999996---499---------7289899999950999999999-99706898999948669999999