HHsearch results for GI: 254781187 and protein with PDBid: 3h1t_A
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.82 E-value=4.9e-07 Score=60.78 Aligned_cols=170 Identities=14% Similarity=0.106 Sum_probs=87.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC-------CCCEEEEECCCHHH
Q ss_conf 66684289999999888875124555554112477614886788999999999999708-------99779997153799
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-------PGMSIICIANSETQ 119 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~-------~~~~v~~~A~t~~Q 119 (367)
....||.+|.++++++.++..++.. |..|....|+|||.++..++..++..+ ...++++++++..-
T Consensus 175 ~~~~~R~yQ~~Ai~~~~~~~~~~~~-------r~li~~aTGSGKT~~a~~li~~ll~~~~~~~~~~~~~rvl~l~dr~~L 247 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSVLQGKK-------RSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVL 247 (590)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCS-------EEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC----
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCC-------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHH
T ss_conf 7998679999999999999983799-------659988999978999999999999841132234568869999536999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC--CCCCCCCCCCCCCCCEEEE
Q ss_conf 99999999999998623121123333210001233322111134577612662101354--4556521011358628999
Q gi|254781187|r 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE--ERPDTFVGPHNTHGMAVFN 197 (367)
Q Consensus 120 ~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~ea~~g~h~~~~~l~iv 197 (367)
+.+.. ..+. ...+.. ................+..-++... ..+....-+-.....++|+
T Consensus 248 ~~Q~~-~~~~---~~~~~~---------------~~~i~~~~~~~~~~~~~~t~q~l~~~~~~~~~~~~~~~~~~~lIIi 308 (590)
T 3h1t_A 248 VDDPK-DKTF---TPFGDA---------------RHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIII 308 (590)
T ss_dssp --------CC---TTTCSS---------------EEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEE
T ss_pred HHHHH-HHHH---HHCCCC---------------CEEEECCCCCCCCCEEEEEEEEEHHHHHCHHHHHHCCCCCCEEEEE
T ss_conf 99899-9997---413665---------------4022114423566315776667202220113565427555169996
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCH-HHHHHH
Q ss_conf 754559988999989874069882589998078999876-887541
Q gi|254781187|r 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW-FYDIFN 242 (367)
Q Consensus 198 DEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~-Fye~~~ 242 (367)
|||......-.......+....+.....++++|.+..+. .++.|.
T Consensus 309 DEaHr~~~~~~~~~~~il~~~~~a~~lGlTATP~~~~~~~~~~~f~ 354 (590)
T 3h1t_A 309 DECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG 354 (590)
T ss_dssp SCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC
T ss_pred EHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEHHCC
T ss_conf 0477403232115778887643445132244652236742201025