Query gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 367
No_of_seqs 184 out of 358
Neff 7.3
Searched_HMMs 23785
Date Wed Jun 1 01:58:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781187.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cpe_A Terminase, DNA packagin 100.0 2.8E-38 1.2E-42 252.4 27.1 308 5-351 122-457 (592)
2 2o0j_A Terminase, DNA packagin 100.0 9.9E-31 4.2E-35 206.0 20.6 244 5-292 122-385 (385)
3 1rif_A DAR protein, DNA helica 98.8 3.8E-07 1.6E-11 61.5 16.0 158 50-238 113-270 (282)
4 3h1t_A Type I site-specific re 98.8 4.9E-07 2.1E-11 60.8 16.2 170 47-242 175-354 (590)
5 1wp9_A ATP-dependent RNA helic 98.6 3.6E-07 1.5E-11 61.6 9.8 72 47-133 6-77 (494)
6 2fz4_A DNA repair protein RAD2 98.6 1E-06 4.3E-11 58.8 11.8 142 50-236 93-234 (237)
7 2oca_A DAR protein, ATP-depend 98.5 1.5E-05 6.1E-10 51.8 16.9 158 50-238 113-270 (510)
8 2xgj_A ATP-dependent RNA helic 98.4 5.5E-06 2.3E-10 54.4 11.4 68 50-132 86-153 (1010)
9 3e1s_A Exodeoxyribonuclease V, 98.3 9.1E-06 3.8E-10 53.0 11.4 142 47-242 186-332 (574)
10 3dkp_A Probable ATP-dependent 98.3 3.9E-06 1.6E-10 55.3 9.1 75 46-133 47-123 (245)
11 2zpa_A Uncharacterized protein 98.3 3.1E-06 1.3E-10 55.8 8.4 155 50-272 175-332 (671)
12 3l9o_A ATP-dependent RNA helic 98.3 1.3E-05 5.3E-10 52.2 11.2 68 50-132 184-251 (1108)
13 3b85_A Phosphate starvation-in 98.2 5.6E-06 2.4E-10 54.3 8.9 142 52-232 9-160 (208)
14 3dmq_A RNA polymerase-associat 98.2 2.7E-05 1.1E-09 50.1 12.0 169 42-233 141-319 (968)
15 2va8_A SSO2462, SKI2-type heli 98.2 2.6E-06 1.1E-10 56.4 6.7 65 47-123 27-91 (715)
16 2zj8_A DNA helicase, putative 98.2 3.7E-06 1.6E-10 55.4 6.9 65 47-123 20-84 (720)
17 2p6r_A Afuhel308 helicase; pro 98.1 5.3E-06 2.2E-10 54.4 6.2 63 47-123 22-84 (702)
18 2db3_A ATP-dependent RNA helic 98.1 2.2E-05 9.3E-10 50.6 9.1 75 45-132 73-153 (434)
19 3ber_A Probable ATP-dependent 98.1 3.3E-05 1.4E-09 49.6 9.8 79 45-136 60-139 (249)
20 2fwr_A DNA repair protein RAD2 98.1 0.00015 6.4E-09 45.5 13.0 141 50-236 93-234 (472)
21 2z0m_A 337AA long hypothetical 98.0 2.3E-05 9.6E-10 50.5 8.4 70 47-134 13-82 (337)
22 1hv8_A Putative ATP-dependent 98.0 2.8E-05 1.2E-09 50.0 8.5 76 46-133 24-99 (367)
23 3b6e_A Interferon-induced heli 98.0 7.6E-06 3.2E-10 53.5 5.6 72 50-134 33-108 (216)
24 3eiq_A Eukaryotic initiation f 98.0 2E-05 8.6E-10 50.8 7.8 76 46-134 58-134 (414)
25 1z63_A Helicase of the SNF2/RA 98.0 0.00011 4.7E-09 46.3 11.5 154 51-234 38-191 (500)
26 1w36_D RECD, exodeoxyribonucle 98.0 0.00036 1.5E-08 43.2 14.0 148 50-230 149-298 (608)
27 1wrb_A DJVLGB; RNA helicase, D 97.9 0.00011 4.8E-09 46.3 9.6 98 23-135 20-127 (253)
28 2vl7_A XPD; helicase, unknown 97.8 8.6E-05 3.6E-09 47.0 8.5 67 50-130 7-73 (540)
29 2oxc_A Probable ATP-dependent 97.8 0.00013 5.3E-09 46.0 9.2 76 45-133 41-117 (230)
30 2j0s_A ATP-dependent RNA helic 97.8 7.2E-05 3E-09 47.5 7.8 74 46-132 55-129 (410)
31 3iuy_A Probable ATP-dependent 97.8 0.00013 5.7E-09 45.8 8.5 73 46-131 38-117 (228)
32 3i5x_A ATP-dependent RNA helic 97.7 0.00017 7E-09 45.3 8.8 79 46-135 90-173 (563)
33 2gxq_A Heat resistant RNA depe 97.7 6.7E-05 2.8E-09 47.7 6.6 73 46-131 19-95 (207)
34 2w00_A HSDR, R.ECOR124I; ATP-b 97.6 0.00065 2.8E-08 41.6 10.5 167 49-233 270-441 (1038)
35 3fmo_B ATP-dependent RNA helic 97.6 0.00029 1.2E-08 43.8 8.7 75 46-131 110-185 (300)
36 2i4i_A ATP-dependent RNA helic 97.6 0.00034 1.4E-08 43.3 8.9 77 46-135 33-128 (417)
37 1z3i_X Similar to RAD54-like; 97.6 0.0021 8.7E-08 38.6 12.3 171 52-233 57-233 (644)
38 3fht_A ATP-dependent RNA helic 97.5 0.00075 3.2E-08 41.3 9.7 68 46-123 43-111 (412)
39 3crv_A XPD/RAD3 related DNA he 97.5 0.00035 1.5E-08 43.3 7.9 67 50-132 3-71 (551)
40 1t6n_A Probable ATP-dependent 97.5 0.00029 1.2E-08 43.8 7.4 77 46-135 32-109 (220)
41 2pl3_A Probable ATP-dependent 97.5 0.00069 2.9E-08 41.5 9.2 76 46-134 43-123 (236)
42 3ly5_A ATP-dependent RNA helic 97.5 0.00038 1.6E-08 43.1 7.7 75 46-133 72-151 (262)
43 1vec_A ATP-dependent RNA helic 97.5 0.00035 1.5E-08 43.3 7.4 73 46-131 21-94 (206)
44 3c6a_A Terminase large subunit 97.4 0.00014 6.1E-09 45.6 5.0 59 293-351 26-97 (232)
45 3bor_A Human initiation factor 97.4 0.00054 2.3E-08 42.1 7.8 73 46-131 48-121 (237)
46 1q0u_A Bstdead; DEAD protein, 97.4 0.00069 2.9E-08 41.5 8.3 66 46-123 22-88 (219)
47 3fmp_B ATP-dependent RNA helic 97.4 0.00094 4E-08 40.7 8.7 78 46-134 110-188 (479)
48 1qde_A EIF4A, translation init 97.4 0.0012 4.9E-08 40.1 9.1 72 46-130 32-104 (224)
49 1s2m_A Putative ATP-dependent 97.4 0.0016 6.7E-08 39.2 9.8 67 46-124 39-106 (400)
50 3llm_A ATP-dependent RNA helic 97.4 0.0061 2.6E-07 35.7 12.4 64 41-122 58-124 (235)
51 2kbe_A ATP-dependent RNA helic 97.3 0.00086 3.6E-08 40.9 7.5 69 46-124 40-109 (226)
52 2wjy_A Regulator of nonsense t 97.3 0.0083 3.5E-07 34.9 13.9 60 52-124 358-417 (800)
53 3fe2_A Probable ATP-dependent 97.3 0.0015 6.4E-08 39.4 8.5 76 46-134 47-128 (242)
54 3mwy_W Chromo domain-containin 97.2 0.0013 5.6E-08 39.7 8.1 168 50-234 236-409 (800)
55 1a5t_A Delta prime, HOLB; zinc 97.2 0.0025 1.1E-07 38.0 9.4 143 53-230 5-147 (334)
56 1gm5_A RECG; helicase, replica 97.2 0.007 3E-07 35.3 11.1 79 50-137 368-446 (780)
57 1fuu_A Yeast initiation factor 97.1 0.0013 5.4E-08 39.8 6.7 67 46-124 39-106 (394)
58 1oyw_A RECQ helicase, ATP-depe 97.0 0.00082 3.5E-08 41.0 4.9 61 47-124 22-82 (523)
59 2z83_A Helicase/nucleoside tri 97.0 0.0043 1.8E-07 36.6 8.4 43 79-122 23-65 (459)
60 3kqn_A Serine protease/ntpase/ 96.8 0.022 9.3E-07 32.2 10.8 47 79-131 10-57 (437)
61 2jlq_A Serine protease subunit 96.7 0.0084 3.5E-07 34.8 8.3 44 79-123 21-64 (451)
62 1yks_A Genome polyprotein [con 96.7 0.012 4.9E-07 34.0 9.0 44 79-123 10-53 (440)
63 2eyq_A TRCF, transcription-rep 96.7 0.029 1.2E-06 31.5 13.8 158 51-231 604-762 (1151)
64 1iqp_A RFCS; clamp loader, ext 96.6 0.033 1.4E-06 31.2 11.3 119 55-230 30-149 (327)
65 2whx_A Serine protease/ntpase/ 96.5 0.012 5E-07 33.9 7.9 44 79-123 188-231 (618)
66 1xti_A Probable ATP-dependent 96.5 0.011 4.8E-07 34.0 7.7 78 46-136 26-104 (391)
67 2v6i_A RNA helicase; membrane, 96.5 0.022 9.3E-07 32.3 9.1 135 80-238 5-142 (431)
68 1sxj_B Activator 1 37 kDa subu 96.5 0.016 6.5E-07 33.2 8.3 38 193-230 109-146 (323)
69 1sxj_E Activator 1 40 kDa subu 96.4 0.021 8.8E-07 32.4 8.7 39 193-231 136-174 (354)
70 2v1x_A ATP-dependent DNA helic 96.4 0.014 5.9E-07 33.5 7.6 84 28-129 18-105 (591)
71 1sxj_C Activator 1 40 kDa subu 96.4 0.031 1.3E-06 31.4 9.3 39 193-231 112-150 (340)
72 2qy9_A Cell division protein F 96.2 0.053 2.2E-06 29.9 9.8 119 12-135 34-153 (309)
73 2wv9_A Flavivirin protease NS2 96.2 0.034 1.4E-06 31.1 8.7 43 80-123 244-286 (673)
74 2gk6_A Regulator of nonsense t 96.2 0.021 8.8E-07 32.4 7.6 60 52-124 182-241 (624)
75 2xau_A PRE-mRNA-splicing facto 96.1 0.061 2.6E-06 29.5 13.5 161 53-244 97-262 (773)
76 2px0_A Flagellar biosynthesis 95.7 0.027 1.1E-06 31.7 6.6 40 79-118 107-146 (296)
77 2chq_A Replication factor C sm 95.7 0.017 7.2E-07 32.9 5.5 121 55-231 22-142 (319)
78 2chg_A Replication factor C sm 95.5 0.11 4.4E-06 28.1 11.8 118 56-229 23-140 (226)
79 1pjr_A PCRA; DNA repair, DNA r 95.1 0.077 3.2E-06 28.9 7.2 52 79-131 26-79 (724)
80 1sxj_D Activator 1 41 kDa subu 95.0 0.11 4.7E-06 27.9 7.9 39 193-231 135-173 (353)
81 2vsf_A XPD, DNA repair helicas 95.0 0.019 7.8E-07 32.7 3.8 55 79-135 6-60 (602)
82 1uaa_A REP helicase, protein ( 94.6 0.047 2E-06 30.2 5.0 45 79-123 17-63 (673)
83 1jr3_A DNA polymerase III subu 94.5 0.21 8.7E-06 26.3 10.8 38 193-230 121-158 (373)
84 2z4s_A Chromosomal replication 94.4 0.21 9E-06 26.2 11.6 55 53-115 114-168 (440)
85 2is6_A DNA helicase II; hydrol 94.4 0.059 2.5E-06 29.6 5.1 45 79-123 24-70 (680)
86 2gno_A DNA polymerase III, gam 94.2 0.25 1E-05 25.8 9.5 111 55-229 2-120 (305)
87 2qgz_A Helicase loader, putati 93.8 0.28 1.2E-05 25.5 9.2 70 42-115 120-190 (308)
88 2j37_W Signal recognition part 93.4 0.34 1.4E-05 25.0 14.0 102 17-120 37-143 (504)
89 2ph1_A Nucleotide-binding prot 93.3 0.11 4.4E-06 28.1 4.8 37 78-116 19-57 (262)
90 3io3_A DEHA2D07832P; chaperone 93.2 0.16 6.9E-06 26.9 5.6 45 79-123 19-65 (348)
91 3cio_A ETK, tyrosine-protein k 92.7 0.41 1.7E-05 24.5 7.2 67 43-113 72-139 (299)
92 3ec2_A DNA replication protein 92.4 0.46 1.9E-05 24.2 8.2 68 42-113 6-73 (180)
93 1wcv_1 SOJ, segregation protei 92.4 0.094 3.9E-06 28.4 3.5 39 76-116 5-45 (257)
94 1g3q_A MIND ATPase, cell divis 91.7 0.19 8.2E-06 26.5 4.5 33 79-113 4-37 (237)
95 3bfv_A CAPA1, CAPB2, membrane 91.5 0.59 2.5E-05 23.5 7.4 63 48-114 55-118 (271)
96 3la6_A Tyrosine-protein kinase 91.2 0.63 2.6E-05 23.3 7.0 66 45-114 62-128 (286)
97 1odf_A YGR205W, hypothetical 3 91.2 0.27 1.1E-05 25.6 4.8 37 78-114 32-69 (290)
98 3ice_A Transcription terminati 91.0 0.46 1.9E-05 24.2 5.8 76 27-114 135-211 (422)
99 2woj_A ATPase GET3; tail-ancho 90.8 0.44 1.8E-05 24.3 5.5 36 79-114 19-55 (354)
100 2p67_A LAO/AO transport system 90.6 0.72 3E-05 23.0 6.7 46 76-121 55-100 (341)
101 3c8u_A Fructokinase; YP_612366 90.5 0.68 2.9E-05 23.1 6.3 40 74-113 19-58 (208)
102 2gza_A Type IV secretion syste 90.5 0.33 1.4E-05 25.0 4.7 36 79-117 177-212 (361)
103 1sq5_A Pantothenate kinase; P- 90.5 0.74 3.1E-05 22.9 7.0 51 60-113 66-116 (308)
104 3p32_A Probable GTPase RV1496/ 90.4 0.71 3E-05 23.0 6.3 57 56-120 66-122 (355)
105 2w58_A DNAI, primosome compone 90.0 0.82 3.4E-05 22.6 8.3 65 45-113 24-88 (202)
106 1hyq_A MIND, cell division inh 89.6 0.48 2E-05 24.1 4.9 34 79-114 4-38 (263)
107 1cu1_A Protein (protease/helic 89.6 0.87 3.7E-05 22.5 11.0 127 78-233 211-342 (645)
108 1ihu_A Arsenical pump-driving 89.6 0.39 1.6E-05 24.6 4.4 25 87-113 18-42 (589)
109 1fnn_A CDC6P, cell division co 89.4 0.9 3.8E-05 22.4 9.1 58 55-113 22-79 (389)
110 3aez_A Pantothenate kinase; tr 89.3 0.91 3.8E-05 22.3 7.9 37 77-113 90-126 (312)
111 3kjh_A CO dehydrogenase/acetyl 89.0 0.33 1.4E-05 25.1 3.7 34 79-114 2-35 (254)
112 2afh_E Nitrogenase iron protei 88.9 0.51 2.1E-05 23.9 4.6 35 77-113 2-36 (289)
113 2qm8_A GTPase/ATPase; G protei 88.9 0.98 4.1E-05 22.1 6.6 40 75-116 53-92 (337)
114 1sky_E F1-ATPase, F1-ATP synth 88.8 0.99 4.2E-05 22.1 7.3 45 79-123 153-198 (473)
115 3b9q_A Chloroplast SRP recepto 88.7 1 4.2E-05 22.1 6.2 52 80-135 103-154 (302)
116 2oap_1 GSPE-2, type II secreti 88.7 0.81 3.4E-05 22.7 5.6 35 79-116 262-296 (511)
117 1cp2_A CP2, nitrogenase iron p 88.7 0.7 3E-05 23.0 5.2 35 77-113 1-35 (269)
118 3cwq_A Para family chromosome 88.4 0.61 2.6E-05 23.4 4.8 34 80-115 3-37 (209)
119 3e70_C DPA, signal recognition 88.3 1.1 4.5E-05 21.9 12.4 53 79-135 131-183 (328)
120 1c4o_A DNA nucleotide excision 88.2 1.1 4.6E-05 21.9 9.4 71 50-133 8-78 (664)
121 2qen_A Walker-type ATPase; unk 87.7 0.7 2.9E-05 23.1 4.7 34 57-98 19-52 (350)
122 3k9g_A PF-32 protein; ssgcid, 87.7 0.57 2.4E-05 23.6 4.3 32 80-114 30-62 (267)
123 2pt7_A CAG-ALFA; ATPase, prote 87.5 1.2 4.9E-05 21.7 5.8 36 79-117 173-208 (330)
124 2h5e_A Peptide chain release f 87.5 1.2 5.1E-05 21.6 7.2 141 77-241 13-155 (529)
125 2o52_A RAS-related protein RAB 87.5 0.41 1.7E-05 24.5 3.4 23 76-98 24-46 (200)
126 1wms_A RAB-9, RAB9, RAS-relate 87.5 0.44 1.9E-05 24.3 3.6 25 74-98 4-28 (177)
127 3l0o_A Transcription terminati 87.3 1.1 4.7E-05 21.8 5.5 78 26-117 138-215 (427)
128 2p65_A Hypothetical protein PF 87.2 1.2 5.2E-05 21.5 9.2 123 79-254 45-184 (187)
129 1njg_A DNA polymerase III subu 87.2 1.3 5.3E-05 21.5 14.0 37 193-229 128-164 (250)
130 2f9l_A RAB11B, member RAS onco 87.0 0.48 2E-05 24.1 3.5 23 76-98 4-26 (199)
131 1j8m_F SRP54, signal recogniti 87.0 1.3 5.4E-05 21.4 6.4 53 79-135 100-152 (297)
132 2oil_A CATX-8, RAS-related pro 86.7 0.51 2.2E-05 23.9 3.5 25 75-99 23-47 (193)
133 3ea0_A ATPase, para family; al 86.4 0.93 3.9E-05 22.3 4.7 34 79-113 6-40 (245)
134 1uj2_A Uridine-cytidine kinase 86.3 0.53 2.2E-05 23.8 3.4 24 78-101 23-46 (252)
135 1e2k_A Thymidine kinase; trans 86.2 0.52 2.2E-05 23.8 3.4 26 75-100 2-27 (331)
136 2r44_A Uncharacterized protein 86.2 1.4 5.9E-05 21.2 10.2 42 194-235 112-164 (331)
137 1lw7_A Transcriptional regulat 86.2 0.41 1.7E-05 24.5 2.8 25 76-100 169-193 (365)
138 1rj9_A FTSY, signal recognitio 86.1 1.3 5.5E-05 21.4 5.4 39 79-118 104-142 (304)
139 3igf_A ALL4481 protein; two-do 86.1 0.42 1.8E-05 24.4 2.9 25 87-113 12-36 (374)
140 1z08_A RAS-related protein RAB 86.0 0.57 2.4E-05 23.6 3.5 24 75-98 4-27 (170)
141 2erx_A GTP-binding protein DI- 85.8 0.61 2.5E-05 23.4 3.5 23 76-98 2-24 (172)
142 1zbd_A Rabphilin-3A; G protein 85.6 0.63 2.6E-05 23.3 3.5 23 76-98 7-29 (203)
143 2g6b_A RAS-related protein RAB 85.1 0.69 2.9E-05 23.1 3.5 24 75-98 8-31 (180)
144 2a5j_A RAS-related protein RAB 85.0 0.85 3.6E-05 22.5 4.0 24 75-98 19-42 (191)
145 1fx0_B ATP synthase beta chain 84.9 0.92 3.9E-05 22.3 4.1 45 79-123 167-212 (498)
146 2woo_A ATPase GET3; tail-ancho 84.7 1.3 5.6E-05 21.3 4.9 46 76-123 18-64 (329)
147 2gf9_A RAS-related protein RAB 84.6 0.87 3.6E-05 22.5 3.9 25 74-98 19-43 (189)
148 3dz8_A RAS-related protein RAB 84.6 0.66 2.8E-05 23.2 3.3 23 76-98 22-44 (191)
149 3dm5_A SRP54, signal recogniti 84.5 1.7 7.1E-05 20.7 13.5 53 79-135 102-154 (443)
150 1g16_A RAS-related protein SEC 84.4 0.73 3E-05 23.0 3.4 23 76-98 2-24 (170)
151 2qe7_A ATP synthase subunit al 84.2 1.3 5.4E-05 21.4 4.6 43 79-122 164-207 (502)
152 3cpj_B GTP-binding protein YPT 84.1 0.79 3.3E-05 22.7 3.5 23 76-98 12-34 (223)
153 1kao_A RAP2A; GTP-binding prot 84.1 0.74 3.1E-05 22.9 3.4 21 78-98 4-24 (167)
154 3cph_A RAS-related protein SEC 84.1 0.76 3.2E-05 22.8 3.4 24 75-98 18-41 (213)
155 3dpu_A RAB family protein; roc 83.9 1.8 7.6E-05 20.5 7.2 46 53-98 17-62 (535)
156 2nzj_A GTP-binding protein REM 83.8 0.83 3.5E-05 22.6 3.5 23 76-98 3-25 (175)
157 2bme_A RAB4A, RAS-related prot 83.5 0.83 3.5E-05 22.6 3.4 23 76-98 9-31 (186)
158 2fn4_A P23, RAS-related protei 83.3 1 4.2E-05 22.1 3.8 27 73-99 5-31 (181)
159 1r2q_A RAS-related protein RAB 83.3 0.85 3.6E-05 22.5 3.4 22 77-98 6-27 (170)
160 2ffh_A Protein (FFH); SRP54, s 83.3 1.9 8E-05 20.4 8.4 40 80-120 101-140 (425)
161 2ck3_A ATP synthase alpha chai 83.3 1.2 5.2E-05 21.6 4.2 28 79-106 164-191 (510)
162 1qvr_A CLPB protein; coiled co 83.3 1.6 6.8E-05 20.8 4.8 50 53-102 561-613 (854)
163 2if2_A Dephospho-COA kinase; a 83.2 0.69 2.9E-05 23.1 2.9 30 77-112 1-30 (204)
