HHsearch results for GI: 254781187 and protein with PDBid: 3ly5_A
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.50 E-value=0.00038 Score=43.07 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=55.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CEEEEECCCHHHH
Q ss_conf 36668428999999988887512455555411247761488678899999999999970899-----7799971537999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-----MSIICIANSETQL 120 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~-----~~v~~~A~t~~Q~ 120 (367)
.+|..|++-|++++..+-+.. .+.+.|..|+|||.....-++-.+..... ..+++.+|+...+
T Consensus 72 ~Gf~~ptpiQ~~aIp~il~g~------------dviv~A~TGSGKTlay~lpil~~~~~~~~~~~~~~~~li~~pt~el~ 139 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLLEGR------------DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELA 139 (262)
T ss_dssp TTCCBCCHHHHHHHHHHHHTC------------CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH
T ss_conf 899999999999999998699------------96678899998179999999987765124565684699956357766
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999998
Q gi|254781187|r 121 KNTLWAEVSKWLS 133 (367)
Q Consensus 121 ~~~lw~ei~k~~~ 133 (367)
.++ +..+++...
T Consensus 140 ~q~-~~~~~~l~~ 151 (262)
T 3ly5_A 140 MQT-FGVLKELMT 151 (262)
T ss_dssp HHH-HHHHHHHTT
T ss_pred HHH-HHHHHHHHH
T ss_conf 778-999999743