HHsearch results for GI: 254781187 and protein with PDBid: 3l9o_A
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.3e-05 Score=52.15 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.|++||.+++..|-. +. .+.|+|..|+|||.++...++-.+. .+.++++++||..=+.++ +.+++
T Consensus 184 ~l~~~Q~~ai~~i~~----g~--------dvlv~ApTGSGKTlv~~l~i~~~l~--~~~r~l~l~Ptr~La~Q~-~~~l~ 248 (1108)
T 3l9o_A 184 TLDPFQDTAISCIDR----GE--------SVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQK-YRELL 248 (1108)
T ss_dssp CCCHHHHHHHHHHTT----TC--------CEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHH----CC--------CEEEECCCCCHHHHHHHHHHHHHHH--HCCEEEEECCHHHHHHHH-HHHHH
T ss_conf 989999999999981----99--------9999808986599999999999996--199099988979999999-99999
Q ss_pred HHH
Q ss_conf 999
Q gi|254781187|r 130 KWL 132 (367)
Q Consensus 130 k~~ 132 (367)
+..
T Consensus 249 ~~~ 251 (1108)
T 3l9o_A 249 AEF 251 (1108)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 745