164 2qby_B CDC6 homolog 3, cell di 83.1 1.2 5E-05 21.6 4.1 58 54-113 24-87 (384)
165 2ew1_A RAS-related protein RAB 83.1 1 4.2E-05 22.1 3.7 27 72-98 21-47 (201)
166 1mh1_A RAC1; GTP-binding, GTPa 83.0 0.99 4.2E-05 22.1 3.6 24 75-98 3-26 (186)
167 1xtq_A GTP-binding protein RHE 82.9 0.98 4.1E-05 22.2 3.6 26 74-99 3-28 (177)
168 3fkq_A NTRC-like two-domain pr 82.9 2 8.3E-05 20.3 7.8 33 79-113 145-178 (373)
169 2j0v_A RAC-like GTP-binding pr 82.9 1.2 5E-05 21.6 4.0 28 72-99 4-31 (212)
170 1cr0_A DNA primase/helicase; R 82.5 1.9 8.2E-05 20.3 5.0 35 80-115 38-72 (296)
171 2iut_A DNA translocase FTSK; n 82.5 1.8 7.5E-05 20.6 4.8 46 72-117 209-256 (574)
172 3lw7_A Adenylate kinase relate 82.5 0.87 3.6E-05 22.5 3.2 32 77-114 1-32 (179)
173 2hup_A RAS-related protein RAB 82.4 0.96 4E-05 22.2 3.4 23 76-98 28-50 (201)
174 1vg8_A RAS-related protein RAB 82.4 1 4.3E-05 22.0 3.5 24 76-99 7-30 (207)
175 3iqw_A Tail-anchored protein t 82.3 2 8.5E-05 20.2 5.0 47 76-124 15-62 (334)
176 2p5s_A RAS and EF-hand domain 82.2 1 4.2E-05 22.1 3.4 23 76-98 27-49 (199)
177 1oix_A RAS-related protein RAB 82.1 1 4.2E-05 22.1 3.4 25 75-99 27-51 (191)
178 2gf0_A GTP-binding protein DI- 82.1 1 4.4E-05 22.0 3.5 24 75-98 6-29 (199)
179 2qby_A CDC6 homolog 1, cell di 82.1 1.5 6.2E-05 21.1 4.2 58 54-113 24-82 (386)
180 3gj0_A GTP-binding nuclear pro 82.0 0.6 2.5E-05 23.5 2.2 24 75-98 13-36 (221)
181 2j69_A Bacterial dynamin-like 82.0 2.1 9E-05 20.1 5.6 39 53-98 52-90 (695)
182 1xjc_A MOBB protein homolog; s 81.9 1.8 7.5E-05 20.6 4.6 42 77-120 4-45 (169)
183 2ius_A DNA translocase FTSK; n 81.8 1.9 7.9E-05 20.4 4.7 45 72-116 162-208 (512)
184 1u8z_A RAS-related protein RAL 81.7 1.1 4.8E-05 21.8 3.5 23 76-98 3-25 (168)
185 3oes_A GTPase rhebl1; small GT 81.6 1.1 4.6E-05 21.8 3.4 26 73-98 20-45 (201)
186 1z0f_A RAB14, member RAS oncog 81.6 1.3 5.5E-05 21.4 3.8 26 73-98 11-36 (179)
187 1jbk_A CLPB protein; beta barr 81.5 2.2 9.4E-05 20.0 10.4 139 55-256 27-185 (195)
188 2dpx_A GTP-binding protein RAD 81.2 1.2 5.2E-05 21.6 3.5 23 75-97 5-27 (174)
189 2fu5_C RAS-related protein RAB 80.9 0.59 2.5E-05 23.5 1.8 24 75-98 6-29 (183)
190 2bov_A RAla, RAS-related prote 80.5 1.4 6.1E-05 21.1 3.7 25 75-99 12-36 (206)
191 2og2_A Putative signal recogni 80.5 2.4 0.0001 19.7 13.6 52 80-135 160-211 (359)
192 3kkq_A RAS-related protein M-R 80.4 1.2 5.2E-05 21.5 3.4 23 77-99 18-40 (183)
193 1of1_A Thymidine kinase; trans 80.4 1.4 5.8E-05 21.3 3.6 27 73-99 45-71 (376)
194 2cjw_A GTP-binding protein GEM 80.4 1.4 5.8E-05 21.3 3.6 24 75-98 4-27 (192)
195 1gvn_B Zeta; postsegregational 80.2 2.5 0.0001 19.7 5.6 48 51-100 9-56 (287)
196 3bc1_A RAS-related protein RAB 80.2 1.4 5.8E-05 21.2 3.5 23 76-98 10-32 (195)
197 1yzq_A Small GTP binding prote 80.1 1.1 4.8E-05 21.8 3.1 22 78-99 7-28 (170)
198 2ce2_X GTPase HRAS; signaling 80.0 1.2 5.2E-05 21.5 3.3 21 78-98 4-24 (166)
199 1ye8_A Protein THEP1, hypothet 80.0 1.2 5.1E-05 21.6 3.2 62 190-255 98-162 (178)
200 2fna_A Conserved hypothetical 79.9 2.1 8.7E-05 20.2 4.4 20 79-98 32-51 (357)
201 1p9r_A General secretion pathw 79.6 2.6 0.00011 19.6 6.5 50 53-114 153-202 (418)
202 2j28_9 Signal recognition part 79.4 2.4 0.0001 19.8 4.6 43 79-122 101-149 (430)
203 1p6x_A Thymidine kinase; P-loo 79.4 1.5 6.3E-05 21.0 3.5 27 74-100 4-30 (334)
204 2il1_A RAB12; G-protein, GDP, 79.3 1.2 5.1E-05 21.6 3.0 24 75-98 24-47 (192)
205 2cdn_A Adenylate kinase; phosp 79.2 2 8.5E-05 20.2 4.1 33 75-113 19-51 (201)
206 2qag_B Septin-6, protein NEDD5 79.1 1.6 6.7E-05 20.9 3.6 49 41-98 15-63 (427)
207 3c5c_A RAS-like protein 12; GD 79.1 1.6 6.6E-05 20.9 3.5 24 75-98 19-42 (187)
208 2qnr_A Septin-2, protein NEDD5 79.1 1.2 4.9E-05 21.7 2.9 23 76-98 17-39 (301)
209 2ewv_A Twitching motility prot 78.7 2.8 0.00012 19.4 5.3 35 79-114 138-172 (372)
210 2fsf_A Preprotein translocase 78.7 1.9 7.8E-05 20.5 3.8 54 79-136 90-143 (853)
211 1c1y_A RAS-related protein RAP 78.7 1.5 6.4E-05 21.0 3.4 21 78-98 4-24 (167)
212 1ukz_A Uridylate kinase; trans 78.7 2 8.3E-05 20.3 4.0 39 70-113 8-46 (203)
213 1z06_A RAS-related protein RAB 78.7 1.7 7E-05 20.8 3.5 24 75-98 18-41 (189)
214 3iij_A Coilin-interacting nucl 78.6 1.3 5.5E-05 21.4 3.0 25 77-101 11-35 (180)
215 3clv_A RAB5 protein, putative; 78.6 1.5 6.4E-05 21.0 3.4 24 76-99 6-29 (208)
216 2jeo_A Uridine-cytidine kinase 78.6 1.5 6.5E-05 20.9 3.4 24 78-101 26-49 (245)
217 3bbp_A RAB-6, RAS-related prot 78.6 1.4 5.7E-05 21.3 3.1 22 77-98 16-37 (211)
218 3kl4_A SRP54, signal recogniti 78.5 2.8 0.00012 19.4 6.5 53 79-135 99-151 (433)
219 1zuh_A Shikimate kinase; alpha 78.5 1.4 6E-05 21.1 3.2 28 74-101 4-31 (168)
220 2aka_B Dynamin-1; fusion prote 78.5 2.8 0.00012 19.4 5.4 42 57-98 6-47 (299)
221 1byi_A Dethiobiotin synthase; 78.2 2.9 0.00012 19.3 5.2 35 79-115 3-38 (224)
222 2npi_A Protein CLP1; CLP1-PCF1 78.0 2.8 0.00012 19.3 4.6 28 77-104 138-165 (460)
223 1z0j_A RAB-22, RAS-related pro 77.9 1.6 6.9E-05 20.8 3.4 21 78-98 7-27 (170)
224 2fg5_A RAB-22B, RAS-related pr 77.5 1.6 6.8E-05 20.8 3.2 22 77-98 23-44 (192)
225 2v3c_C SRP54, signal recogniti 77.4 3 0.00013 19.2 6.6 39 79-118 101-139 (432)
226 2ck3_D ATP synthase beta chain 77.3 3 0.00013 19.2 6.4 45 79-123 155-200 (482)
227 2atx_A Small GTP binding prote 77.3 2.1 8.9E-05 20.1 3.8 27 72-98 13-39 (194)
228 1x3s_A RAS-related protein RAB 77.3 2 8.5E-05 20.2 3.7 23 76-98 14-36 (195)
229 1rz3_A Hypothetical protein rb 77.0 3.1 0.00013 19.1 7.5 35 78-112 23-57 (201)
230 3con_A GTPase NRAS; structural 76.7 1.9 7.9E-05 20.4 3.4 22 77-98 21-42 (190)
231 1ky3_A GTP-binding protein YPT 76.5 2.1 8.7E-05 20.2 3.5 23 76-98 7-29 (182)
232 2f7s_A C25KG, RAS-related prot 76.5 2.1 8.6E-05 20.2 3.5 23 76-98 24-46 (217)
233 3cbq_A GTP-binding protein REM 76.2 1.2 5E-05 21.6 2.2 22 76-97 22-43 (195)
234 3ihw_A Centg3; RAS, centaurin, 76.1 2.4 0.0001 19.8 3.8 25 74-98 17-41 (184)
235 2fv8_A H6, RHO-related GTP-bin 76.0 2.4 9.9E-05 19.8 3.7 25 75-99 23-47 (207)
236 1dek_A Deoxynucleoside monopho 75.9 2 8.5E-05 20.2 3.4 43 77-127 1-43 (241)
237 2iwr_A Centaurin gamma 1; ANK 75.7 1.7 7.2E-05 20.7 3.0 22 77-98 7-28 (178)
238 2wkq_A NPH1-1, RAS-related C3 75.6 2.9 0.00012 19.3 4.1 43 56-99 135-177 (332)
239 2efe_B Small GTP-binding prote 75.4 2.1 8.8E-05 20.1 3.3 24 76-99 11-34 (181)
240 2e87_A Hypothetical protein PH 75.3 3.4 0.00014 18.8 5.7 41 57-98 148-188 (357)
241 2hxs_A RAB-26, RAS-related pro 75.3 2.1 9E-05 20.1 3.4 21 78-98 7-27 (178)
242 2ged_A SR-beta, signal recogni 75.3 3.4 0.00014 18.8 4.6 21 78-98 49-69 (193)
243 1gwn_A RHO-related GTP-binding 75.3 2.2 9.4E-05 20.0 3.4 25 74-98 25-49 (205)
244 2v1u_A Cell division control p 75.0 3.5 0.00015 18.8 5.0 23 79-101 46-68 (387)
245 1ek0_A Protein (GTP-binding pr 74.9 2.1 8.8E-05 20.1 3.2 21 78-98 4-24 (170)
246 1hqc_A RUVB; extended AAA-ATPa 74.8 1.5 6.4E-05 21.0 2.5 45 55-100 17-61 (324)
247 2x2e_A Dynamin-1; nitration, h 74.8 2.5 0.0001 19.7 3.6 39 60-98 9-47 (341)
248 1zu4_A FTSY; GTPase, signal re 74.6 3.6 0.00015 18.7 9.3 50 80-133 108-157 (320)
249 1qf9_A UMP/CMP kinase, protein 74.2 2.3 9.5E-05 19.9 3.3 22 79-100 8-29 (194)
250 2qt1_A Nicotinamide riboside k 74.1 3 0.00013 19.2 3.8 24 76-99 20-43 (207)
251 3ch4_B Pmkase, phosphomevalona 73.6 2.6 0.00011 19.6 3.4 22 79-100 13-34 (202)
252 2p5t_B PEZT; postsegregational 73.5 3.8 0.00016 18.5 5.7 48 50-99 7-54 (253)
253 1vma_A Cell division protein F 73.4 3.8 0.00016 18.5 10.2 107 13-135 49-158 (306)
254 2zej_A Dardarin, leucine-rich 73.2 1.9 8.1E-05 20.4 2.7 21 77-97 2-22 (184)
255 2qz4_A Paraplegin; AAA+, SPG7, 73.2 3.9 0.00016 18.5 5.5 53 48-101 8-63 (262)
256 2c61_A A-type ATP synthase non 73.1 1.8 7.4E-05 20.6 2.5 45 79-123 154-202 (469)
257 1y63_A LMAJ004144AAA protein; 73.0 2.8 0.00012 19.4 3.5 26 75-100 8-33 (184)
258 1d2n_A N-ethylmaleimide-sensit 73.0 3.9 0.00016 18.5 4.9 22 78-99 65-86 (272)
259 2g3y_A GTP-binding protein GEM 72.9 2.9 0.00012 19.3 3.5 23 76-98 36-58 (211)
260 2a9k_A RAS-related protein RAL 72.5 3 0.00012 19.2 3.5 23 76-98 17-39 (187)
261 3jvv_A Twitching mobility prot 72.5 4 0.00017 18.4 5.2 37 79-116 125-161 (356)
262 2dyk_A GTP-binding protein; GT 72.2 2.8 0.00012 19.3 3.4 22 77-98 1-22 (161)
263 1ak2_A Adenylate kinase isoenz 72.1 2.8 0.00012 19.4 3.3 36 73-113 12-47 (233)
264 1tf5_A Preprotein translocase 72.1 2.8 0.00012 19.3 3.3 54 79-136 99-152 (844)
265 3ney_A 55 kDa erythrocyte memb 71.8 3.2 0.00013 19.0 3.6 21 79-99 21-41 (197)
266 2r9v_A ATP synthase subunit al 71.8 3.3 0.00014 18.9 3.6 21 79-99 177-197 (515)
267 1w36_B RECB, exodeoxyribonucle 71.7 4.2 0.00018 18.3 7.7 40 192-232 378-417 (1180)
268 1m7b_A RND3/RHOE small GTP-bin 71.6 3 0.00013 19.2 3.4 22 77-98 7-28 (184)
269 2atv_A RERG, RAS-like estrogen 71.6 3 0.00013 19.2 3.4 21 78-98 29-49 (196)
270 2rex_B RHO-related GTP-binding 71.2 3.1 0.00013 19.1 3.4 23 76-98 9-31 (197)
271 2jaq_A Deoxyguanosine kinase; 71.0 3.6 0.00015 18.7 3.7 23 79-101 2-24 (205)
272 2gco_A H9, RHO-related GTP-bin 70.9 3.2 0.00013 19.0 3.4 23 77-99 25-47 (201)
273 1e4v_A Adenylate kinase; trans 70.9 2.8 0.00012 19.4 3.1 23 79-101 2-24 (214)
274 3ez2_A Plasmid partition prote 70.5 4.5 0.00019 18.1 7.1 56 59-114 89-150 (398)
275 2grj_A Dephospho-COA kinase; T 70.0 3.4 0.00014 18.8 3.4 34 73-112 9-42 (192)
276 2eyu_A Twitching motility prot 69.9 4.6 0.00019 18.0 5.0 36 79-115 27-62 (261)
277 2qag_A Septin-2, protein NEDD5 69.8 2.6 0.00011 19.6 2.7 25 74-98 34-58 (361)
278 1tev_A UMP-CMP kinase; ploop, 69.8 3.4 0.00014 18.8 3.4 23 78-100 4-26 (196)
279 3bwd_D RAC-like GTP-binding pr 69.4 3.3 0.00014 18.9 3.2 22 77-98 8-29 (182)
280 2i3b_A HCR-ntpase, human cance 69.0 3.1 0.00013 19.1 3.0 21 79-99 3-23 (189)
281 3a1s_A Iron(II) transport prot 68.1 4.2 0.00018 18.3 3.5 23 76-98 4-26 (258)
282 1r6b_X CLPA protein; AAA+, N-t 68.0 5 0.00021 17.8 5.2 46 54-99 462-510 (758)
283 3def_A T7I23.11 protein; chlor 67.9 5.1 0.00021 17.8 5.8 43 51-98 15-57 (262)
284 1z2a_A RAS-related protein RAB 67.9 4 0.00017 18.4 3.4 22 77-98 5-26 (168)
285 3lxw_A GTPase IMAP family memb 67.8 4 0.00017 18.4 3.4 24 75-98 19-42 (247)
286 1zd9_A ADP-ribosylation factor 67.6 4.1 0.00017 18.3 3.4 22 77-98 22-43 (188)
287 1iy2_A ATP-dependent metallopr 67.6 5.1 0.00022 17.7 4.9 62 48-115 42-106 (278)
288 2f6r_A COA synthase, bifunctio 67.6 3.7 0.00016 18.6 3.1 24 75-98 73-96 (281)
289 1knq_A Gluconate kinase; ALFA/ 67.5 3.5 0.00015 18.8 3.0 21 80-100 11-31 (175)
290 1h65_A Chloroplast outer envel 67.5 5.2 0.00022 17.7 5.9 43 51-98 18-60 (270)
291 1fx0_A ATP synthase alpha chai 67.4 4.4 0.00019 18.2 3.5 22 79-100 165-186 (507)
292 1ly1_A Polynucleotide kinase; 67.4 3.5 0.00015 18.7 3.0 20 80-99 5-24 (181)
293 2w0m_A SSO2452; RECA, SSPF, un 67.1 5.3 0.00022 17.7 6.4 35 79-115 25-59 (235)
294 2qag_C Septin-7; cell cycle, c 67.0 3.4 0.00014 18.9 2.8 24 75-98 29-52 (418)
295 2bbw_A Adenylate kinase 4, AK4 66.9 4 0.00017 18.4 3.2 37 76-117 26-62 (246)
296 2q3h_A RAS homolog gene family 66.8 4.4 0.00018 18.2 3.4 22 77-98 20-41 (201)
297 3ez9_A Para; DNA binding, wing 66.6 1.9 8E-05 20.4 1.5 36 79-114 113-153 (403)
298 1aky_A Adenylate kinase; ATP:A 66.6 4.1 0.00017 18.4 3.2 32 78-114 5-36 (220)
299 3kb2_A SPBC2 prophage-derived 66.5 4.2 0.00018 18.3 3.3 23 79-101 3-25 (173)
300 2wji_A Ferrous iron transport 66.5 4.5 0.00019 18.1 3.4 21 78-98 4-24 (165)
301 2j1l_A RHO-related GTP-binding 66.4 4.2 0.00018 18.3 3.2 22 77-98 34-55 (214)
302 1z6t_A APAF-1, apoptotic prote 66.3 5.4 0.00023 17.6 5.4 55 55-113 129-186 (591)
303 2oze_A ORF delta'; para, walke 66.2 5.5 0.00023 17.6 5.7 33 79-113 38-71 (298)
304 2www_A Methylmalonic aciduria 66.2 5.5 0.00023 17.6 8.9 99 12-122 13-117 (349)
305 3euj_A Chromosome partition pr 66.1 4.9 0.00021 17.9 3.5 22 80-101 32-53 (483)
306 2iyv_A Shikimate kinase, SK; t 65.8 3.8 0.00016 18.5 2.9 22 79-100 4-25 (184)
307 2ff7_A Alpha-hemolysin translo 65.7 3.5 0.00015 18.8 2.7 20 79-98 37-56 (247)
308 2d7d_A Uvrabc system protein B 65.7 5.6 0.00024 17.5 9.5 66 55-133 17-82 (661)
309 3dl0_A Adenylate kinase; phosp 65.6 4.4 0.00019 18.1 3.2 31 79-114 2-32 (216)
310 2gj8_A MNME, tRNA modification 65.2 4.6 0.00019 18.0 3.3 21 78-98 5-25 (172)
311 1zd8_A GTP:AMP phosphotransfer 65.1 4.3 0.00018 18.2 3.1 40 75-119 5-44 (227)
312 2bdt_A BH3686; alpha-beta prot 65.1 4.2 0.00018 18.3 3.0 29 80-113 5-33 (189)
313 1m2o_B GTP binding, GTP-bindin 65.1 4.3 0.00018 18.2 3.1 20 78-97 24-43 (190)
314 1osn_A Thymidine kinase, VZV-T 65.0 3.4 0.00015 18.8 2.6 38 76-115 11-48 (341)
315 2bcg_Y Protein YP2, GTP-bindin 64.9 5.8 0.00024 17.4 3.8 25 74-98 5-29 (206)
316 1kht_A Adenylate kinase; phosp 64.7 5.9 0.00025 17.4 4.9 30 79-108 5-34 (192)
317 2xb4_A Adenylate kinase; ATP-b 64.6 4.6 0.0002 18.0 3.2 23 79-101 2-24 (223)
318 2wjg_A FEOB, ferrous iron tran 64.5 5.2 0.00022 17.7 3.4 22 77-98 7-28 (188)
319 2dpy_A FLII, flagellum-specifi 64.5 5.2 0.00022 17.7 3.4 22 79-100 159-180 (438)
320 3l0i_B RAS-related protein RAB 64.4 1.6 6.6E-05 20.9 0.7 23 75-97 31-53 (199)
321 1np6_A Molybdopterin-guanine d 64.4 5.9 0.00025 17.4 4.2 38 79-118 8-45 (174)
322 1uf9_A TT1252 protein; P-loop, 64.2 4.5 0.00019 18.1 3.0 30 78-113 9-38 (203)
323 1ksh_A ARF-like protein 2; sma 64.0 4.9 0.00021 17.9 3.2 20 78-97 19-38 (186)
324 1jjv_A Dephospho-COA kinase; P 63.8 4.9 0.00021 17.9 3.2 28 79-112 4-31 (206)
325 1zak_A Adenylate kinase; ATP:A 63.8 4.3 0.00018 18.2 2.9 23 79-101 7-29 (222)
326 1sgw_A Putative ABC transporte 63.7 3.6 0.00015 18.7 2.5 20 79-98 37-56 (214)
327 3mfy_A V-type ATP synthase alp 63.6 5.7 0.00024 17.5 3.5 22 79-100 229-250 (588)
328 3hdt_A Putative kinase; struct 63.4 4.4 0.00018 18.2 2.9 22 80-101 17-38 (223)
329 1nks_A Adenylate kinase; therm 63.4 6.2 0.00026 17.3 4.8 30 79-108 3-32 (194)
330 1nkt_A Preprotein translocase 63.1 3.7 0.00015 18.6 2.4 55 79-137 127-181 (922)
331 3bos_A Putative DNA replicatio 62.9 6.3 0.00027 17.2 4.9 21 80-100 55-75 (242)
332 2nq2_C Hypothetical ABC transp 62.8 3.9 0.00017 18.5 2.5 20 79-98 33-52 (253)
333 1in4_A RUVB, holliday junction 62.6 6.4 0.00027 17.2 4.0 26 193-218 104-129 (334)
334 2ghi_A Transport protein; mult 62.6 4.3 0.00018 18.2 2.7 21 79-99 48-68 (260)
335 2cbz_A Multidrug resistance-as 62.5 4.3 0.00018 18.2 2.7 20 79-98 33-52 (237)
336 3fb4_A Adenylate kinase; psych 61.7 5.8 0.00024 17.4 3.2 30 79-113 2-31 (216)
337 3gqb_A V-type ATP synthase alp 61.6 6.7 0.00028 17.1 4.7 22 79-100 223-244 (578)
338 1a7j_A Phosphoribulokinase; tr 61.3 4.4 0.00018 18.2 2.6 33 79-113 7-39 (290)
339 2h17_A ADP-ribosylation factor 61.2 5.1 0.00021 17.8 2.9 22 77-98 21-42 (181)
340 2rgx_A Adenylate kinase; trans 61.0 6 0.00025 17.3 3.2 30 79-113 2-31 (206)
341 1svm_A Large T antigen; AAA+ f 60.8 6.9 0.00029 17.0 5.2 32 78-114 170-201 (377)
342 1mv5_A LMRA, multidrug resista 60.7 4.8 0.0002 17.9 2.7 21 79-99 30-50 (243)
343 3gqb_B V-type ATP synthase bet 60.7 4 0.00017 18.4 2.2 23 79-101 149-171 (464)
344 3pfi_A Holliday junction ATP-d 60.5 7 0.00029 16.9 3.7 21 79-99 57-77 (338)
345 3end_A Light-independent proto 60.4 7 0.00029 16.9 5.0 33 79-113 43-75 (307)
346 2bwj_A Adenylate kinase 5; pho 60.1 5.5 0.00023 17.6 2.9 23 79-101 14-36 (199)
347 2qu8_A Putative nucleolar GTP- 60.1 6.9 0.00029 17.0 3.4 24 74-97 26-49 (228)
348 3bh0_A DNAB-like replicative h 60.1 7.1 0.0003 16.9 6.3 43 80-124 71-115 (315)
349 1e6c_A Shikimate kinase; phosp 60.1 5.9 0.00025 17.4 3.0 22 80-101 5-26 (173)
350 2pze_A Cystic fibrosis transme 59.9 5.1 0.00021 17.8 2.7 20 79-98 36-55 (229)
351 1yqt_A RNAse L inhibitor; ATP- 59.8 6.5 0.00027 17.1 3.2 20 79-98 49-68 (538)
352 3gmt_A Adenylate kinase; ssgci 59.7 6.4 0.00027 17.1 3.2 34 79-117 10-43 (230)
353 1nrj_B SR-beta, signal recogni 59.6 7 0.0003 16.9 3.4 23 76-98 11-33 (218)
354 2plr_A DTMP kinase, probable t 59.5 7.3 0.0003 16.8 5.5 33 80-115 7-39 (213)
355 2pt5_A Shikimate kinase, SK; a 59.5 6.5 0.00027 17.1 3.2 23 79-101 2-24 (168)
356 1via_A Shikimate kinase; struc 59.3 6 0.00025 17.3 3.0 23 79-101 6-28 (175)
357 1upt_A ARL1, ADP-ribosylation 59.1 7.4 0.00031 16.8 3.4 21 78-98 8-28 (171)
358 2x77_A ADP-ribosylation factor 59.0 4.3 0.00018 18.2 2.2 21 77-97 22-42 (189)
359 1zp6_A Hypothetical protein AT 58.9 5.9 0.00025 17.4 2.9 30 80-114 12-41 (191)
360 2ixe_A Antigen peptide transpo 58.9 5.5 0.00023 17.6 2.7 21 79-99 47-67 (271)
361 2pjz_A Hypothetical protein ST 58.8 5.4 0.00023 17.6 2.7 21 79-99 32-52 (263)
362 3i8s_A Ferrous iron transport 58.8 7 0.00029 16.9 3.2 21 78-98 4-24 (274)
363 3gfo_A Cobalt import ATP-bindi 58.7 5.1 0.00021 17.8 2.5 20 79-98 36-55 (275)
364 1q57_A DNA primase/helicase; d 58.6 7.5 0.00032 16.7 3.8 35 80-115 245-279 (503)
365 3hws_A ATP-dependent CLP prote 58.5 7.6 0.00032 16.7 4.0 21 80-100 54-74 (363)
366 3llu_A RAS-related GTP-binding 58.5 6.7 0.00028 17.0 3.1 22 76-97 19-40 (196)
367 2dr3_A UPF0273 protein PH0284; 58.1 7.7 0.00032 16.7 6.2 43 79-121 25-67 (247)
368 2iw3_A Elongation factor 3A; a 58.0 7.3 0.00031 16.8 3.2 20 79-98 463-482 (986)
369 2zu0_C Probable ATP-dependent 57.7 6.8 0.00028 17.0 3.0 20 79-98 48-67 (267)
370 1qhx_A CPT, protein (chloramph 57.7 6.8 0.00028 17.0 3.0 20 80-99 6-25 (178)
371 1l2t_A Hypothetical ABC transp 57.3 6.5 0.00027 17.1 2.9 20 79-98 33-52 (235)
372 2qi9_C Vitamin B12 import ATP- 57.3 5.5 0.00023 17.6 2.5 21 79-99 28-48 (249)
373 1tq4_A IIGP1, interferon-induc 57.3 6.3 0.00027 17.2 2.8 22 77-98 69-90 (413)
374 2h57_A ADP-ribosylation factor 57.3 5.6 0.00024 17.5 2.5 22 77-98 21-42 (190)
375 2d2e_A SUFC protein; ABC-ATPas 57.1 7.1 0.0003 16.9 3.0 20 79-98 31-50 (250)
376 2bbs_A Cystic fibrosis transme 57.0 5.8 0.00024 17.4 2.6 20 79-98 66-85 (290)
377 1ixz_A ATP-dependent metallopr 57.0 8 0.00034 16.6 4.3 62 46-115 16-82 (254)
378 3ld9_A DTMP kinase, thymidylat 56.8 8.1 0.00034 16.5 4.1 39 76-115 21-59 (223)
379 2b6h_A ADP-ribosylation factor 56.6 7.5 0.00031 16.8 3.1 21 77-97 29-49 (192)
380 2f1r_A Molybdopterin-guanine d 56.3 4.6 0.00019 18.0 2.0 35 80-116 5-39 (171)
381 1vht_A Dephospho-COA kinase; s 56.3 7.9 0.00033 16.6 3.2 29 78-112 5-33 (218)
382 1kag_A SKI, shikimate kinase I 55.9 7.6 0.00032 16.7 3.0 23 79-101 6-28 (173)
383 1ofh_A ATP-dependent HSL prote 55.8 7.5 0.00031 16.8 3.0 21 79-99 52-72 (310)
384 2r62_A Cell division protease 55.8 6 0.00025 17.3 2.5 20 80-99 47-66 (268)
385 1zj6_A ADP-ribosylation factor 55.5 8.5 0.00036 16.4 3.3 21 78-98 17-37 (187)
386 3a00_A Guanylate kinase, GMP k 55.5 8 0.00034 16.6 3.1 20 80-99 4-23 (186)
387 2rhm_A Putative kinase; ZP_007 55.4 7.4 0.00031 16.8 2.9 23 79-101 7-29 (193)
388 3nh6_A ATP-binding cassette SU 55.4 4.2 0.00018 18.3 1.6 20 79-98 82-101 (306)
389 2yz2_A Putative ABC transporte 55.0 6.4 0.00027 17.2 2.5 20 79-98 35-54 (266)
390 1svi_A GTP-binding protein YSX 54.7 8.7 0.00037 16.3 3.3 24 75-98 21-44 (195)
391 2ihy_A ABC transporter, ATP-bi 54.5 7.1 0.0003 16.9 2.7 20 79-98 49-68 (279)
392 2obl_A ESCN; ATPase, hydrolase 54.2 8.9 0.00037 16.3 3.4 38 79-121 73-110 (347)
393 3be4_A Adenylate kinase; malar 54.2 8.6 0.00036 16.4 3.1 24 78-101 6-29 (217)
394 1nn5_A Similar to deoxythymidy 54.2 8.9 0.00037 16.3 5.3 34 80-113 12-45 (215)
395 3cf0_A Transitional endoplasmi 54.1 8.9 0.00038 16.3 5.6 64 47-115 16-82 (301)
396 2vli_A Antibiotic resistance p 54.0 4.8 0.0002 18.0 1.7 20 79-98 7-26 (183)
397 1moz_A ARL1, ADP-ribosylation 54.0 5.8 0.00024 17.4 2.2 20 78-97 19-38 (183)
398 2pez_A Bifunctional 3'-phospho 53.9 8.5 0.00036 16.4 3.0 29 79-107 7-35 (179)
399 2vp4_A Deoxynucleoside kinase; 53.8 5.8 0.00025 17.4 2.2 34 78-116 21-54 (230)
400 1fzq_A ADP-ribosylation factor 53.5 9 0.00038 16.2 3.1 21 77-97 16-36 (181)
401 3a4m_A L-seryl-tRNA(SEC) kinas 53.4 9.2 0.00038 16.2 4.9 29 79-107 6-34 (260)
402 1sxj_A Activator 1 95 kDa subu 53.4 9.2 0.00039 16.2 4.9 34 77-115 77-110 (516)
403 2c95_A Adenylate kinase 1; AP4 53.2 8.4 0.00035 16.4 2.9 30 79-113 11-40 (196)
404 3lv8_A DTMP kinase, thymidylat 52.9 9.3 0.00039 16.2 6.8 44 80-123 30-73 (236)
405 3io5_A Recombination and repai 52.9 9.3 0.00039 16.2 5.6 36 79-114 30-65 (333)
406 1jwy_B Dynamin A GTPase domain 52.6 9.4 0.0004 16.1 5.6 22 77-98 24-45 (315)
407 1ii8_A RAD50 ABC-ATPase; MRE11 52.6 9.4 0.0004 16.1 3.5 19 80-98 26-44 (195)
408 1b0u_A Histidine permease; ABC 52.5 8.6 0.00036 16.4 2.8 20 79-98 34-53 (262)
409 1vpl_A ABC transporter, ATP-bi 52.2 7.5 0.00032 16.7 2.5 19 80-98 44-62 (256)
410 3gd7_A Fusion complex of cysti 52.0 9.6 0.00041 16.1 3.1 21 79-99 49-69 (390)
411 2olj_A Amino acid ABC transpor 51.8 7.7 0.00032 16.7 2.5 20 79-98 52-71 (263)
412 2c9o_A RUVB-like 1; hexameric 51.8 9.7 0.00041 16.0 4.9 43 54-100 41-86 (456)
413 2onk_A Molybdate/tungstate ABC 51.7 9.7 0.00041 16.0 3.0 21 79-99 26-46 (240)
414 1r8s_A ADP-ribosylation factor 51.4 9.9 0.00041 16.0 3.2 20 79-98 2-21 (164)
415 2cxx_A Probable GTP-binding pr 50.8 10 0.00042 16.0 3.0 22 77-98 1-22 (190)
416 1zcb_A G alpha I/13; GTP-bindi 50.5 9.9 0.00042 16.0 2.9 47 50-97 7-53 (362)
417 2pcj_A ABC transporter, lipopr 49.8 9.4 0.00039 16.1 2.7 20 79-98 32-51 (224)
418 1e9r_A Conjugal transfer prote 49.7 11 0.00044 15.8 5.3 38 79-118 55-92 (437)
419 3g5u_A MCG1178, multidrug resi 49.6 9.5 0.0004 16.1 2.7 20 79-98 418-437 (1284)
420 3bgw_A DNAB-like replicative h 49.6 11 0.00044 15.8 5.1 43 80-124 200-244 (444)
421 3kta_A Chromosome segregation 49.2 11 0.00045 15.8 3.1 19 80-98 29-47 (182)
422 1lvg_A Guanylate kinase, GMP k 48.7 11 0.00046 15.7 3.0 22 80-101 7-28 (198)
423 2qor_A Guanylate kinase; phosp 48.4 11 0.00046 15.7 3.2 21 79-99 14-34 (204)
424 3d3q_A TRNA delta(2)-isopenten 47.7 11 0.00047 15.7 3.0 20 80-99 10-29 (340)
425 1f2t_A RAD50 ABC-ATPase; DNA d 47.4 11 0.00048 15.6 3.2 19 80-98 26-44 (149)
426 3exa_A TRNA delta(2)-isopenten 47.0 12 0.00049 15.6 3.0 16 53-68 76-91 (322)
427 2ipc_A Preprotein translocase 47.0 12 0.00049 15.6 4.4 55 79-137 95-149 (997)
428 3fgn_A Dethiobiotin synthetase 46.9 12 0.00049 15.6 3.8 35 79-115 28-63 (251)
429 1lv7_A FTSH; alpha/beta domain 46.7 12 0.00049 15.6 5.1 49 48-99 14-67 (257)
430 2qmh_A HPR kinase/phosphorylas 46.6 11 0.00046 15.7 2.6 19 79-97 36-54 (205)
431 1azs_C GS-alpha; complex (lyas 46.4 12 0.0005 15.5 2.9 45 52-97 16-60 (402)
432 1v43_A Sugar-binding transport 46.3 12 0.0005 15.5 3.0 20 79-98 39-58 (372)
433 1z6g_A Guanylate kinase; struc 46.3 7.2 0.0003 16.9 1.6 31 80-114 26-56 (218)
434 3k1j_A LON protease, ATP-depen 46.2 12 0.0005 15.5 4.5 38 54-99 45-82 (604)
435 1ji0_A ABC transporter; ATP bi 46.2 11 0.00045 15.8 2.5 20 79-98 34-53 (240)
436 3fsl_A Aromatic-amino-acid ami 46.2 12 0.0005 15.5 6.8 72 50-124 67-138 (397)
437 3bk7_A ABC transporter ATP-bin 46.0 12 0.0005 15.5 3.2 20 79-98 119-138 (607)
438 2kjq_A DNAA-related protein; s 45.9 12 0.00051 15.5 3.5 21 80-100 39-59 (149)
439 3cm0_A Adenylate kinase; ATP-b 45.7 12 0.00051 15.5 3.2 23 79-101 6-28 (186)
440 1g6h_A High-affinity branched- 45.6 11 0.00047 15.7 2.5 20 79-98 35-54 (257)
441 3b60_A Lipid A export ATP-bind 45.5 11 0.00047 15.7 2.5 20 79-98 371-390 (582)
442 1ltq_A Polynucleotide kinase; 45.4 12 0.00051 15.4 3.0 17 81-97 6-22 (301)
443 2v54_A DTMP kinase, thymidylat 44.9 12 0.00052 15.4 3.0 35 80-117 7-41 (204)
444 3n70_A Transport activator; si 44.8 13 0.00053 15.4 4.6 26 195-220 80-105 (145)
445 1xwi_A SKD1 protein; VPS4B, AA 44.7 13 0.00053 15.4 6.8 53 46-99 12-67 (322)
446 3eph_A TRNA isopentenyltransfe 44.5 13 0.00053 15.3 2.9 48 6-70 45-92 (409)
447 3h4m_A Proteasome-activating n 44.3 13 0.00054 15.3 5.3 33 79-116 53-85 (285)
448 3b5x_A Lipid A export ATP-bind 44.2 11 0.00048 15.6 2.4 22 79-100 371-392 (582)
449 3b9p_A CG5977-PA, isoform A; A 43.7 13 0.00055 15.3 6.4 53 47-99 22-76 (297)
450 2ehv_A Hypothetical protein PH 43.2 13 0.00056 15.2 5.1 36 79-115 32-67 (251)
451 3fdi_A Uncharacterized protein 43.2 13 0.00056 15.2 2.9 23 79-101 8-30 (201)
452 2r2a_A Uncharacterized protein 42.9 13 0.00056 15.2 3.0 22 80-101 8-29 (199)
453 1ls1_A Signal recognition part 42.9 13 0.00056 15.2 9.1 53 79-135 100-152 (295)
454 2fh5_B SR-beta, signal recogni 42.8 13 0.00057 15.2 3.2 22 77-98 7-28 (214)
455 3crm_A TRNA delta(2)-isopenten 42.3 14 0.00057 15.1 3.0 19 80-98 8-26 (323)
456 2hf9_A Probable hydrogenase ni 42.2 14 0.00058 15.1 5.5 41 77-120 38-78 (226)
457 2pbr_A DTMP kinase, thymidylat 42.2 14 0.00058 15.1 4.9 33 80-114 3-35 (195)
458 2ocp_A DGK, deoxyguanosine kin 42.0 14 0.00058 15.1 2.6 23 79-101 4-26 (241)
459 3foz_A TRNA delta(2)-isopenten 41.9 14 0.00058 15.1 3.0 18 80-97 13-30 (316)
460 2yv5_A YJEQ protein; hydrolase 41.5 14 0.00059 15.1 4.5 18 80-97 168-185 (302)
461 3fvq_A Fe(3+) IONS import ATP- 41.1 14 0.0006 15.0 2.9 20 79-98 32-51 (359)
462 2xtp_A GTPase IMAP family memb 40.8 14 0.00061 15.0 3.2 20 78-97 23-42 (260)
463 2x8a_A Nuclear valosin-contain 40.8 14 0.00061 15.0 4.4 31 79-114 46-76 (274)
464 1htw_A HI0065; nucleotide-bind 40.7 14 0.00061 15.0 3.9 55 56-118 15-69 (158)
465 1z47_A CYSA, putative ABC-tran 40.7 14 0.00061 15.0 3.0 21 79-99 43-63 (355)
466 1kgd_A CASK, peripheral plasma 40.6 15 0.00061 15.0 3.0 20 80-99 8-27 (180)
467 2awn_A Maltose/maltodextrin im 40.6 15 0.00061 15.0 3.0 20 79-98 31-50 (381)
468 1g29_1 MALK, maltose transport 40.6 15 0.00061 15.0 3.0 21 79-99 31-51 (372)
469 2yyz_A Sugar ABC transporter, 40.4 15 0.00062 15.0 3.0 21 79-99 31-51 (359)
470 1wst_A MSAT, multiple substrat 39.9 15 0.00063 14.9 9.4 59 56-123 86-146 (417)
471 1um8_A ATP-dependent CLP prote 39.0 15 0.00065 14.8 4.5 21 79-99 74-94 (376)
472 1q3t_A Cytidylate kinase; nucl 38.9 15 0.00065 14.8 3.3 25 78-102 17-41 (236)
473 3tmk_A Thymidylate kinase; pho 38.7 16 0.00065 14.8 3.4 34 80-117 8-41 (216)
474 3iby_A Ferrous iron transport 38.5 16 0.00066 14.8 3.1 22 77-98 1-22 (256)
475 1g8p_A Magnesium-chelatase 38 38.5 12 0.0005 15.5 1.8 41 193-233 146-199 (350)
476 2j41_A Guanylate kinase; GMP, 38.1 16 0.00067 14.7 3.0 19 80-98 9-27 (207)
477 3iyt_A APAF-1, apoptotic prote 37.9 16 0.00067 14.7 5.4 54 55-112 135-191 (1263)
478 2wsm_A Hydrogenase expression/ 37.8 16 0.00068 14.7 5.0 44 77-123 30-73 (221)
479 1nlf_A Regulatory protein REPA 37.7 16 0.00068 14.7 6.9 45 79-123 32-86 (279)
480 1tf7_A KAIC; homohexamer, hexa 37.4 16 0.00069 14.7 6.0 33 80-113 42-74 (525)
481 2x5d_A Probable aminotransfera 37.3 16 0.00069 14.7 4.7 60 57-123 79-139 (412)
482 2q6t_A DNAB replication FORK h 37.1 16 0.00069 14.6 6.9 44 80-124 203-248 (444)
483 1cke_A CK, MSSA, protein (cyti 36.6 17 0.00071 14.6 3.0 27 79-105 7-33 (227)
484 3fho_A ATP-dependent RNA helic 36.6 17 0.00071 14.6 4.6 46 79-124 160-206 (508)
485 4tmk_A Protein (thymidylate ki 36.4 17 0.00071 14.6 6.8 41 80-120 6-46 (213)
486 2it1_A 362AA long hypothetical 36.4 17 0.00071 14.6 3.0 20 79-98 31-50 (362)
487 2q7w_A Aspartate aminotransfer 36.1 17 0.00072 14.5 5.9 70 50-123 66-136 (396)
488 2z0h_A DTMP kinase, thymidylat 36.1 17 0.00072 14.5 5.2 36 80-117 3-39 (197)
489 1yrb_A ATP(GTP)binding protein 35.9 17 0.00072 14.5 5.2 32 79-113 16-47 (262)
490 2qp9_X Vacuolar protein sortin 35.9 17 0.00073 14.5 6.5 65 45-114 50-116 (355)
491 3lx5_A Ferrous iron uptake tra 35.8 17 0.00073 14.5 3.2 23 76-98 2-24 (272)
492 2ze6_A Isopentenyl transferase 35.6 17 0.00073 14.5 3.4 23 79-101 3-25 (253)
493 2wwf_A Thymidilate kinase, put 35.4 18 0.00074 14.5 5.0 36 80-117 13-49 (212)
494 1s96_A Guanylate kinase, GMP k 35.3 18 0.00074 14.5 3.0 20 80-99 19-38 (219)
495 1p5z_B DCK, deoxycytidine kina 35.3 18 0.00074 14.5 2.7 25 76-100 23-47 (263)
496 1znw_A Guanylate kinase, GMP k 35.0 18 0.00075 14.4 3.0 20 80-99 23-42 (207)
497 2zan_A Vacuolar protein sortin 34.9 18 0.00075 14.4 6.3 53 46-99 134-189 (444)
498 1vkr_A Mannitol-specific PTS s 34.7 18 0.00076 14.4 2.7 27 73-99 9-35 (125)
499 2h92_A Cytidylate kinase; ross 34.5 18 0.00076 14.4 3.0 40 79-126 5-44 (219)
500 3dhw_C Methionine import ATP-b 34.5 18 0.00076 14.4 2.4 19 80-98 34-52 (343)
No 1
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=100.00 E-value=2.8e-38 Score=252.37 Aligned_cols=308 Identities=14% Similarity=0.116 Sum_probs=218.9
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf 54572337899997523201259888855430146-68884436668428999999988887512455555411247761
Q gi|254781187|r 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWG-IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 (367)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~-~~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~ 83 (367)
-.+.++|++||.++ .+|..||.+|+.. |++= .++.-+--| .+.++|+++++.+.++ +|++ |.
T Consensus 122 ~~~~~~t~~~~~e~---~kc~~d~~yF~~~-y~~i~~~~~g~vpf-~l~~~Q~~~l~~~~~~-----------Rf~I-il 184 (592)
T 3cpe_A 122 NIKTQWTREMVEEW---KKCRDDIVYFAET-YCAITHIDYGVIKV-QLRDYQRDMLKIMSSK-----------RMTV-CN 184 (592)
T ss_dssp TCCCCCCHHHHHHH---HHHHTCHHHHHHH-TCBCCBTTTBSBBC-CCCHHHHHHHHHHHHC-----------SEEE-EE
T ss_pred CCCCCCCHHHHHHH---HHHHCCHHHHHHH-EEEEECCCCCEEEC-CCCHHHHHHHHHHHHC-----------CEEE-EE
T ss_conf 98667789999999---9874088999862-18998788984427-6769999999998743-----------7689-99
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 48867889999999999997089977999715379999999999999998623121123333210001233322111134
Q gi|254781187|r 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 (367)
Q Consensus 84 sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (367)
+|||+|||+++|++++|+++++|+.+++++|++++|++.++ ..++..++.+|.. +.+.....+...+.
T Consensus 185 k~RQ~GKSt~~a~~~l~~al~~~~~~i~ivA~~~~~A~~i~-~~ik~~~~~lP~~-----------l~~~~~~~n~~~i~ 252 (592)
T 3cpe_A 185 LSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DRTKQAIELLPDF-----------LQPGIVEWNKGSIE 252 (592)
T ss_dssp ECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHH-HHHHHHHTTSCTT-----------TSCCEEEECSSEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHHHHHCCHH-----------HCCCCCCCCCCEEE
T ss_conf 46988699999999999998299975999919899999999-9999999968133-----------04664346641267
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCH--HHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 577612662101354455652101135862899975455998--899998987406988258999807899987688754
Q gi|254781187|r 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 (367)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d--~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~Fye~~ 241 (367)
..+|+.+... +.+..++||.+..++++|||++|++ ++|.++.++++.+.... ++++| |+.+.|.||+.|
T Consensus 253 ~~Ngs~i~~~-------a~~~da~RG~s~~~l~lDE~Afi~~~~e~~~~~~~~l~~g~~~k-iii~S-TpnG~n~fy~~~ 323 (592)
T 3cpe_A 253 LDNGSSIGAY-------ASSPDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSK-IIITT-TPNGLNHFYDIW 323 (592)
T ss_dssp ETTSCEEEEE-------ECCHHHHHHSCCSEEEEETGGGCTTHHHHHHHHHHHHSSSSCCE-EEEEE-CCCTTSHHHHHH
T ss_pred ECCCCEEEEE-------CCCCCCCCCCCCCCEEEEHHHHCCHHHHHHHHHCCCCCCCCCCE-EEEEC-CCCCCCCCHHHH
T ss_conf 4587258750-------47886666776663275313204068888753023343688736-99977-998876327899
Q ss_pred HCC---CCCEEEEEECCCCCCCC--------CHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEECHHHHHHHHCCCC
Q ss_conf 112---23504675233328888--------9889999996216880002688864432778980782999864431577
Q gi|254781187|r 242 NIP---LEDWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 (367)
Q Consensus 242 ~~~---~~~w~~~~~~~~d~p~~--------~~~~i~~~~~~~gedS~~~r~ev~G~Fp~~~~d~~ip~~~ie~a~~~~~ 310 (367)
..+ .+.+..+.+.|.+.|.. +..|.....+..+.....|+++++|+|.. +.+.+|+...+..+.....
T Consensus 324 ~~a~~g~~~~~~~~~~w~~~per~~~d~~~~~~~~~w~~e~i~~~s~~~F~QEy~~eF~~-s~~~vf~~~~l~~~~~~~~ 402 (592)
T 3cpe_A 324 TAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEG-TSGTLISGMKLAVMDFIEV 402 (592)
T ss_dssp HHHHTTCSSCEEEEECGGGSGGGGBCTTSBBCTTHHHHHHHHTTSCHHHHHHHHSCCCTT-SCSBSSCHHHHTTCCCCCC
T ss_pred HHHHHCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCC-CCCHHHHHHHHHHHCCCCC
T ss_conf 887407776674123434577633554210004379999987457755530143433234-5430567789876202222
Q ss_pred -----------CCCCCCCEEEEEECCC-CCCCEEEEEEEC--CCEEEEEHHHCHH
Q ss_conf -----------7788984899996387-788108999970--8836870420302
Q gi|254781187|r 311 -----------IDDLYAPLIMGCDIAG-EGGDKTVVVFRR--GNIIEHIFDWSAK 351 (367)
Q Consensus 311 -----------~~~~~~p~viGvDvAr-~G~D~Tvi~~r~--G~~v~~i~~~~~~ 351 (367)
.|.+...+++|+|||+ .|+|+||+.+.. +...++|.+|+..
T Consensus 403 ~~~~~~~~iye~p~~~~~YvigvDvA~G~~~DySai~Vidv~~~~~eqVa~~~~n 457 (592)
T 3cpe_A 403 TPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSN 457 (592)
T ss_dssp CCCSSSEEESSCCCTTCCEEEEEECCSSBTTBCEEEEEEECSSSSEEEEEEEEES
T ss_pred CCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECC
T ss_conf 0347781332446766602688512445777732799941478761899998358
No 2
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=99.98 E-value=9.9e-31 Score=206.04 Aligned_cols=244 Identities=13% Similarity=0.106 Sum_probs=174.1
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCC---CC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 545723378999975232012598888554301466---88-84436668428999999988887512455555411247
Q gi|254781187|r 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGI---KG-KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC 80 (367)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~---~~-~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (367)
-...++|++||.++ .+|..||.+|+.. |.+=+ +| .|+ .|.++|.++++.+.+ .+|++
T Consensus 122 ~~~~~~t~e~~~e~---~kc~~dp~yF~~~-y~~i~~~~~G~ipF----~Lyp~Qkell~~~~~-----------~Rf~I 182 (385)
T 2o0j_A 122 NIKTQWTREMVEEW---KKCRDDIVYFAET-YCAITHIDYGVIKV----QLRDYQRDMLKIMSS-----------KRMTV 182 (385)
T ss_dssp TCCCCCCHHHHHHH---HHHHHCHHHHHHH-HCEEECSSSCEEEC----CCCHHHHHHHHHHHH-----------SSEEE
T ss_pred CCCCCCCHHHHHHH---HHHHCCHHHHHHH-EEEEECCCCCEEEC----CCCHHHHHHHHHHHH-----------CCEEE
T ss_conf 98667799999999---9984198999862-37998888985527----776999999999975-----------04789
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76148867889999999999997089977999715379999999999999998623121123333210001233322111
Q gi|254781187|r 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 (367)
Q Consensus 81 ~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
|.+|||+|||++++++++|+++++++.+++++|++.+|++.+ +..++.+++.+|... .......+..
T Consensus 183 -vlKsRQ~GKTT~~a~~~L~~Alf~~~~~i~IiA~k~~~A~~i-~~~ik~~~e~lP~~~-----------~~~~~~~~~~ 249 (385)
T 2o0j_A 183 -CNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEV-LDRTKQAIELLPDFL-----------QPGIVEWNKG 249 (385)
T ss_dssp -EEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHH-HHHHHHHHHHSCTTT-----------SCCEEEECSS
T ss_pred -EEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHH-HHHHHHHHHHCHHHH-----------HHCCCHHHHH
T ss_conf -996266872087999999999726677148861537889999-999999986561655-----------3023102223
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCH--HHHHH-HHHHHHCCCCCEEEEEEECCCCCCCHH
Q ss_conf 134577612662101354455652101135862899975455998--89999-898740698825899980789998768
Q gi|254781187|r 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKS-ILGFFTELNPNRFWIMTSNTRRLNGWF 237 (367)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d--~i~e~-i~g~Lt~~~~~~~~i~igNP~r~~g~F 237 (367)
.+...+++.++.+. .+..+.+|....++++||++++++ .+|.+ +.+++++.+++ ++++|||.+ .|+|
T Consensus 250 ~~~~~ngs~i~~~a-------~s~da~RG~~~~~lilDE~Afi~~~~e~~~~~~~~~~s~~~Gk--iIiiSTPNG-~N~F 319 (385)
T 2o0j_A 250 SIELDNGSSIGAYA-------SSPDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNG-LNHF 319 (385)
T ss_dssp EEEETTSCEEEEEE-------CSHHHHHTSCCSEEEEESGGGSTTHHHHHHHHHHHHHSTTCCE--EEEEECCCS-SSHH
T ss_pred HCCCCCCCCEEECC-------CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCE--EEEEECCCC-CCHH
T ss_conf 12357863101023-------4556545420254203265410026888875313422489803--999989998-7049
Q ss_pred HHHHHCC---CCCEEEEEECCCCCCCC----------CHHHHHHHHHHCCCCCCEEEEEEEEEECCCC
Q ss_conf 8754112---23504675233328888----------9889999996216880002688864432778
Q gi|254781187|r 238 YDIFNIP---LEDWKRYQIDTRTVEGI----------DSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 (367)
Q Consensus 238 ye~~~~~---~~~w~~~~~~~~d~p~~----------~~~~i~~~~~~~gedS~~~r~ev~G~Fp~~~ 292 (367)
|++|.++ .+.|..+.++|++.|.. +.+|.++.++.+ ++..|+||++|+|..++
T Consensus 320 Ydl~~~A~~g~n~f~~~~~~W~~~p~r~~~~~~~~dee~~~~~~~~~~~--s~~~F~QEYeceFlgSs 385 (385)
T 2o0j_A 320 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGS--SLAQFRQEHTAAFEGTS 385 (385)
T ss_dssp HHHHHHHHTTCSSCEEEEECGGGSGGGGBCTTSBBCTTHHHHHHHHHTS--CHHHHHHHHSCCCSSCC
T ss_pred HHHHHHHHHCCCCCEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHCC--CHHHHHHHHCCEECCCC
T ss_conf 9999998708888637861401055520468889807999999987559--99999998498607879
No 3
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.83 E-value=3.8e-07 Score=61.46 Aligned_cols=158 Identities=11% Similarity=0.037 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.||.+|.+++..+-.+- |..+.++.|+|||.+++.++.++. ...+.++++++|+..-+.+ +..++.
T Consensus 113 ~lrdyQ~eav~~~l~~~------------~~il~~pTGsGKT~i~~~i~~~~~-~~~~~k~Liivp~~~Lv~Q-~~~~~~ 178 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNR------------RRILNLPTSAGRSLIQALLARYYL-ENYEGKILIIVPTTALTTQ-MADDFV 178 (282)
T ss_dssp CCCHHHHHHHHHHHHHS------------EEEECCCTTSCHHHHHHHHHHHHH-HHCSSEEEEECSSHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHCC------------CEEEECCCCCCHHHHHHHHHHHHH-CCCCCCEEEEECCHHHHHH-HHHHHH
T ss_conf 87199999999999749------------829985788977899999999743-1367508999797899999-999888
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 99986231211233332100012333221111345776126621013544556521011358628999754559988999
Q gi|254781187|r 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 (367)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e 209 (367)
++....... ...+ +...........+....+.+.++......+- .+++.++|+|||..++...+.
T Consensus 179 ~~~~~~~~~------~~~i----~~g~~~~~~~~~~~~i~i~t~qsl~~~~~~~-----~~~f~~VIiDEaH~~~a~~~~ 243 (282)
T 1rif_A 179 DYRLFSHAM------IKKI----GGGASKDDKYKNDAPVVVGTWQTVVKQPKEW-----FSQFGMMMNDECHLATGKSIS 243 (282)
T ss_dssp HHTSCCGGG------EEEC----STTCSSTTCCCTTCSEEEECHHHHTTSCGGG-----GGGEEEEEEETGGGCCHHHHH
T ss_pred HHCCCCCCC------CEEE----ECCCCCCCCCCCCCEEEEEEEHHHHHCCHHH-----CCCCCEEEEECCCCCCCHHHH
T ss_conf 753675335------3033----0454465533434369998505533212211-----478899999289677833099
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 98987406988258999807899987688
Q gi|254781187|r 210 SILGFFTELNPNRFWIMTSNTRRLNGWFY 238 (367)
Q Consensus 210 ~i~g~Lt~~~~~~~~i~igNP~r~~g~Fy 238 (367)
.+...+. +.+..+-+++||++......
T Consensus 244 ~i~~~~~--~~~~rlGlTaT~~~~~~~~~ 270 (282)
T 1rif_A 244 SIISGLN--NCMFKFGLSGSLRDGKANIM 270 (282)
T ss_dssp HHTTTCT--TCCEEEEECSSCCTTSTTHH
T ss_pred HHHHHCC--CCCEEEEEEEECCCCCCCEE
T ss_conf 9998540--87968999852699874327
No 4
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.82 E-value=4.9e-07 Score=60.78 Aligned_cols=170 Identities=14% Similarity=0.106 Sum_probs=87.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC-------CCCEEEEECCCHHH
Q ss_conf 66684289999999888875124555554112477614886788999999999999708-------99779997153799
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-------PGMSIICIANSETQ 119 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~-------~~~~v~~~A~t~~Q 119 (367)
....||.+|.++++++.++..++.. |..|....|+|||.++..++..++..+ ...++++++++..-
T Consensus 175 ~~~~~R~yQ~~Ai~~~~~~~~~~~~-------r~li~~aTGSGKT~~a~~li~~ll~~~~~~~~~~~~~rvl~l~dr~~L 247 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSVLQGKK-------RSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVL 247 (590)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCS-------EEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC----
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCC-------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHH
T ss_conf 7998679999999999999983799-------659988999978999999999999841132234568869999536999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC--CCCCCCCCCCCCCCCEEEE
Q ss_conf 99999999999998623121123333210001233322111134577612662101354--4556521011358628999
Q gi|254781187|r 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE--ERPDTFVGPHNTHGMAVFN 197 (367)
Q Consensus 120 ~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~ea~~g~h~~~~~l~iv 197 (367)
+.+.. ..+. ...+.. ................+..-++... ..+....-+-.....++|+
T Consensus 248 ~~Q~~-~~~~---~~~~~~---------------~~~i~~~~~~~~~~~~~~t~q~l~~~~~~~~~~~~~~~~~~~lIIi 308 (590)
T 3h1t_A 248 VDDPK-DKTF---TPFGDA---------------RHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIII 308 (590)
T ss_dssp --------CC---TTTCSS---------------EEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEE
T ss_pred HHHHH-HHHH---HHCCCC---------------CEEEECCCCCCCCCEEEEEEEEEHHHHHCHHHHHHCCCCCCEEEEE
T ss_conf 99899-9997---413665---------------4022114423566315776667202220113565427555169996
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCH-HHHHHH
Q ss_conf 754559988999989874069882589998078999876-887541
Q gi|254781187|r 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW-FYDIFN 242 (367)
Q Consensus 198 DEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~-Fye~~~ 242 (367)
|||......-.......+....+.....++++|.+..+. .++.|.
T Consensus 309 DEaHr~~~~~~~~~~~il~~~~~a~~lGlTATP~~~~~~~~~~~f~ 354 (590)
T 3h1t_A 309 DECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG 354 (590)
T ss_dssp SCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC
T ss_pred EHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEHHCC
T ss_conf 0477403232115778887643445132244652236742201025
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19
Probab=98.59 E-value=3.6e-07 Score=61.63 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 66684289999999888875124555554112477614886788999999999999708997799971537999999999
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ 126 (367)
++-.|++||.+++.... ++ .+.|+++.|+|||.++...+. ..+...+.++++++|+..-+.+. ..
T Consensus 6 ~~~~pr~yQ~~~~~~~~---~~----------n~ll~~pTG~GKT~~a~~~~~-~~~~~~~~~vlil~Pt~~L~~Q~-~~ 70 (494)
T 1wp9_A 6 DLIQPRIYQEVIYAKCK---ET----------NCLIVLPTGLGKTLIAMMIAE-YRLTKYGGKVLMLAPTKPLVLQH-AE 70 (494)
T ss_dssp HHHCCCHHHHHHHHHGG---GS----------CEEEECCTTSCHHHHHHHHHH-HHHHHSCSCEEEECSSHHHHHHH-HH
T ss_pred CCCCCCHHHHHHHHHHH---CC----------CEEEEECCCCHHHHHHHHHHH-HHHHHCCCCEEEEECCHHHHHHH-HH
T ss_conf 88899999999999995---79----------959997997729999999999-99985699199994849999999-99
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254781187|r 127 EVSKWLS 133 (367)
Q Consensus 127 ei~k~~~ 133 (367)
+++++..
T Consensus 71 ~~~~~~~ 77 (494)
T 1wp9_A 71 SFRRLFN 77 (494)
T ss_dssp HHHHHBC
T ss_pred HHHHHHC
T ss_conf 9999746
No 6
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding protein; HET: DNA; 2.40A {Archaeoglobus fulgidus dsm 4304} SCOP: c.37.1.19
Probab=98.58 E-value=1e-06 Score=58.83 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.|++||.+++..+..+ .+..|.++-|+|||.++..++. .-+.++++++|+..-+.+ +..+++
T Consensus 93 ~Lr~yQ~eai~~~~~~------------~~gll~~pTGsGKT~ial~~i~-----~~~~~~LvvvP~~~L~~Q-w~~~~~ 154 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD------------KRGCIVLPTGSGKTHVAMAAIN-----ELSTPTLIVVPTLALAEQ-WKERLG 154 (237)
T ss_dssp CCCHHHHHHHHHHTTT------------SEEEEEESSSTTHHHHHHHHHH-----HSCSCEEEEESSHHHHHH-HHHHHG
T ss_pred CCCHHHHHHHHHHHHC------------CCCEEEECCCCCHHHHHHHHHH-----HHCCCEEEEECCHHHHHH-HHHHHH
T ss_conf 8599999999999968------------9969993899988899999999-----848988999774788778-999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 99986231211233332100012333221111345776126621013544556521011358628999754559988999
Q gi|254781187|r 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 (367)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e 209 (367)
++..... .. +.. ..+ +.....+.....-..+++.+ ...+.++|+|||..++...+.
T Consensus 155 ~~~~~~~----------~~----~~g-----~~~-~~~~i~i~t~~s~~~~~~~~----~~~f~lvIiDEaH~l~~~~~~ 210 (237)
T 2fz4_A 155 IFGEEYV----------GE----FSG-----RIK-ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYV 210 (237)
T ss_dssp GGCGGGE----------EE----ESS-----SCB-CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHH
T ss_pred HHCCCCC----------EE----ECC-----CCC-CCCCCCCCHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHH
T ss_conf 7360123----------13----425-----534-45421011489998618862----786658999797306877999
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCH
Q ss_conf 989874069882589998078999876
Q gi|254781187|r 210 SILGFFTELNPNRFWIMTSNTRRLNGW 236 (367)
Q Consensus 210 ~i~g~Lt~~~~~~~~i~igNP~r~~g~ 236 (367)
.+.-.+ ..+..+.+++||.|..|.
T Consensus 211 ~i~~~~---~~~~rLgLTATP~R~Dg~ 234 (237)
T 2fz4_A 211 QIAQMS---IAPFRLGLTATFEREDGR 234 (237)
T ss_dssp HHHHTC---CCSEEEEEEESCC-----
T ss_pred HHHHCC---CCCEEEEEECCCCCCCCC
T ss_conf 998617---888299992288678988
No 7
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.54 E-value=1.5e-05 Score=51.76 Aligned_cols=158 Identities=12% Similarity=0.056 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.||.+|.+++..+-.+- +..+.++.|+|||.+++.++.++.. ..+.++++++|+..-+.+. ..++.
T Consensus 113 ~~r~yQ~~ai~~~l~~~------------~~li~~pTGsGKTli~~~l~~~~~~-~~~~k~LiivP~~~Lv~Q~-~~~~~ 178 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNR------------RRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQM-ADDFV 178 (510)
T ss_dssp CCCHHHHHHHHHHHHHS------------EEEEECCSTTTHHHHHHHHHHHHHH-HCSSEEEEEESSHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHCC------------CEEEEECCCCHHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHH-HHHHH
T ss_conf 77799999999999779------------8699979980799999999999875-5798599997949999999-99998
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 99986231211233332100012333221111345776126621013544556521011358628999754559988999
Q gi|254781187|r 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 (367)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e 209 (367)
+..... .. ....+.. ...............+.+-++... .+ .-+. .+..++|+|||.......+.
T Consensus 179 ~~~~~~---~~---~v~~i~~----~~~~~~~~~~~~~i~i~t~qs~~~-~~---~~~~-~~~~~vIiDE~H~~~~~~~~ 243 (510)
T 2oca_A 179 DYRLFS---HA---MIKKIGG----GASKDDKYKNDAPVVVGTWQTVVK-QP---KEWF-SQFGMMMNDECHLATGKSIS 243 (510)
T ss_dssp HTTSSC---GG---GEEECGG----GCCTTGGGCTTCSEEEEEHHHHTT-SC---GGGG-GGEEEEEEETGGGCCHHHHH
T ss_pred HHCCCC---CC---CEEEECC----CCCCCCCCCCCCCEEEEECHHHHH-HH---HHHH-CCCCEEEEEHHHHHHHHHHH
T ss_conf 755676---54---3134226----533442025676099984323333-26---7651-35787997423320123588
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 98987406988258999807899987688
Q gi|254781187|r 210 SILGFFTELNPNRFWIMTSNTRRLNGWFY 238 (367)
Q Consensus 210 ~i~g~Lt~~~~~~~~i~igNP~r~~g~Fy 238 (367)
.+...+.. ....+.+++++.+......
T Consensus 244 ~il~~~~~--~~~~l~~T~t~~~~~~~~~ 270 (510)
T 2oca_A 244 SIISGLNN--CMFKFGLSGSLRDGKANIM 270 (510)
T ss_dssp HHGGGCTT--CCEEEEEESCGGGCSSCHH
T ss_pred HHHHHHCC--CCHHEEEEECCCCCCCEEE
T ss_conf 99887511--0001144311358753023
No 8
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.38 E-value=5.5e-06 Score=54.37 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.|++||.+++..|-.+. .+.|+|..|+|||.++...++- ++. .+.++++++|+..=+.+. +.+++
T Consensus 86 ~l~~~Q~~ai~~l~~g~------------~vlv~apTGSGKT~va~~~i~~-~l~-~~~rvl~l~Pt~~L~~Q~-~~~~~ 150 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGE------------SVLVSAHTSAGKTVVAEYAIAQ-SLK-NKQRVIYTSPIKALSNQK-YRELL 150 (1010)
T ss_dssp CCCHHHHHHHHHHHHTC------------EEEEECCTTSCHHHHHHHHHHH-HHH-TTCEEEEEESSHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHCCC------------CEEEEECCCCHHHHHHHHHHHH-HHH-CCCCEEEECCHHHHHHHH-HHHHH
T ss_conf 98999999999998399------------9999908986599999999999-996-099599998969999999-99999
Q ss_pred HHH
Q ss_conf 999
Q gi|254781187|r 130 KWL 132 (367)
Q Consensus 130 k~~ 132 (367)
+..
T Consensus 151 ~~~ 153 (1010)
T 2xgj_A 151 AEF 153 (1010)
T ss_dssp HHH
T ss_pred HHC
T ss_conf 755
No 9
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.32 E-value=9.1e-06 Score=53.01 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 66684289999999888875124555554112477614886788999999999999708997799971537999999999
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ 126 (367)
...+..+.|.++++.+..+ . -+.|.+|=|+|||+++..++-.+-. .+.+|+++|||..-++.. .
T Consensus 186 ~~~~l~~~Q~~Av~~~~~~-----------~-~~~i~G~aGTGKTt~l~~i~~~~~~--~~~~v~~~ApTgkAA~~L--~ 249 (574)
T 3e1s_A 186 ARKGLSEEQASVLDQLAGH-----------R-LVVLTGGPGTGKSTTTKAVADLAES--LGLEVGLCAPTGKAARRL--G 249 (574)
T ss_dssp TTTTCCHHHHHHHHHHTTC-----------S-EEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHH--H
T ss_pred HHCCCCHHHHHHHHHHHCC-----------C-EEEEECCCCCHHHHHHHHHHHHHHH--CCCEEEEECCHHHHHHHH--H
T ss_conf 4267789999999997059-----------8-8999899860099999999999986--798499878729999999--8
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99999986231211233332100012333221111345776126621013544556521011358628999754559988
Q gi|254781187|r 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 (367)
Q Consensus 127 ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~ 206 (367)
+... ..+..+... ++.... .+ .....++ ....++|+||||.|+..
T Consensus 250 e~~~------------~~a~Tih~~----------L~~~~~-~~----~~~~~~~--------~~~dvlIIDEaSMv~~~ 294 (574)
T 3e1s_A 250 EVTG------------RTASTVHRL----------LGYGPQ-GF----RHNHLEP--------APYDLLIVDEVSMMGDA 294 (574)
T ss_dssp HHHT------------SCEEEHHHH----------TTEETT-EE----SCSSSSC--------CSCSEEEECCGGGCCHH
T ss_pred HHHC------------CCHHHHHHH----------HCCCCC-CC----CCCCCCC--------CCCCEEEEECCCCCHHH
T ss_conf 7428------------773889998----------605976-32----1011576--------65868999266622399
Q ss_pred HHHHHHHHHHCCCCCEEEEEEECCC-----CCCCHHHHHHH
Q ss_conf 9999898740698825899980789-----99876887541
Q gi|254781187|r 207 INKSILGFFTELNPNRFWIMTSNTR-----RLNGWFYDIFN 242 (367)
Q Consensus 207 i~e~i~g~Lt~~~~~~~~i~igNP~-----r~~g~Fye~~~ 242 (367)
.+..+.-++.. +.++ +++|-|. ..++.|.+...
T Consensus 295 ~~~~Ll~a~~~-g~rl--IlvGD~~QLppV~~G~~~~~l~~ 332 (574)
T 3e1s_A 295 LMLSLLAAVPP-GARV--LLVGDTDQLPPVDAGLPLLALAQ 332 (574)
T ss_dssp HHHHHHTTSCT-TCEE--EEEECTTSCCCSSSCCHHHHHHH
T ss_pred HHHHHHHHCCC-CCEE--EEECCHHHCCCCCCCCHHHHHHH
T ss_conf 99999864536-8879--85068675477556847898851
No 10
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural genomics consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.30 E-value=3.9e-06 Score=55.29 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=55.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHH
Q ss_conf 366684289999999888875124555554112477614886788999999999999708--997799971537999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNT 123 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~--~~~~v~~~A~t~~Q~~~~ 123 (367)
.+|..|++.|.+++..+-.+. .+.|.|+.|+|||......++-..... .+.++++++||..-+.++
T Consensus 47 ~g~~~ptpiQ~~ai~~il~g~------------dviv~apTGsGKT~~~~~~il~~~~~~~~~~~~~lil~Ptr~La~q~ 114 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVMLHGR------------ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQI 114 (245)
T ss_dssp TTCCSCCHHHHHHHHHHHTTC------------CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf 799999999999999997799------------88998799997758998898875542037884699858808986432
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254781187|r 124 LWAEVSKWLS 133 (367)
Q Consensus 124 lw~ei~k~~~ 133 (367)
. .++.++..
T Consensus 115 ~-~~~~~~~~ 123 (245)
T 3dkp_A 115 H-RELIKISE 123 (245)
T ss_dssp H-HHHHHHTT
T ss_pred H-HHHEECCC
T ss_conf 0-12000122
No 11
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=98.29 E-value=3.1e-06 Score=55.84 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.++.=|.+++..+..+..+ -+.|.|.||=|||.+.+.++.- -..+|+||||+...+... |.-..
T Consensus 175 ~~t~~Q~~~l~~l~~~~~~----------~~vitAdRGRGKSaalGla~a~-----~~~~i~VTAP~~~~v~~l-f~~a~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPG----------VAAVTAARGRGKSALAGQLISR-----IAGRAIVTAPAKASTDVL-AQFAG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSE----------EEEEEECTTSSHHHHHHHHHHH-----SSSCEEEECSSCCSCHHH-HHHHG
T ss_pred CCCHHHHHHHHHHHHCCCC----------CEEEECCCCCCHHHHHHHHHHH-----HCCCEEEECCCHHHHHHH-HHHCC
T ss_conf 8859999999999843677----------3587679998599999999995-----269789989998999999-99705
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 99986231211233332100012333221111345776126621013544556521011358628999754559988999
Q gi|254781187|r 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 (367)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e 209 (367)
+. .. |+ .|+.+-.. .....+++|||||.||-.+-.
T Consensus 239 ~~---------------~~---------------------f~--------aPd~ll~~-~~~~dlLiVDEAAaIP~p~L~ 273 (671)
T 2zpa_A 239 EK---------------FR---------------------FI--------APDALLAS-DEQADWLVVDEAAAIPAPLLH 273 (671)
T ss_dssp GG---------------CC---------------------BC--------CHHHHHHS-CCCCSEEEEETGGGSCHHHHH
T ss_pred CC---------------EE---------------------EE--------CCHHHHCC-CCCCCEEEEECHHCCCHHHHH
T ss_conf 87---------------29---------------------98--------81587536-787788999624129899999
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCHHH-HHHHCCCCCEEEEEECCCCCCC--CCHHHHHHHHHH
Q ss_conf 98987406988258999807899987688-7541122350467523332888--898899999962
Q gi|254781187|r 210 SILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTVEG--IDSGFHEGIISR 272 (367)
Q Consensus 210 ~i~g~Lt~~~~~~~~i~igNP~r~~g~Fy-e~~~~~~~~w~~~~~~~~d~p~--~~~~~i~~~~~~ 272 (367)
.+. ....++++..+-+=..++|.=+ --|.+.-..|..++.+ .|. -..+.+|.+..+
T Consensus 274 ~l~----~~~~rvvfsTTihGYEGtGRgF~lkf~~~L~~~~~~~L~---~PIRwa~~DPlE~wl~~ 332 (671)
T 2zpa_A 274 QLV----SRFPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFELQ---QPIRWAQGCPLEKMVSE 332 (671)
T ss_dssp HHH----TTSSEEEEEEEBSSTTBBCHHHHHHHHHTSTTCEEEECC---SCSSSCTTCHHHHHHHH
T ss_pred HHH----HHCCEEEEEEECCCCCCCCHHHHHHHHHHCHHHEEEECC---CCCCCCCCCCHHHHHHH
T ss_conf 997----447858999514751154699999998747010798666---86317998978999988
No 12
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.3e-05 Score=52.15 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.|++||.+++..|-. +. .+.|+|..|+|||.++...++-.+. .+.++++++||..=+.++ +.+++
T Consensus 184 ~l~~~Q~~ai~~i~~----g~--------dvlv~ApTGSGKTlv~~l~i~~~l~--~~~r~l~l~Ptr~La~Q~-~~~l~ 248 (1108)
T 3l9o_A 184 TLDPFQDTAISCIDR----GE--------SVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQK-YRELL 248 (1108)
T ss_dssp CCCHHHHHHHHHHTT----TC--------CEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHH----CC--------CEEEECCCCCHHHHHHHHHHHHHHH--HCCEEEEECCHHHHHHHH-HHHHH
T ss_conf 989999999999981----99--------9999808986599999999999996--199099988979999999-99999
Q ss_pred HHH
Q ss_conf 999
Q gi|254781187|r 130 KWL 132 (367)
Q Consensus 130 k~~ 132 (367)
+..
T Consensus 249 ~~~ 251 (1108)
T 3l9o_A 249 AEF 251 (1108)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 745
No 13
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, structural genomics, PSI-2; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.25 E-value=5.6e-06 Score=54.28 Aligned_cols=142 Identities=18% Similarity=0.150 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 28999999988887512455555411247761488678899999999999970899779997153799999999999999
Q gi|254781187|r 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 (367)
Q Consensus 52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~ 131 (367)
++-|.++++.+-++. -+.+.++=|+|||+++...++-.+......+++++.|+-...++
T Consensus 9 t~~Q~~~~~al~~~~------------iv~~~G~AGTGKT~la~~~al~~l~~~~~~kiii~rp~v~~~~~--------- 67 (208)
T 3b85_A 9 TLGQKHYVDAIDTNT------------IVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEK--------- 67 (208)
T ss_dssp SHHHHHHHHHHHHCS------------EEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCC---------
T ss_pred CHHHHHHHHHHCCCC------------EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC---------
T ss_conf 988999999863598------------18998799973999999999998522661457872065025521---------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 98623121123333210001233322111134----------57761266210135445565210113586289997545
Q gi|254781187|r 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG----------IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 (367)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAs 201 (367)
+..+| .....++.+|.......-.. ...+...+. ..+-++|-.-++ .++|+|||+
T Consensus 68 ~GfLp-------G~~~eK~~p~~~~~~d~l~~~~~~~~~~~l~~~~~i~~~-------~l~~iRGrt~~n-~~vIvDEaQ 132 (208)
T 3b85_A 68 LGFLP-------GTLNEKIDPYLRPLHDALRDMVEPEVIPKLMEAGIVEVA-------PLAYMRGRTLND-AFVILDEAQ 132 (208)
T ss_dssp CCSSC-------C------CTTTHHHHHHHTTTSCTTHHHHHHHTTSEEEE-------EGGGGTTCCBCS-EEEEECSGG
T ss_pred HHHCC-------CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCEEEEE-------EHHHCCCCCHHC-CEEEECHHH
T ss_conf 11114-------767899999999999888873078899987635838996-------413206977200-677731564
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEEECCCC
Q ss_conf 5998899998987406988258999807899
Q gi|254781187|r 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 (367)
Q Consensus 202 gI~d~i~e~i~g~Lt~~~~~~~~i~igNP~r 232 (367)
.++..-...+. |.-+....++++|.|..
T Consensus 133 N~t~~~~~~il---TRig~~sKli~~GD~~Q 160 (208)
T 3b85_A 133 NTTPAQMKMFL---TRLGFGSKMVVTGDITQ 160 (208)
T ss_dssp GCCHHHHHHHH---TTBCTTCEEEEEEC---
T ss_pred CCCHHHHHHHH---HHCCCCCEEEEECCHHH
T ss_conf 69999999999---87178856999278776
No 14
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.22 E-value=2.7e-05 Score=50.13 Aligned_cols=169 Identities=13% Similarity=0.128 Sum_probs=88.5
Q ss_pred CCCCCCCC----CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 88443666----84289999999888875124555554112477614886788999999999999708997799971537
Q gi|254781187|r 42 GKPLEHFS----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 (367)
Q Consensus 42 ~~~~~~~~----~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~ 117 (367)
..|+.+.. .|.+.|.+.++.+.. + + ..|+.++--=|.|||..+..++..++...+..++++++|+.
T Consensus 141 ~~~~~~l~~~~~~l~phQ~~~~~~~l~---~----~---~~r~LLADevGlGKTiea~~il~~l~~~g~~~r~LIvvP~s 210 (968)
T 3dmq_A 141 RMPYSGLRGQRTSLIPHQLNIAHDVGR---R----H---APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPET 210 (968)
T ss_dssp TCSSCSSSCCSSCCCHHHHHHHHHHHH---S----S---SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH---C----C---CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHH
T ss_conf 588644345888877589999999984---7----8---99999887898119999999999999838999499998878
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99999999999999986231211233332100012333221111345776126621013544556521011358628999
Q gi|254781187|r 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 (367)
Q Consensus 118 ~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~iv 197 (367)
+..-.-.|+.++....... .... .... ...............+.....-..+.....-+......++|+
T Consensus 211 --L~~QW~~El~~~f~~~~~~--~~~~---~~~~----~~~~~~~~~~~~~~vi~s~~~l~~~~~~~~~l~~~~~dlvIv 279 (968)
T 3dmq_A 211 --LQHQWLVEMLRRFNLRFAL--FDDE---RYAE----AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVV 279 (968)
T ss_dssp --THHHHHHHHHHHSCCCCEE--CCHH---HHHH----HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEE
T ss_pred --HHHHHHHHHHHHCCCCEEE--EECC---CHHH----HHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHCCCCCEEEE
T ss_conf --8999999999973998699--8246---4266----767654231059999972899840899998873579888998
Q ss_pred ECCCCCCH------HHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 75455998------8999989874069882589998078999
Q gi|254781187|r 198 DEASGTPD------IINKSILGFFTELNPNRFWIMTSNTRRL 233 (367)
Q Consensus 198 DEAsgI~d------~i~e~i~g~Lt~~~~~~~~i~igNP~r~ 233 (367)
|||..+.+ ..+..+.. ++..... .+++++||-.+
T Consensus 280 DEAH~l~n~~~~~s~~~~~~~~-l~~~~~~-~llLTaTP~~n 319 (968)
T 3dmq_A 280 DEAHHLVWSEDAPSREYQAIEQ-LAEHVPG-VLLLTATPEQL 319 (968)
T ss_dssp CCSSCCCCBTTBCCHHHHHHHH-HHTTCSS-EEESCSSCSSS
T ss_pred ECHHHHCCCCCHHHHHHHHHHH-HHHCCCE-EEEEECCCCCC
T ss_conf 3666531666488899999998-7530462-89841425778
No 15
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.22 E-value=2.6e-06 Score=56.36 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 66684289999999888875124555554112477614886788999999999999708997799971537999999
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~ 123 (367)
++..|++||.+++..+ +.++. .+.|.|+.|+|||.++...++-.+. ..+.++++++|+..=+.++
T Consensus 27 g~~~l~p~Q~~ai~~~---l~~g~--------nvlv~aPTGsGKTl~~~l~il~~l~-~~~~k~l~i~PtraL~~q~ 91 (715)
T 2va8_A 27 GIKKLNPPQTEAVKKG---LLEGN--------RLLLTSPTGSGKTLIAEMGIISFLL-KNGGKAIYVTPLRALTNEK 91 (715)
T ss_dssp SCCBCCHHHHHHHHTT---TTTTC--------CEEEECCTTSCHHHHHHHHHHHHHH-HSCSEEEEECSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH---HHCCC--------CEEEECCCCCHHHHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHH
T ss_conf 9999999999999999---96899--------6999829985499999999999998-6799199981889999999
No 16
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.18 E-value=3.7e-06 Score=55.40 Aligned_cols=65 Identities=18% Similarity=0.079 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 66684289999999888875124555554112477614886788999999999999708997799971537999999
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~ 123 (367)
+|..|++||.+++... ...+ ..+.|.++.|+|||.++...++..+.. .+.++++++||..=+.+.
T Consensus 20 g~~~l~~~Q~~ai~~~---~~~g--------~~~lv~aPTGsGKTlva~l~il~~l~~-~~~k~l~i~Pt~aL~~Q~ 84 (720)
T 2zj8_A 20 GIESFYPPQAEALKSG---ILEG--------KNALISIPTASGKTLIAEIAMVHRILT-QGGKAVYIVPLKALAEEK 84 (720)
T ss_dssp TCCBCCHHHHHHHTTT---GGGT--------CEEEEECCGGGCHHHHHHHHHHHHHHH-HCSEEEEECSSGGGHHHH
T ss_pred CCCCCCHHHHHHHHHH---HHCC--------CCEEEECCCCCHHHHHHHHHHHHHHHH-CCCCEEEECCHHHHHHHH
T ss_conf 9999999999999999---9779--------979998099863999999999999996-799199980889999999
No 17
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.09 E-value=5.3e-06 Score=54.44 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 66684289999999888875124555554112477614886788999999999999708997799971537999999
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~ 123 (367)
++..+.+||.+++..+.++ . .+.|.++.|+|||.++...++-.+. .+.++++++|+..-+.+.
T Consensus 22 Gi~~L~p~Q~~ai~~i~~g----~--------nvlv~aPTGsGKTlia~l~il~~~~--~~~r~l~i~P~~aL~~q~ 84 (702)
T 2p6r_A 22 GIEELFPPQAEAVEKVFSG----K--------NLLLAMPTAAGKTLLAEMAMVREAI--KGGKSLYVVPLRALAGEK 84 (702)
T ss_dssp ---CCCCCCHHHHHHHTTC----S--------CEEEECSSHHHHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCHHHHHHHHHHHHHHH--CCCCEEEECCHHHHHHHH
T ss_conf 9999999999999999839----9--------9999839985399999999999986--399799991889999999
No 18
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.08 E-value=2.2e-05 Score=50.63 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC------CEEEEECCCHH
Q ss_conf 436668428999999988887512455555411247761488678899999999999970899------77999715379
Q gi|254781187|r 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSET 118 (367)
Q Consensus 45 ~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~------~~v~~~A~t~~ 118 (367)
-.+|..|++.|.+.+..+-++ . .+.+.|..|+|||.....-++-.+...+. ..+++++||..
T Consensus 73 ~~g~~~pt~iQ~~aip~il~g----~--------dvi~~a~TGsGKTlafllP~l~~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 73 KSGYKIPTPIQKCSIPVISSG----R--------DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp HTTCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHH
T ss_pred HCCCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCEEEEECCCHH
T ss_conf 779999999999999999759----9--------8899889999789999999999864244101047974999928799
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254781187|r 119 QLKNTLWAEVSKWL 132 (367)
Q Consensus 119 Q~~~~lw~ei~k~~ 132 (367)
.+..+ ..++.+..
T Consensus 141 L~~q~-~~~~~~~~ 153 (434)
T 2db3_A 141 LAIQI-FNEARKFA 153 (434)
T ss_dssp HHHHH-HHHHHHHT
T ss_pred HHHHH-HHHHHHHH
T ss_conf 99988-87665542
No 19
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.07 E-value=3.3e-05 Score=49.59 Aligned_cols=79 Identities=15% Similarity=0.072 Sum_probs=58.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHH
Q ss_conf 43666842899999998888751245555541124776148867889999999999997089-97799971537999999
Q gi|254781187|r 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNT 123 (367)
Q Consensus 45 ~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~ 123 (367)
-.+|..|++.|.+.+..+-+. . .+.|.|..|+|||.....-++..+...+ ..++++++||..-+.++
T Consensus 60 ~~G~~~pt~IQ~~aip~il~g----~--------dvlv~A~TGSGKTla~~lp~l~~~~~~~~~~~~lil~PtreLa~q~ 127 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLALQG----R--------DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQI 127 (249)
T ss_dssp HTTCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHH
T ss_conf 879999999999999999779----9--------9899827999661389712222324467774499977758987666
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999998623
Q gi|254781187|r 124 LWAEVSKWLSMLP 136 (367)
Q Consensus 124 lw~ei~k~~~~~~ 136 (367)
...++++.....
T Consensus 128 -~~~~~~l~~~~~ 139 (249)
T 3ber_A 128 -SEQFEALGSSIG 139 (249)
T ss_dssp -HHHHHHHHGGGT
T ss_pred -HHHHHHHCCCCC
T ss_conf -677664303678
No 20
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.06 E-value=0.00015 Score=45.51 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.|+++|.+++..+..+- |..|.++-|+|||.++..++.. -+.++++++|+..-+.+ +-.+++
T Consensus 93 ~Lr~yQ~eav~~~~~~~------------~gvi~~pTGsGKT~ial~~i~~-----~~~~~LivvPt~~L~~Q-~~~~~~ 154 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDK------------RGCIVLPTGSGKTHVAMAAINE-----LSTPTLIVVPTLALAEQ-WKERLG 154 (472)
T ss_dssp CBCHHHHHHHHHHTTTT------------EEEEECCTTSCHHHHHHHHHHH-----HCSCEEEEESSHHHHHH-HHHHGG
T ss_pred CCCHHHHHHHHHHHHCC------------CCEEECCCCCCHHHHHHHHHHH-----HCCCEEEEECCHHHHHH-HHHHHH
T ss_conf 97999999999999679------------9899978998699999999998-----48999999787999999-999998
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-EECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 999862312112333321000123332211113457761266-2101354455652101135862899975455998899
Q gi|254781187|r 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI-TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 (367)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~ 208 (367)
++.... + ..+.. ..+ ......+ +..... ...+. .+..+.++|+||+..++...+
T Consensus 155 ~~~~~~------------v--~~~~g-----~~~-~~~~i~i~t~~~~~-~~~~~----~~~~~~lvI~DE~h~~~~~~~ 209 (472)
T 2fwr_A 155 IFGEEY------------V--GEFSG-----RIK-ELKPLTVSTYDSAY-VNAEK----LGNRFMLLIFDEVHHLPAESY 209 (472)
T ss_dssp GGCGGG------------E--EEBSS-----SCB-CCCSEEEEEHHHHH-HTHHH----HTTTCSEEEEETGGGTTSTTT
T ss_pred HCCCCE------------E--EEECC-----CCC-CCCEEEEEEEHHHH-HCHHH----HCCCCCEEEEECHHHCCCHHH
T ss_conf 527844------------8--88526-----534-45508999616665-35786----423667899522020010013
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCCH
Q ss_conf 9989874069882589998078999876
Q gi|254781187|r 209 KSILGFFTELNPNRFWIMTSNTRRLNGW 236 (367)
Q Consensus 209 e~i~g~Lt~~~~~~~~i~igNP~r~~g~ 236 (367)
..+.-.. ..+..+.++++|.+..+.
T Consensus 210 ~~i~~~~---~~~~~l~ltaT~~r~~~~ 234 (472)
T 2fwr_A 210 VQIAQMS---IAPFRLGLTATFEREDGR 234 (472)
T ss_dssp HHHHHTC---CCSEEEEEESCCCCTTSG
T ss_pred HHHHHCC---CCCEEEEEEEEEECCCCH
T ss_conf 5654225---400476310013035303
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.03 E-value=2.3e-05 Score=50.55 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 66684289999999888875124555554112477614886788999999999999708997799971537999999999
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ 126 (367)
+|..|++.|.+.+..+-++ . .+.|.|+.|+|||.+...-++ ..+.+++++.|+..-+.+. ..
T Consensus 13 g~~~~~p~Q~~ai~~~l~g----~--------dviv~apTGsGKT~~~~lp~l-----~~~~~~lilvP~~~L~~q~-~~ 74 (337)
T 2z0m_A 13 GFKNFTEVQSKTIPLMLQG----K--------NVVVRAKTGSGKTAAYAIPIL-----ELGMKSLVVTPTRELTRQV-AS 74 (337)
T ss_dssp TCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSSHHHHHHHHHH-----HHTCCEEEECSSHHHHHHH-HH
T ss_pred CCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCHHHHHHHHHHH-----HHCCCEEEEECCHHHHHHH-HH
T ss_conf 9999999999999999849----9--------899989999569999999999-----8589889994678998888-88
Q ss_pred HHHHHHHH
Q ss_conf 99999986
Q gi|254781187|r 127 EVSKWLSM 134 (367)
Q Consensus 127 ei~k~~~~ 134 (367)
+++++...
T Consensus 75 ~~~~~~~~ 82 (337)
T 2z0m_A 75 HIRDIGRY 82 (337)
T ss_dssp HHHHHTTT
T ss_pred HHHHHCCC
T ss_conf 77541034
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.01 E-value=2.8e-05 Score=49.98 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=52.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
Q ss_conf 36668428999999988887512455555411247761488678899999999999970899779997153799999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw 125 (367)
.+|..|+++|.+++..+-..-+ .+.|.++-|+|||.+...-++-.+....+.+++++.|+..-+.+..
T Consensus 24 ~g~~~~t~~Q~~ai~~~l~g~~-----------~vlv~apTGsGKT~~~~lp~l~~~~~~~~~~~li~~p~~~l~~q~~- 91 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFLNDEY-----------NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVA- 91 (367)
T ss_dssp HTCCSCCHHHHHHHHHHHHTCS-----------EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHCCCC-----------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHH-
T ss_conf 7999999999999999975999-----------9999889997699999999999865428966999951067667778-
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q gi|254781187|r 126 AEVSKWLS 133 (367)
Q Consensus 126 ~ei~k~~~ 133 (367)
..+.++..
T Consensus 92 ~~~~~~~~ 99 (367)
T 1hv8_A 92 DEIESLKG 99 (367)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHC
T ss_conf 89998731
No 23
>3b6e_A Interferon-induced helicase C domain-containing protein 1; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, structural genomics; 1.60A {Homo sapiens}
Probab=98.01 E-value=7.6e-06 Score=53.48 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH----CCCCEEEEECCCHHHHHHHHH
Q ss_conf 8428999999988887512455555411247761488678899999999999970----899779997153799999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANSETQLKNTLW 125 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~----~~~~~v~~~A~t~~Q~~~~lw 125 (367)
.+|+||.|++..+.++ .++.|.++.|+|||.++...+...+.. .+..++++++|+..-+.+. +
T Consensus 33 ~lr~~Q~eai~~~~~~------------~n~iv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lvv~p~~~L~~q~-~ 99 (216)
T 3b6e_A 33 QLRPYQMEVAQPALEG------------KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQL-F 99 (216)
T ss_dssp CCCHHHHHHHHHHHTT------------CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHH-H
T ss_pred CCCHHHHHHHHHHHHC------------CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHH-H
T ss_conf 9899999999999958------------99899918998489999999999987321236786089980819999999-9
Q ss_pred HHHHHHHHH
Q ss_conf 999999986
Q gi|254781187|r 126 AEVSKWLSM 134 (367)
Q Consensus 126 ~ei~k~~~~ 134 (367)
.+..+....
T Consensus 100 ~~~~~~~~~ 108 (216)
T 3b6e_A 100 RKEFQPFLK 108 (216)
T ss_dssp HHTHHHHHT
T ss_pred HHHHHHHCC
T ss_conf 999987203
No 24
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphoprotein, RNA-binding, ATP-binding; 3.50A {Homo sapiens}
Probab=98.00 E-value=2e-05 Score=50.85 Aligned_cols=76 Identities=17% Similarity=0.075 Sum_probs=52.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHH
Q ss_conf 36668428999999988887512455555411247761488678899999999999970-89977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~-~~~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|++.|.+++..+-++. .+.|.|+.|+|||.....-++-.+.. ..+.++++++|+..-+.++
T Consensus 58 ~g~~~pt~iQ~~ai~~il~g~------------dvlv~apTGsGKTla~~lpil~~~~~~~~~~~~lil~Pt~~L~~Q~- 124 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCIKGY------------DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI- 124 (414)
T ss_dssp TTCCSCCHHHHHHHHHHHTTC------------CEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH-
T ss_conf 799999999999999998699------------8999899997488999999999765336787499995849999999-
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999986
Q gi|254781187|r 125 WAEVSKWLSM 134 (367)
Q Consensus 125 w~ei~k~~~~ 134 (367)
..+++++...
T Consensus 125 ~~~~~~~~~~ 134 (414)
T 3eiq_A 125 QKVVMALGDY 134 (414)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHCC
T ss_conf 9999863034
No 25
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.00 E-value=0.00011 Score=46.31 Aligned_cols=154 Identities=12% Similarity=0.022 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 42899999998888751245555541124776148867889999999999997089977999715379999999999999
Q gi|254781187|r 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 (367)
Q Consensus 51 p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k 130 (367)
-+++|.+.++-+....+.+. ...++-.=|.|||..+.+++..+....+..+++|++|+. +....-.|+++
T Consensus 38 L~~~Q~~gv~~~~~~~~~~~--------g~iLADe~GlGKT~~ai~~~~~~~~~~~~~~~LIV~P~s--l~~qW~~Ei~k 107 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLGF--------GICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS--VLKNWEEELSK 107 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTTC--------CEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST--THHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCC--------CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECHH--HHHHHHHHHHH
T ss_conf 70999999999998253799--------889870896519899999999999848999789998689--99999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 99862312112333321000123332211113457761266210135445565210113586289997545599889999
Q gi|254781187|r 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 (367)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~ 210 (367)
|...+..... . .............++...... ......+.....++|+|||..+.+.....
T Consensus 108 ~~~~~~v~~~---~------------~~~~~~~~~~~~iii~~~~~~----~~~~~~~~~~~~~vI~DEaH~~~~~~~~~ 168 (500)
T 1z63_A 108 FAPHLRFAVF---H------------EDRSKIKLEDYDIILTTYAVL----LRDTRLKEVEWKYIVIDEAQNIKNPQTKI 168 (500)
T ss_dssp HCTTSCEEEC---S------------SSTTSCCGGGSSEEEEEHHHH----TTCHHHHTCCEEEEEEETGGGGSCTTSHH
T ss_pred HCCCCEEEEE---C------------CCHHHHHHCCCCEEEEEHHHH----HHHHHHHHCCCCEEEEEHHHHHCCCHHHH
T ss_conf 7798758751---4------------851342003587899843666----65667651564378761433221302678
Q ss_pred HHHHHHCCCCCEEEEEEECCCCCC
Q ss_conf 898740698825899980789998
Q gi|254781187|r 211 ILGFFTELNPNRFWIMTSNTRRLN 234 (367)
Q Consensus 211 i~g~Lt~~~~~~~~i~igNP~r~~ 234 (367)
..... ....+..|+++|||-.+.
T Consensus 169 ~~~~~-~~~~~~rllLTgTP~~n~ 191 (500)
T 1z63_A 169 FKAVK-ELKSKYRIALTGTPIENK 191 (500)
T ss_dssp HHHHH-TSCEEEEEEECSSCSTTC
T ss_pred HHHHH-HHCCCEEEEEECCCCCCC
T ss_conf 88887-420574798511734587
No 26
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.00 E-value=0.00036 Score=43.19 Aligned_cols=148 Identities=20% Similarity=0.167 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 8428999999988887512455555411247761488678899999999999970--89977999715379999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST--RPGMSIICIANSETQLKNTLWAE 127 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~--~~~~~v~~~A~t~~Q~~~~lw~e 127 (367)
+...||.+++..... ++ -..|.+|=|+|||+++..++.+++.. .++.+|+++|||.+-+..+. ..
T Consensus 149 ~~~~~Q~~Av~~al~---~~---------~~lI~GgpGTGKTtti~~~i~~l~~~~~~~~~~Ill~ApTgkAa~~L~-e~ 215 (608)
T 1w36_D 149 DEINWQKVAAAVALT---RR---------ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT-ES 215 (608)
T ss_dssp TSCCHHHHHHHHHHT---BS---------EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHC---CC---------EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HH
T ss_conf 998899999999970---99---------089993899729999999999999974157984999948399999999-99
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99999862312112333321000123332211113457761266210135445565210113586289997545599889
Q gi|254781187|r 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 (367)
Q Consensus 128 i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i 207 (367)
+.+-......... ........ .......++...+.. ... .+.. +.....++++||++.++...
T Consensus 216 ~~~~~~~i~~~~~---~~~~~~~~---~~t~h~ll~~~~~~~-----~~~-~~~~-----~~~~~~~~ivDE~sm~~~~~ 278 (608)
T 1w36_D 216 LGKALRQLPLTDE---QKKRIPED---ASTLHRLLGAQPGSQ-----RLR-HHAG-----NPLHLDVLVVDEASMIDLPM 278 (608)
T ss_dssp HTHHHHHSSCCSC---CCCSCSCC---CBTTTSCC-----------------CTT-----SCCSCSEEEECSGGGCBHHH
T ss_pred HHHHHHHCCCCCH---HHHHCCCH---HHHHHHHHHCCCCCH-----HHH-HHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf 8767740462200---33322321---556999974165303-----667-6564-----11122367767886541998
Q ss_pred HHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 99989874069882589998078
Q gi|254781187|r 208 NKSILGFFTELNPNRFWIMTSNT 230 (367)
Q Consensus 208 ~e~i~g~Lt~~~~~~~~i~igNP 230 (367)
+..+..++.. +.+. +..|.+
T Consensus 279 ~~~~~~a~~~-~~~l--~l~gD~ 298 (608)
T 1w36_D 279 MSRLIDALPD-HARV--IFLGDR 298 (608)
T ss_dssp HHHHHHTCCT-TCEE--EEEECT
T ss_pred HHHHHHHHHC-CCEE--EEECCH
T ss_conf 8778776205-6479--983330
No 27
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.87 E-value=0.00011 Score=46.26 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 01259888855430146688844366684289999999888875124555554112477614886788999999999999
Q gi|254781187|r 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 (367)
Q Consensus 23 ~~~~~~~~f~~~~~~w~~~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~ 102 (367)
+...+|..+= .-++=...+.-.+|..|++-|.+.+-.+-++ . -+.+.|..|+|||.....-++..+
T Consensus 20 ~~~~sF~~l~--l~~~ll~~L~~~g~~~pt~IQ~~aip~il~g----~--------dvi~~A~TGsGKTlayllP~l~~i 85 (253)
T 1wrb_A 20 NVIENFDELK--LDPTIRNNILLASYQRPTPIQKNAIPAILEH----R--------DIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp SCCCSSGGGS--CCCSTTTTTTTTTCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCCCEEEEHHHHHHHH
T ss_conf 7559977779--8999999999879999999999999999779----9--------889982599997316617999998
Q ss_pred HHC----------CCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 708----------997799971537999999999999999862
Q gi|254781187|r 103 STR----------PGMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 103 ~~~----------~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
... .+.++++++||...+.++ ..++.......
T Consensus 86 ~~~~~~~~~~~~~~~~~alIl~PTreL~~qv-~~~~~~~~~~~ 127 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQI-LSESQKFSLNT 127 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHH-HHHHHHHHTTS
T ss_pred HHCCCCCCCCCCCCCCEEEEECCCHHHHHHH-HHHHHHHCCCC
T ss_conf 7312112345667884799975777775302-45544212578
No 28
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.84 E-value=8.6e-05 Score=47.03 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.+|++|.+++..|.+.++++. .+.|-|+-|+|||......++- .+.+|+++.+|..|+.+. ..+++
T Consensus 7 ~~R~~Q~~~~~~i~~al~~~~--------~~~ieApTGtGKTla~L~~a~~-----~~~kvii~t~T~~l~~Q~-~~e~~ 72 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGK--------TLLLNAKPGLGKTVFVEVLGMQ-----LKKKVLIFTRTHSQLDSI-YKNAK 72 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTC--------EEEEECCTTSCHHHHHHHHHHH-----HTCEEEEEESCHHHHHHH-HHHHG
T ss_pred CCCHHHHHHHHHHHHHHHCCC--------CEEEECCCCHHHHHHHHHHHHH-----HCCCEEEECCCHHHHHHH-HHHHH
T ss_conf 858899999999999994699--------0999928816899999999999-----799199996989999999-99715
Q ss_pred H
Q ss_conf 9
Q gi|254781187|r 130 K 130 (367)
Q Consensus 130 k 130 (367)
+
T Consensus 73 ~ 73 (540)
T 2vl7_A 73 L 73 (540)
T ss_dssp G
T ss_pred C
T ss_conf 6
No 29
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.83 E-value=0.00013 Score=46.02 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=54.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHH
Q ss_conf 43666842899999998888751245555541124776148867889999999999997089-97799971537999999
Q gi|254781187|r 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNT 123 (367)
Q Consensus 45 ~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~ 123 (367)
-.+|..|++.|.+++..|-.+ . .+.+.|+.|+|||.....-++....... ..++++++|+...+..+
T Consensus 41 ~~g~~~pt~iQ~~aip~il~g----~--------dvli~a~TGsGKTlay~lp~l~~~~~~~~~~~~lil~p~~~l~~q~ 108 (230)
T 2oxc_A 41 AAGFERPSPVQLKAIPLGRCG----L--------DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQI 108 (230)
T ss_dssp HTTCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHCC----C--------CEEEEECCCCCCCEEEECCCHHHHHCCCCCCEEEECCCCHHHHHHH
T ss_conf 879999999999999998579----9--------8999927987642023043023320035776234407999999988
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254781187|r 124 LWAEVSKWLS 133 (367)
Q Consensus 124 lw~ei~k~~~ 133 (367)
..+++++..
T Consensus 109 -~~~~~~l~~ 117 (230)
T 2oxc_A 109 -HSVITAIGI 117 (230)
T ss_dssp -HHHHHHHTT
T ss_pred -HHHHHHHHH
T ss_conf -899887764
No 30
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.81 E-value=7.2e-05 Score=47.51 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=50.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997-089977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~-~~~~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|+++|.+++..+-++ . .+.|.|..|+|||......++.... .....++++++||...+.+..
T Consensus 55 ~g~~~pt~iQ~~ai~~~l~g----~--------dvlv~apTGsGKTl~f~lp~l~~~~~~~~~~~~lil~Pt~~l~~q~~ 122 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQIIKG----R--------DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQ 122 (410)
T ss_dssp HTCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 79999899999999999869----9--------98998999836899999999983135667862899938399999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254781187|r 125 WAEVSKWL 132 (367)
Q Consensus 125 w~ei~k~~ 132 (367)
..+.++.
T Consensus 123 -~~~~~~~ 129 (410)
T 2j0s_A 123 -KGLLALG 129 (410)
T ss_dssp -HHHHHHT
T ss_pred -HHHHHHH
T ss_conf -9999863
No 31
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.76 E-value=0.00013 Score=45.83 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=54.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC-------CCCEEEEECCCHH
Q ss_conf 366684289999999888875124555554112477614886788999999999999708-------9977999715379
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-------PGMSIICIANSET 118 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~-------~~~~v~~~A~t~~ 118 (367)
.+|..|++-|.+++..+-++. .+.|.|..|+|||.....-++..+... .+.++++++||..
T Consensus 38 ~g~~~pt~iQ~~aip~il~g~------------dviv~a~TGsGKTlay~lp~l~~~~~~~~~~~~~~~~~alil~Ptre 105 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIILQGI------------DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRE 105 (228)
T ss_dssp HTCCSCCHHHHHHHHHHHTTC------------CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCEEEEECCCHH
T ss_conf 799999999999999996799------------88998789998636655328998762000000157854999828588
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254781187|r 119 QLKNTLWAEVSKW 131 (367)
Q Consensus 119 Q~~~~lw~ei~k~ 131 (367)
-+.++. ..+.+.
T Consensus 106 La~qi~-~~~~~l 117 (228)
T 3iuy_A 106 LALHVE-AECSKY 117 (228)
T ss_dssp HHHHHH-HHHHHH
T ss_pred HHHHHH-HHHHHH
T ss_conf 999999-999986
No 32
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, helicase, hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A*
Probab=97.75 E-value=0.00017 Score=45.26 Aligned_cols=79 Identities=16% Similarity=0.052 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEECCCHHHH
Q ss_conf 366684289999999888875124555554112477614886788999999999999708-----997799971537999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-----PGMSIICIANSETQL 120 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~-----~~~~v~~~A~t~~Q~ 120 (367)
.+|..|++-|.+++..+-... . .-+.|.|..|+|||.+...-++-.+... .+.++++++||...+
T Consensus 90 ~gf~~~t~iQ~~ai~~il~g~----~------~dvlv~ApTGSGKTlay~lP~l~~l~~~~~~~~~~~~~lil~PtreLa 159 (563)
T 3i5x_A 90 MEFPGLTPVQQKTIKPILSSE----D------HDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLA 159 (563)
T ss_dssp TCCSSCCHHHHHHHHHHHSSS----S------EEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC----C------CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHH
T ss_conf 699999999999999997699----9------988998899850999999999999984443567884899981559999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999999862
Q gi|254781187|r 121 KNTLWAEVSKWLSML 135 (367)
Q Consensus 121 ~~~lw~ei~k~~~~~ 135 (367)
.++ ..+++++....
T Consensus 160 ~Qi-~~~~~~~~~~~ 173 (563)
T 3i5x_A 160 LQI-EAEVKKIHDMN 173 (563)
T ss_dssp HHH-HHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHC
T ss_conf 999-99999998632
No 33
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A
Probab=97.73 E-value=6.7e-05 Score=47.69 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=53.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC----CCEEEEECCCHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997089----977999715379999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLK 121 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~----~~~v~~~A~t~~Q~~ 121 (367)
.+|..|++.|.+.+..+-+.. .+.+.|..|+|||.....-++..+.... +.++++++||..-+.
T Consensus 19 ~g~~~pt~iQ~~aip~il~g~------------dvi~~a~TGsGKTlay~lp~l~~~~~~~~~~~~~~alil~PtreLa~ 86 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLALEGK------------DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELAL 86 (207)
T ss_dssp TTCCSCCHHHHHHHHHHHTTC------------CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCCCEEECCHHHHHCCCCCCCCCCEEEEEECCHHHHH
T ss_conf 799999999999999997799------------88998889999743430507765301100368987999979899999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254781187|r 122 NTLWAEVSKW 131 (367)
Q Consensus 122 ~~lw~ei~k~ 131 (367)
++ ..++++.
T Consensus 87 qi-~~~~~~l 95 (207)
T 2gxq_A 87 QV-ASELTAV 95 (207)
T ss_dssp HH-HHHHHHH
T ss_pred HH-HHHHHHH
T ss_conf 99-9988876
No 34
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2w74_B*
Probab=97.64 E-value=0.00065 Score=41.62 Aligned_cols=167 Identities=13% Similarity=-0.026 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCC--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHH
Q ss_conf 684289999999888875124555--55411247761488678899999999999970-899779997153799999999
Q gi|254781187|r 49 SQPHRWQLEFMEAVDVHCHSNVNN--SNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLW 125 (367)
Q Consensus 49 ~~p~~wq~~~l~~~~~~~~~~~~~--~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~-~~~~~v~~~A~t~~Q~~~~lw 125 (367)
.-||..|..+.+++.+..+..... ......+..|--..|+|||..+.+++ +.+.. ....+|+++++...=.. -+.
T Consensus 270 ~~~R~~Q~~Av~~i~~~v~~~~~~~~~~~~~~~Gli~haTGSGKTlT~~~~a-~~l~~~~~~~~VLflvDR~~L~~-Q~~ 347 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDY-QTM 347 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCH-HHH
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH-HHHHHCCCCCCEEEEECHHHHHH-HHH
T ss_conf 9724030999999999998520021003578726999778982369999999-99982877884799967188999-999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 9999999862312112333321000123332211113457761266210135445-565210113586289997545599
Q gi|254781187|r 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER-PDTFVGPHNTHGMAVFNDEASGTP 204 (367)
Q Consensus 126 ~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~ea~~g~h~~~~~l~ivDEAsgI~ 204 (367)
.++.+. .+.. ...... ...........+.+..+...+...... .....-.. ....++|+|||....
T Consensus 348 ~~f~~~---~~~~--~~~~~~-------~~~l~~~~~~~~~~ii~ttiqk~~~~~~~~~~~~~~-~~~~~iIvDEaHRs~ 414 (1038)
T 2w00_A 348 KEYQRF---SPDS--VNGSEN-------TAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVY-NQQVVFIFDECHRSQ 414 (1038)
T ss_dssp HHHHTT---STTC--SSSSCC-------CHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGG-GSCEEEEEESCCTTH
T ss_pred HHHHHH---CCCC--CEECCC-------HHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHCCCC-CCCEEEEEECCCCCC
T ss_conf 999974---5765--310342-------676776542035552477788741122221000144-653089995677534
Q ss_pred HHH-HHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 889-99989874069882589998078999
Q gi|254781187|r 205 DII-NKSILGFFTELNPNRFWIMTSNTRRL 233 (367)
Q Consensus 205 d~i-~e~i~g~Lt~~~~~~~~i~igNP~r~ 233 (367)
-.- ...+...+ .+ ......+++|.+.
T Consensus 415 ~~~~~~~~~~~~--~~-a~~~g~T~TP~~~ 441 (1038)
T 2w00_A 415 FGEAQKNLKKKF--KR-YYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHHHHHHHC--SS-EEEEEEESSCCCS
T ss_pred CCCHHHHHHHHH--HH-HHHHCCCCCCCCC
T ss_conf 241157777653--56-5542013544200
No 35
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 2.51A {Homo sapiens}
Probab=97.64 E-value=0.00029 Score=43.80 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997089-977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|++-|.+.+-.+-.. .+. .+.|.|+.|+|||.....-++..+...+ +.++++++||..-+..+
T Consensus 110 ~g~~~pt~iQ~~aIp~il~~--~g~--------dviv~a~TGSGKTlaf~lpi~~~~~~~~~~~~alil~PtreLa~qi- 178 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLMLAE--PPQ--------NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQT- 178 (300)
T ss_dssp TTCCSCCHHHHHHHHHHTSS--SCC--------CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHHC--CCC--------EEEEECCCCCCHHHHHHCCHHHCCCCCCCCCEEEEEECCHHHHHHH-
T ss_conf 79999999999999999836--897--------2999868998278886220121234346786399993989999999-
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781187|r 125 WAEVSKW 131 (367)
Q Consensus 125 w~ei~k~ 131 (367)
..+++.+
T Consensus 179 ~~~~~~~ 185 (300)
T 3fmo_B 179 GKVIEQM 185 (300)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9998751
No 36
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.62 E-value=0.00034 Score=43.34 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=49.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-------------------HCC
Q ss_conf 3666842899999998888751245555541124776148867889999999999997-------------------089
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-------------------TRP 106 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~-------------------~~~ 106 (367)
.+|..|+++|.+++..+-++ . .+.|.|+.|+|||.+...-++-.+. ...
T Consensus 33 ~g~~~pt~iQ~~ai~~~l~g----~--------dvii~apTGsGKTlay~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPIIKEK----R--------DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQ 100 (417)
T ss_dssp HTCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSB
T ss_pred CCCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 79999999999999999769----9--------88998789957999999999999753166224455543112234204
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 97799971537999999999999999862
Q gi|254781187|r 107 GMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 107 ~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
...+++++|+...+... ...+.+.....
T Consensus 101 ~~~~lii~pt~~l~~~~-~~~~~~~~~~~ 128 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQI-YEEARKFSYRS 128 (417)
T ss_dssp CCSEEEECSSHHHHHHH-HHHHHHHHTTS
T ss_pred CCEEEEECCCHHHHHHH-HHHHHHHCCCC
T ss_conf 76189987989999876-66654301355
No 37
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination/DNA binding complex; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.57 E-value=0.0021 Score=38.57 Aligned_cols=171 Identities=16% Similarity=0.128 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-----CCEEEEECCCHHHHHHHHHH
Q ss_conf 2899999998888751245555541124776148867889999999999997089-----97799971537999999999
Q gi|254781187|r 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWA 126 (367)
Q Consensus 52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-----~~~v~~~A~t~~Q~~~~lw~ 126 (367)
++.|.+-++=+.+....... ...+...++--=|.|||..+-+++..++...+ ..+++|++|+ .+....-.
T Consensus 57 ~phQ~~gv~~l~~~~~~~~~---~~~~G~iLADemGLGKTlqaia~i~~l~~~~~~~~~~~~~~LIV~P~--sl~~qW~~ 131 (644)
T 1z3i_X 57 RPHQREGVKFLWDCVTGRRI---ENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS--SLVRNWYN 131 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSSS---TTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCC---CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECH--HHHHHHHH
T ss_conf 39999999999985650033---58887798638981797999999999998575326878808999788--99999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCH
Q ss_conf 99999986231211233332100012333221111345776126621-01354455652101135862899975455998
Q gi|254781187|r 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC-RTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 (367)
Q Consensus 127 ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d 205 (367)
|+++|...........-.. ........................+.. ...+. ..+. ++.....++|+|||..+.+
T Consensus 132 E~~k~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~-~~~~---l~~~~~~~vI~DEaH~~kn 206 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGS-KDEIDSKLVNFISQQGMRIPTPILIISYETFRL-HAEV---LHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHGGGCCEEEECSSC-HHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHH-HTTT---TTTSCCCEEEETTGGGCCT
T ss_pred HHHHHCCCCEEEEEEECCC-HHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHH-HHHH---HHCCCCCEEEEECCCCCCC
T ss_conf 9999738761599984896-888999999877642766676589975999997-8999---8538988799412010344
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 8999989874069882589998078999
Q gi|254781187|r 206 IINKSILGFFTELNPNRFWIMTSNTRRL 233 (367)
Q Consensus 206 ~i~e~i~g~Lt~~~~~~~~i~igNP~r~ 233 (367)
..-.......... .+..|+++|+|-.+
T Consensus 207 ~~s~~~~~~~~~~-~~~~~lltgTP~~n 233 (644)
T 1z3i_X 207 SDNQTYLALNSMN-AQRRVLISGTPIQN 233 (644)
T ss_dssp TCHHHHHHHHHHC-CSEEEEECSSCSGG
T ss_pred CCCHHHHHHHHCC-CHHHHHHCCCCCCC
T ss_conf 0219999987413-02543330661128
No 38
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.54 E-value=0.00075 Score=41.26 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHH
Q ss_conf 36668428999999988887512455555411247761488678899999999999970-8997799971537999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNT 123 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~-~~~~~v~~~A~t~~Q~~~~ 123 (367)
.+|..|++.|.+++..+-....+ .+.|.|+.|+|||.+...-++-.+.. .....+++++|+...+...
T Consensus 43 ~g~~~pt~iQ~~aip~il~~~~k----------dvlv~apTGsGKTl~f~lpil~~l~~~~~~~~~lil~p~~~l~~q~ 111 (412)
T 3fht_A 43 MGFNRPSKIQENALPLMLAEPPQ----------NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQT 111 (412)
T ss_dssp TTCCSCCHHHHHHHHHHHSSSCC----------CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCC----------CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH
T ss_conf 79999999999999999759999----------8899899995789999999997441037874699990749988879
No 39
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.53 E-value=0.00035 Score=43.29 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHH--HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999--9999999997089977999715379999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL--NAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~--~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~e 127 (367)
.||+.|.+++..|.+.+.++. .+.+-||-|+|||.. ++++ . .+.+|++..+|..|..... .|
T Consensus 3 ~~R~~Q~~~~~~i~~~l~~~~--------~~~iEApTGtGKTlayL~~al-~------~~~~vii~T~T~~lq~Q~~-~e 66 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNF--------LVALNAPTGSGKTLFSLLVSL-E------VKPKVLFVVRTHNEFYPIY-RD 66 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTC--------EEEEECCTTSSHHHHHHHHHH-H------HCSEEEEEESSGGGHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHCCC--------EEEEECCCHHHHHHHHHHHHH-H------HCCCEEEECCCHHHHHHHH-HH
T ss_conf 748899999999999994599--------399987983799999999999-9------7997999988799999999-99
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781187|r 128 VSKWL 132 (367)
Q Consensus 128 i~k~~ 132 (367)
+.+..
T Consensus 67 l~~l~ 71 (551)
T 3crv_A 67 LTKIR 71 (551)
T ss_dssp HTTCC
T ss_pred HHHHH
T ss_conf 99998
No 40
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.52 E-value=0.00029 Score=43.80 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=56.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997089-977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|++-|.+.+-.+-+.. .+.+.|..|+|||.....-++..+.... ..++++++||..-+.++
T Consensus 32 ~g~~~pt~iQ~~aip~il~g~------------dvii~a~TGSGKTlay~lp~~~~~~~~~~~~~~lil~PtreLa~qi- 98 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAILGM------------DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI- 98 (220)
T ss_dssp TTCCCCCHHHHHHHHHHHTTC------------CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCHHHHCCCHHHCCCCCCCCCEEEEECCCHHHHHHH-
T ss_conf 799999999999999997799------------8899777998720131141121135677883189937989999999-
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999862
Q gi|254781187|r 125 WAEVSKWLSML 135 (367)
Q Consensus 125 w~ei~k~~~~~ 135 (367)
...+++.....
T Consensus 99 ~~~~~~~~~~~ 109 (220)
T 1t6n_A 99 SKEYERFSKYM 109 (220)
T ss_dssp HHHHHHHTTTS
T ss_pred HHHHHHHHHHC
T ss_conf 99999998308
No 41
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.51 E-value=0.00069 Score=41.48 Aligned_cols=76 Identities=14% Similarity=0.042 Sum_probs=56.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-----CCEEEEECCCHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997089-----97799971537999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQL 120 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-----~~~v~~~A~t~~Q~ 120 (367)
.+|+.|++-|.+++..+-.+. .+.+.|..|+|||.....-++..+.... +.++++++||...+
T Consensus 43 ~g~~~pt~iQ~~aip~il~g~------------dvl~~a~TGSGKTlayllp~l~~i~~~~~~~~~~~~~lil~pt~~la 110 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLALQGK------------DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 110 (236)
T ss_dssp TTCCBCCHHHHHHHHHHHTTC------------CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHH
T ss_conf 799999999999999997799------------88998069997028886799875442003345684699975889999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999986
Q gi|254781187|r 121 KNTLWAEVSKWLSM 134 (367)
Q Consensus 121 ~~~lw~ei~k~~~~ 134 (367)
.++ ....++....
T Consensus 111 ~q~-~~~~~~l~~~ 123 (236)
T 2pl3_A 111 YQT-FEVLRKVGKN 123 (236)
T ss_dssp HHH-HHHHHHHTTT
T ss_pred HHH-HHHHHHHHCC
T ss_conf 745-5776653025
No 42
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.50 E-value=0.00038 Score=43.07 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=55.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CEEEEECCCHHHH
Q ss_conf 36668428999999988887512455555411247761488678899999999999970899-----7799971537999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-----MSIICIANSETQL 120 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~-----~~v~~~A~t~~Q~ 120 (367)
.+|..|++-|++++..+-+.. .+.+.|..|+|||.....-++-.+..... ..+++.+|+...+
T Consensus 72 ~Gf~~ptpiQ~~aIp~il~g~------------dviv~A~TGSGKTlay~lpil~~~~~~~~~~~~~~~~li~~pt~el~ 139 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLLEGR------------DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELA 139 (262)
T ss_dssp TTCCBCCHHHHHHHHHHHHTC------------CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH
T ss_conf 899999999999999998699------------96678899998179999999987765124565684699956357766
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999998
Q gi|254781187|r 121 KNTLWAEVSKWLS 133 (367)
Q Consensus 121 ~~~lw~ei~k~~~ 133 (367)
.++ +..+++...
T Consensus 140 ~q~-~~~~~~l~~ 151 (262)
T 3ly5_A 140 MQT-FGVLKELMT 151 (262)
T ss_dssp HHH-HHHHHHHTT
T ss_pred HHH-HHHHHHHHH
T ss_conf 778-999999743
No 43
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.48 E-value=0.00035 Score=43.26 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=51.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997089-977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|.+.|.+++..+-.. . .+.+.|..|+|||.....-++..+.... +..+++..|+...+..+
T Consensus 21 ~g~~~pt~iQ~~aip~il~G----~--------dvi~~a~tGsGKTlayllp~l~~~~~~~~~~~~~i~~~~~~l~~~~- 87 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIALSG----R--------DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV- 87 (206)
T ss_dssp TTCCSCCHHHHHHHHHHHTT----C--------CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHCC----C--------CEEEEECCCCCCEEEEECCHHHHCCCCCCCCCEEEEECCHHHHHHH-
T ss_conf 79999999999999999879----9--------8899930799840156434243012345786237873328899999-
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781187|r 125 WAEVSKW 131 (367)
Q Consensus 125 w~ei~k~ 131 (367)
...++..
T Consensus 88 ~~~~~~~ 94 (206)
T 1vec_A 88 SQICIQV 94 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999876
No 44
>3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A {Enterobacteria phage RB49} PDB: 3c6h_A
Probab=97.44 E-value=0.00014 Score=45.65 Aligned_cols=59 Identities=7% Similarity=0.035 Sum_probs=40.5
Q ss_pred CCEEECHHHHHH----------HHCCCCCCCCCCCEEEEEECCC-CCCCEEEEEEECCC--EEEEEHHHCHH
Q ss_conf 980782999864----------4315777788984899996387-78810899997088--36870420302
Q gi|254781187|r 293 VNNFIPHNYIEE----------AMSREAIDDLYAPLIMGCDIAG-EGGDKTVVVFRRGN--IIEHIFDWSAK 351 (367)
Q Consensus 293 ~d~~ip~~~ie~----------a~~~~~~~~~~~p~viGvDvAr-~G~D~Tvi~~r~G~--~v~~i~~~~~~ 351 (367)
-+++|+..-+.. ...++..|.++..|++|||||+ .|+|+|||.+.+-. ...+|.+|+.+
T Consensus 26 ~~TLI~~~~l~~l~~~~p~~~~g~~iwe~P~~g~~YvigvD~A~G~g~DyS~i~V~Dvt~~~~~qVA~~r~n 97 (232)
T 3c6a_A 26 MGTLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQIIDITEFPYKQVAVYHSN 97 (232)
T ss_dssp -CBSSCHHHHHHCCCCCCCCBTTEEESSCCCTTCCEEEEEECCCSSSSCCEEEEEEECSSSSEEEEEEEEES
T ss_pred CCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEECCC
T ss_conf 523458899954678796012999899368999849999974787688878799997679871489997403
No 45
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helicase, alternative splicing, ATP-binding; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.43 E-value=0.00054 Score=42.12 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=51.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHH
Q ss_conf 36668428999999988887512455555411247761488678899999999999970-89977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~-~~~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|++-|.+.+..+-.. ..+.+.|..|+|||.....-++..+.. .....+++++||..-+.++
T Consensus 48 ~g~~~pt~IQ~~aIp~il~g------------~dvi~~A~TGSGKTlayllp~~~~~~~~~~~~~~lIl~PtreLa~Qi- 114 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCIKG------------YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQI- 114 (237)
T ss_dssp HTCCSCCHHHHHHHHHHHTT------------CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHCC------------CCEEEECCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCHHHHHHHH-
T ss_conf 79999999999999999779------------98899798888982168645223424445676289952718899999-
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781187|r 125 WAEVSKW 131 (367)
Q Consensus 125 w~ei~k~ 131 (367)
...+++.
T Consensus 115 ~~~~~~l 121 (237)
T 3bor_A 115 QKVILAL 121 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999997
No 46
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.43 E-value=0.00069 Score=41.48 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=48.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997089-97799971537999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNT 123 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~ 123 (367)
.+|..|++-|...+..|-+.. .+.|.|..|+|||.....-++..+.... +.+.++..++...+...
T Consensus 22 ~g~~~pt~iQ~~aip~il~g~------------dvii~a~TGsGKTlayllp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGALRGE------------SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQI 88 (219)
T ss_dssp TTCCSCCHHHHHHHHHHHHTC------------CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCHHHHHHHH
T ss_conf 899999999999999996799------------8899817999840577635554022345676530111205677777
No 47
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 3.19A {Homo sapiens}
Probab=97.40 E-value=0.00094 Score=40.66 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=49.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCEEEEECCCHHHHHHHH
Q ss_conf 366684289999999888875124555554112477614886788999999999999-7089977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~-~~~~~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|++-|.+++..+-.+.. ..+.|.|..|+|||.....-++-.+ ....+.++++++||..-+.++
T Consensus 110 ~g~~~pt~iQ~~aip~il~~~g----------~dvlv~apTGSGKTlaf~lP~l~~l~~~~~~~~~lil~PtreLa~qi- 178 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAEPP----------QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQT- 178 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSBSC----------CEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHHCCC----------CCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH-
T ss_conf 7999999999999999981689----------95899848983799999999999763137886699994659999999-
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999986
Q gi|254781187|r 125 WAEVSKWLSM 134 (367)
Q Consensus 125 w~ei~k~~~~ 134 (367)
...+++....
T Consensus 179 ~~~~~~~~~~ 188 (479)
T 3fmp_B 179 GKVIEQMGKF 188 (479)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHC
T ss_conf 9999986302
No 48
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.39 E-value=0.0012 Score=40.12 Aligned_cols=72 Identities=18% Similarity=0.075 Sum_probs=52.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997089-977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|++-|.+.+..+-.+ . .+.+.|+.|+|||.....-++-.+.... ..++++++|+..-+..+
T Consensus 32 ~g~~~pt~IQ~~aip~il~g----~--------dvii~a~TGsGKTlay~lp~i~~i~~~~~~~~~lil~pt~el~~q~- 98 (224)
T 1qde_A 32 YGFEEPSAIQQRAIMPIIEG----H--------DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI- 98 (224)
T ss_dssp HTCCSCCHHHHHHHHHHHTT----C--------CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCCCEEEEECHHHHHHHCCCCCCEEEEEECCHHHHHHH-
T ss_conf 79999999999999999779----9--------8899898888751245211055551256683399992545254343-
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781187|r 125 WAEVSK 130 (367)
Q Consensus 125 w~ei~k 130 (367)
...+..
T Consensus 99 ~~~~~~ 104 (224)
T 1qde_A 99 QKVVMA 104 (224)
T ss_dssp HHHHHH
T ss_pred HHHHCC
T ss_conf 333222
No 49
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.39 E-value=0.0016 Score=39.24 Aligned_cols=67 Identities=16% Similarity=0.085 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997-089977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~-~~~~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|++-|.+++..+-... .+.|.|+.|+|||.....-++-... ......++++.++...+....
T Consensus 39 ~g~~~pt~iQ~~ai~~il~g~------------dviv~apTGsGKTlaf~lp~l~~~~~~~~~~~~li~~~~~~~~~q~~ 106 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAITGR------------DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTS 106 (400)
T ss_dssp TTCCSCCHHHHHHHHHHHHTC------------CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH
T ss_conf 799999999999999998599------------88998999883789999999996443147851899935389888999
No 50
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.35 E-value=0.0061 Score=35.68 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCCH
Q ss_conf 888443666842899999998888751245555541124776148867889999999999997089---97799971537
Q gi|254781187|r 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSE 117 (367)
Q Consensus 41 ~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~---~~~v~~~A~t~ 117 (367)
+.+|.. +.+.++|+.|.+|. -+.|.++.|+|||+.+--+++....... .++|+||-|..
T Consensus 58 ~~LPi~------~~~~~il~~i~~n~------------vvvV~G~TGsGKSTqiPq~Lle~~~~~~~~~~~~I~~tqPRR 119 (235)
T 3llm_A 58 ELLPVK------KFESEILEAISQNS------------VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRR 119 (235)
T ss_dssp HTSGGG------GGHHHHHHHHHHCS------------EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSH
T ss_pred HHCCCH------HHHHHHHHHHHHCC------------EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCH
T ss_conf 849916------88999999999799------------799993898999999999999867642788886599963737
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781187|r 118 TQLKN 122 (367)
Q Consensus 118 ~Q~~~ 122 (367)
--+..
T Consensus 120 ~aa~s 124 (235)
T 3llm_A 120 ISAVS 124 (235)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 51
>2kbe_A ATP-dependent RNA helicase DBP5; DBP5P, ATP-binding, cytoplasm, hydrolase, membrane, mRNA transport, nuclear pore complex; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00086 Score=40.90 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997089-977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~-~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|++-|...+..+-. +.. ..+.+.|..|+|||.....-++..+.... ...+++++++...+..+.
T Consensus 40 ~g~~~pt~iQ~~aIp~~l~----g~~------~dvli~a~TGsGKTlay~lp~l~~l~~~~~~~~~~il~~~~~~~~~~~ 109 (226)
T 2kbe_A 40 MKFQKPSKIQERALPLLLH----NPP------RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTL 109 (226)
T ss_dssp SSSSCCCSHHHHHHHHSSC----CSS------CCEEEESSTTCHHHHHHHHHHHHHCCCTTCCCCEEEECSSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHC----CCC------CCEEEECCCCCCCCEEEECCCHHEECCCCCCCEEEEEECCHHHHHHHH
T ss_conf 8999999999999999974----998------888998668987200222340101043578840899825578745577
No 52
>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.28 E-value=0.0083 Score=34.86 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf 2899999998888751245555541124776148867889999999999997089977999715379999999
Q gi|254781187|r 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~l 124 (367)
..=|.++++..- +++ =..|.++=|+|||+.++.++.. +...+..+|+++|||-..+.+++
T Consensus 358 N~sQ~~AV~~al---~~~---------lsLIqGPPGTGKT~Ti~~iI~~-L~~~~~~kILVcApSN~AVD~l~ 417 (800)
T 2wjy_A 358 NHSQVYAVKTVL---QRP---------LSLIQGPPGTGKTVTSATIVYH-LARQGNGPVLVCAPSNIAVDQLT 417 (800)
T ss_dssp CHHHHHHHHHHH---TSS---------EEEEECCTTSCHHHHHHHHHHH-HHTTCSSCEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHH---CCC---------CEEEECCCCCCHHHHHHHHHHH-HHHHCCCCEEEEECCHHHHHHHH
T ss_conf 999999999996---499---------7289899999950999999999-99706898999948669999999
No 53
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- binding, RNA-binding, methylation, mRNA processing; HET: ADP; 2.60A {Homo sapiens}
Probab=97.27 E-value=0.0015 Score=39.39 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC------CCEEEEECCCHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997089------9779997153799
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------GMSIICIANSETQ 119 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~------~~~v~~~A~t~~Q 119 (367)
.+|..|++-|.+++..+-.+. .+.+.|..|+|||.....-++-.+...+ +..+++++||...
T Consensus 47 ~g~~~pt~iQ~~aip~il~g~------------dviv~a~TGsGKTlay~lpi~~~~~~~~~~~~~~~~~~lil~pt~el 114 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVALSGL------------DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL 114 (242)
T ss_dssp TTCCSCCHHHHHHHHHHHHTC------------CEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEECCCHHH
T ss_conf 799999999999999997699------------88998279999602024611322103543334688579995685788
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999986
Q gi|254781187|r 120 LKNTLWAEVSKWLSM 134 (367)
Q Consensus 120 ~~~~lw~ei~k~~~~ 134 (367)
+..+ ..++++....
T Consensus 115 ~~q~-~~~~~~~~~~ 128 (242)
T 3fe2_A 115 AQQV-QQVAAEYCRA 128 (242)
T ss_dssp HHHH-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHHCC
T ss_conf 7768-9999997234
No 54
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0013 Score=39.73 Aligned_cols=168 Identities=15% Similarity=0.122 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 8428999999988887512455555411247761488678899999999999970-899779997153799999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEV 128 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~-~~~~~v~~~A~t~~Q~~~~lw~ei 128 (367)
.-+++|.+.+.-+.....++. .+.++-.-|.|||..+.+++.+.+.. +....++|++|.. +....-.|+
T Consensus 236 ~Lr~yQ~~gvnwl~~~~~~~~--------~~ILADemGLGKTiqai~~i~~l~~~~~~~~p~LIV~P~s--ll~qW~~E~ 305 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGD--------NGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLS--TMPAWLDTF 305 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTC--------CEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTT--THHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCC--------CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHH--HHHHHHHHH
T ss_conf 786999999999999985589--------8699856989958999999999999658899779986757--758999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCH-
Q ss_conf 9999862312112333321000123--3322111134577612662101354455652101135862899975455998-
Q gi|254781187|r 129 SKWLSMLPHRHWFEMQSLSLHPSGW--YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD- 205 (367)
Q Consensus 129 ~k~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d- 205 (367)
.+|...+..-....-...+.....+ .................++....-.... .-+......++|+|||..+.+
T Consensus 306 ~k~~p~l~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~VlIttye~l~~d~---~~l~~~~w~~vIvDEaH~lkN~ 382 (800)
T 3mwy_W 306 EKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR---AELGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp HHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH---HHHHTSEEEEEEETTGGGGCCS
T ss_pred HHHCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEECHHHHHHHH---HHHHCCCCCEEECCCCEECCCH
T ss_conf 9868997189995877888999987740351331013457898997599999879---9983277665720556045680
Q ss_pred --HHHHHHHHHHHCCCCCEEEEEEECCCCCC
Q ss_conf --89999898740698825899980789998
Q gi|254781187|r 206 --IINKSILGFFTELNPNRFWIMTSNTRRLN 234 (367)
Q Consensus 206 --~i~e~i~g~Lt~~~~~~~~i~igNP~r~~ 234 (367)
..+.++.. + ..+..++++|||-.+.
T Consensus 383 ~s~~~~~~~~-l---~~~~rllLTGTP~qn~ 409 (800)
T 3mwy_W 383 ESSLYESLNS-F---KVANRMLITGTPLQNN 409 (800)
T ss_dssp SSHHHHHHTT-S---EEEEEEEECSCCCSSC
T ss_pred HHHHHHHHHH-C---CCCCEEEECCCCCCCC
T ss_conf 2388899986-0---5362466426667687
No 55
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.24 E-value=0.0025 Score=38.02 Aligned_cols=143 Identities=13% Similarity=0.157 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999888875124555554112477614886788999999999999708997799971537999999999999999
Q gi|254781187|r 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 (367)
Q Consensus 53 ~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~ 132 (367)
+||.+..+.+....+.+... | -+.+.+..|+||++++-+++-+.+|..+...-.|- +-.. +..+..
T Consensus 5 pw~~~~~~~L~~~~~~~~l~-h----a~L~~G~~G~GK~~~a~~~a~~llc~~~~~~~~c~--~c~~-----c~~i~~-- 70 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGH-H----ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCG--HCRG-----CQLMQA-- 70 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCC-S----EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCS--CSHH-----HHHHHH--
T ss_pred CCCHHHHHHHHHHHHCCCCC-E----EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCC--CCHH-----HHHHHC--
T ss_conf 01099999999999869956-0----36358999988999999999997087998888886--6689-----999975--
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 86231211233332100012333221111345776126621013544556521011358628999754559988999989
Q gi|254781187|r 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 (367)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~ 212 (367)
...|+-+.+.... ....++.+.-....... .-.... |.. -.+|+|||.........++.
T Consensus 71 ~~hpd~~~i~~~~------------~~~~i~i~~iR~l~~~~-----~~~~~~---~~~-kiiiI~~ad~m~~~a~nalL 129 (334)
T 1a5t_A 71 GTHPDYYTLAPEK------------GKNTLGVDAVREVTEKL-----NEHARL---GGA-KVVWVTDAALLTDAAANALL 129 (334)
T ss_dssp TCCTTEEEECCCT------------TCSSBCHHHHHHHHHHT-----TSCCTT---SSC-EEEEESCGGGBCHHHHHHHH
T ss_pred CCCCCEEEECCHH------------CCCCCCHHHHHHHHHHH-----HHCCCC---CCC-EEEEECCHHHCCHHHHHHHH
T ss_conf 7999745432121------------04657899999999986-----426446---895-79997784544865689999
Q ss_pred HHHHCCCCCEEEEEEECC
Q ss_conf 874069882589998078
Q gi|254781187|r 213 GFFTELNPNRFWIMTSNT 230 (367)
Q Consensus 213 g~Lt~~~~~~~~i~igNP 230 (367)
.+|-.+....+.+++.|-
T Consensus 130 K~lEeP~~~~~fil~t~~ 147 (334)
T 1a5t_A 130 KTLEEPPAETWFFLATRE 147 (334)
T ss_dssp HHHTSCCTTEEEEEEESC
T ss_pred HHHHCCCCCCEEEEECCC
T ss_conf 998659733134320487
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.17 E-value=0.007 Score=35.30 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.++.-|.+++.+|...+..+.- | ++.|.|.-|+|||.+....++..+.. +..+++++||..=+.+. ...++
T Consensus 368 ~lT~~Q~~~~~~i~~d~~~~~~-----~-~~Llqa~TGSGKTlv~llpil~~i~~--g~q~lilaPTreLA~Q~-~~~~k 438 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKP-----M-NRLLQGDVGSGKTVVAQLAILDNYEA--GFQTAFMVPTSILAIQH-YRRTV 438 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSC-----C-CCEEECCSSSSHHHHHHHHHHHHHHH--TSCEEEECSCHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCC-----C-EEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHH-HHHHH
T ss_conf 7898899999999998618987-----5-28998178974609999999999863--89559992528999999-99998
Q ss_pred HHHHHCCC
Q ss_conf 99986231
Q gi|254781187|r 130 KWLSMLPH 137 (367)
Q Consensus 130 k~~~~~~~ 137 (367)
++...+..
T Consensus 439 ~l~~~~~i 446 (780)
T 1gm5_A 439 ESFSKFNI 446 (780)
T ss_dssp HHHTCSSC
T ss_pred HHHCCCCC
T ss_conf 76115783
No 57
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.09 E-value=0.0013 Score=39.85 Aligned_cols=67 Identities=16% Similarity=0.085 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHH
Q ss_conf 3666842899999998888751245555541124776148867889999999999997-089977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~-~~~~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|++.|.+++..+.++. .+.|.|+.|+|||.....-++-.+. ...+.++++.+|+...+....
T Consensus 39 ~g~~~~t~iQ~~ai~~il~g~------------dvlv~apTGsGKTl~~~lp~l~~~~~~~~~~~~lil~~~~~~~~~~~ 106 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPIIEGH------------DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQ 106 (394)
T ss_dssp HTCCSCCHHHHHHHHHHHHTC------------CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHH
T ss_conf 799999999999999998599------------88998999842899999999985033687752899953388888999
No 58
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.99 E-value=0.00082 Score=41.02 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf 666842899999998888751245555541124776148867889999999999997089977999715379999999
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~l 124 (367)
+|+.+++.|++++..+-++ . .+.|.++.|+|||.+...-++ . .+..+++++|+..-+.+..
T Consensus 22 G~~~~rp~Q~~aI~~iL~G----~--------Dvlv~apTGsGKTL~y~LP~l---~--~~~~~lVIsPl~~L~~qq~ 82 (523)
T 1oyw_A 22 GYQQFRPGQEEIIDTVLSG----R--------DCLVVMPTGGGKSLCYQIPAL---L--LNGLTVVVSPLISLMKDQV 82 (523)
T ss_dssp CCSSCCTTHHHHHHHHHTT----C--------CEEEECSCHHHHHHHHHHHHH---H--SSSEEEEECSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCHHHHHHHHHHH---H--CCCCEEEECCHHHHHHHHH
T ss_conf 9899998999999999839----9--------889986998469999999999---8--0996899887699999999
No 59
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.95 E-value=0.0043 Score=36.59 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=30.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
Q ss_conf 47761488678899999999999970899779997153799999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~ 122 (367)
.+.|.+.-|+|||......++.... ..+.+++|++||..=+.+
T Consensus 23 ~~vi~~~TGSGKT~~~l~~ll~~~~-~~~~rvlil~PtR~La~q 65 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKILPQIIKDAI-QQRLRTAVLAPTRVVAAE 65 (459)
T ss_dssp EEEECCCTTSCTTTTHHHHHHHHHH-HTTCCEEEEECSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-HCCCEEEEEHHHHHHHHH
T ss_conf 3899969999688999999999887-379869998679999999
No 60
>3kqn_A Serine protease/ntpase/helicase NS3; helicase-substrate transition-state complex, HCV, NS3 protein, helicase, DNA-binding; HET: ADP; 2.05A {Hepatitis c virus} PDB: 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 2zjo_A* 8ohm_A 1a1v_A* 2f55_A 1hei_A 1jr6_A 1onb_A
Probab=96.77 E-value=0.022 Score=32.24 Aligned_cols=47 Identities=21% Similarity=0.149 Sum_probs=32.9
Q ss_pred EE-EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 47-761488678899999999999970899779997153799999999999999
Q gi|254781187|r 79 KC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 (367)
Q Consensus 79 ~~-~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~ 131 (367)
++ .|.|+-|+|||..+... +...+.+++|++||..-+.++ ..++.+.
T Consensus 10 ~v~il~APTGSGKT~~~p~~-----l~~~g~rvLVl~PTReLA~Qv-~~~l~~~ 57 (437)
T 3kqn_A 10 QVAHLHAPTGSGKSTKVPAA-----YAAQGYKVLVLNPSVAATLGF-GAYMSKA 57 (437)
T ss_dssp EEEEEECCTTSSTTTHHHHH-----HHHTTCCEEEEESCHHHHHHH-HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH-----HHHCCCCEEEECCHHHHHHHH-HHHHHHH
T ss_conf 76999928998699999999-----995799499987579999999-9999998
No 61
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=96.72 E-value=0.0084 Score=34.83 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=31.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 477614886788999999999999708997799971537999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~ 123 (367)
.+.|.+.-|+|||......++.. +...+.++++++||..-+.++
T Consensus 21 ~~vl~~~TGsGKT~~~l~~il~~-~~~~~~rvLvL~PtR~La~Qv 64 (451)
T 2jlq_A 21 LTIMDLHPGAGKTKRILPSIVRE-ALLRRLRTLILAPTRVVAAEM 64 (451)
T ss_dssp EEEECCCTTSSCCTTHHHHHHHH-HHHTTCCEEEEESSHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHH-HHCCCCEEEEEHHHHHHHHHH
T ss_conf 78999589997889999999999-870798699985099999999
No 62
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.71 E-value=0.012 Score=33.98 Aligned_cols=44 Identities=16% Similarity=0.121 Sum_probs=31.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 477614886788999999999999708997799971537999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~ 123 (367)
.+.|.+.-|+|||......++..... .+.+++|++||..-+.++
T Consensus 10 ~~vl~~~TGSGKT~~~l~~ll~~~~~-~~~rvlvl~PtR~La~qv 53 (440)
T 1yks_A 10 TTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEM 53 (440)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHC-CCCEEEEEHHHHHHHHHH
T ss_conf 28999889986989999999998754-898399984299999999
No 63
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.67 E-value=0.029 Score=31.55 Aligned_cols=158 Identities=10% Similarity=0.017 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 42899999998888751245555541124776148867889999999999997089977999715379999999999999
Q gi|254781187|r 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 (367)
Q Consensus 51 p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k 130 (367)
.++=|.+++.+|-...+.+.- | ...|++--|+|||.++...++ .+...+..+++++||..-+.+. +..+++
T Consensus 604 ~t~~q~~a~~~i~~~~~~~~~-----~-~~L~~g~tGsGKT~v~~~a~~--~a~~~g~qv~il~PT~~La~Q~-~~~~~~ 674 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLA-----M-DRLVCGDVGFGKTEVAMRAAF--LAVDNHKQVAVLVPTTLLAQQH-YDNFRD 674 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSC-----C-EEEEECCCCTTTHHHHHHHHH--HHHTTTCEEEEECSSHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCH-----H-HHEEECCCCCCHHHHHHHHHH--HHHHCCCEEEEEECCHHHHHHH-HHHHHH
T ss_conf 787799999999887606855-----6-664340789866999999999--9863586489994849999999-999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 9986231211233332100012333221111345776-126621013544556521011358628999754559988999
Q gi|254781187|r 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 (367)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e 209 (367)
.....+.+-.......... +....--....| .-++.+........ +.-.+.-|+|+||+.-......+
T Consensus 675 ~~~~~~~~v~~l~~~~~~~------e~~~~l~~~~~G~i~iiigT~~~l~~~-----~~f~~Lgl~iiDE~h~f~~~~~~ 743 (1151)
T 2eyq_A 675 RFANWPVRIEMISRFRSAK------EQTQILAEVAEGKIDILIGTHKLLQSD-----VKFKDLGLLIVDEEHRFGVRHKE 743 (1151)
T ss_dssp HSTTTTCCEEEESTTSCHH------HHHHHHHHHHTTCCSEEEECTHHHHSC-----CCCSSEEEEEEESGGGSCHHHHH
T ss_pred HHHCCCCEEEEEECCCCHH------HHHHHHHHHCCCCCCEEECCHHHCCCC-----CCCCCCCEEEECHHHHHHHHHHH
T ss_conf 7511597899851776288------999999874389834474258880276-----02155673462425552198999
Q ss_pred HHHHHHHCCCCCEEEEEEECCC
Q ss_conf 9898740698825899980789
Q gi|254781187|r 210 SILGFFTELNPNRFWIMTSNTR 231 (367)
Q Consensus 210 ~i~g~Lt~~~~~~~~i~igNP~ 231 (367)
.+..... +..++ .+..+|.
T Consensus 744 ~~k~~~~--~~~~l-~~sATp~ 762 (1151)
T 2eyq_A 744 RIKAMRA--NVDIL-TLTATPI 762 (1151)
T ss_dssp HHHHHHT--TSEEE-EEESSCC
T ss_pred HHHHHCC--CCCEE-EECCCCC
T ss_conf 9985078--97588-5105687
No 64
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.59 E-value=0.033 Score=31.20 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-EEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999988887512455555411247761488678899999999999970899779-99715379999999999999998
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI-ICIANSETQLKNTLWAEVSKWLS 133 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v-~~~A~t~~Q~~~~lw~ei~k~~~ 133 (367)
|.++.+.+...++++.. | .+...++.|+|||+++-.++--..+....... .+.+...+....+. ........
T Consensus 30 ~~~~~~~L~~~~~~~~~---p---~lll~Gp~G~GKTtla~~lak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 102 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSM---P---HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKEFAR 102 (327)
T ss_dssp CHHHHHHHHHHHHHTCC---C---EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCC---C---EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHH-HHHHHHHH
T ss_conf 69999999999977999---8---69878989999999999999997640147771134454556648999-99999986
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 62312112333321000123332211113457761266210135445565210113586289997545599889999898
Q gi|254781187|r 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 (367)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g 213 (367)
. ....+....++++||+.........++..
T Consensus 103 ~--------------------------------------------------~~~~~~~~~viiide~~~~~~~~~~~Ll~ 132 (327)
T 1iqp_A 103 T--------------------------------------------------KPIGGASFKIIFLDEADALTQDAQQALRR 132 (327)
T ss_dssp S--------------------------------------------------CCGGGCSCEEEEEETGGGSCHHHHHHHHH
T ss_pred C--------------------------------------------------CCCCCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 3--------------------------------------------------12368872699986766465768999999
Q ss_pred HHHCCCCCEEEEEEECC
Q ss_conf 74069882589998078
Q gi|254781187|r 214 FFTELNPNRFWIMTSNT 230 (367)
Q Consensus 214 ~Lt~~~~~~~~i~igNP 230 (367)
.+-........+++.+.
T Consensus 133 ~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 133 TMEMFSSNVRFILSCNY 149 (327)
T ss_dssp HHHHTTTTEEEEEEESC
T ss_pred HHHCCCCCEEEEECCCC
T ss_conf 88505775145523686
No 65
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.50 E-value=0.012 Score=33.92 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 477614886788999999999999708997799971537999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~ 123 (367)
.+.|.+.-|+|||+.+...++. .+...+.++++++||..-+.++
T Consensus 188 ~tvl~aPTGSGKTt~~l~~ll~-~~~~~~~rvLVlaPTR~LA~qv 231 (618)
T 2whx_A 188 LTIMDLHPGAGKTKRILPSIVR-EALKRRLRTLILAPTRVVAAEM 231 (618)
T ss_dssp EEEECCCTTSSTTTTHHHHHHH-HHHHTTCCEEEEESSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH-HHHCCCCEEEEEHHHHHHHHHH
T ss_conf 5999958998899999999999-7355698799987999999999
No 66
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.48 E-value=0.011 Score=34.01 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=49.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHH
Q ss_conf 366684289999999888875124555554112477614886788999999999999708-9977999715379999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTL 124 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~-~~~~v~~~A~t~~Q~~~~l 124 (367)
.+|..|++.|.+++..+-++ . .+.|.|+.|+|||.+...-++-.+... ....+++++||...+.++
T Consensus 26 ~gf~~~t~iQ~~ai~~~l~g----~--------dviv~apTGsGKTl~y~lp~l~~l~~~~~~~~~~il~pt~~l~~q~- 92 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAILG----M--------DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI- 92 (391)
T ss_dssp HSCCSCCHHHHHHHHHHTTT----C--------CEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHCC----C--------CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH-
T ss_conf 79999999999999999749----9--------8899899984599999999999634157871599984789999878-
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999998623
Q gi|254781187|r 125 WAEVSKWLSMLP 136 (367)
Q Consensus 125 w~ei~k~~~~~~ 136 (367)
...+++.....+
T Consensus 93 ~~~~~~l~~~~~ 104 (391)
T 1xti_A 93 SKEYERFSKYMP 104 (391)
T ss_dssp HHHHHHHTTTCT
T ss_pred HHHHHHHHHHCC
T ss_conf 999999985378
No 67
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.47 E-value=0.022 Score=32.25 Aligned_cols=135 Identities=11% Similarity=-0.051 Sum_probs=60.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77614886788999999999999708997799971537999999999999999862312112333321000123332211
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (367)
+.|.+.-|+|||..+...++. .....+.++++++||..-+.++ .+.++..+.... .... .
T Consensus 5 tvl~~~tGSGKT~~~l~~ll~-~~~~~~~rvLvl~PtR~La~qv-----~~~L~~~~~~~~----------~~~~----~ 64 (431)
T 2v6i_A 5 TVLDLHPGAGKTRRVLPQLVR-EAVKKRLRTVILAPTRVVASEM-----YEALRGEPIRYM----------TPAV----Q 64 (431)
T ss_dssp EEEECCTTSCTTTTHHHHHHH-HHHHTTCCEEEEESSHHHHHHH-----HHHTTTSCEEEC-------------------
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHCCCCEEEEEHHHHHHHHHH-----HHHHHCCCCCEE----------EEEE----E
T ss_conf 999938984989999999999-8765798499994289999999-----999847788526----------6789----8
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH--HHHHH-CCCCCEEEEEEECCCCCCCH
Q ss_conf 1134577612662101354455652101135862899975455998899998--98740-69882589998078999876
Q gi|254781187|r 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI--LGFFT-ELNPNRFWIMTSNTRRLNGW 236 (367)
Q Consensus 160 ~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i--~g~Lt-~~~~~~~~i~igNP~r~~g~ 236 (367)
..... ...+..+...... -.-.......+..++|+|||...++...... ...+. .+..+. .++..+|+...-.
T Consensus 65 ~~~~~--~~~I~v~T~~~l~-~~l~~~~~~~~~~~IIiDEaH~~~~~~~~~~~~l~~~~~~~~~~~-i~mSAT~p~~~~~ 140 (431)
T 2v6i_A 65 SERTG--NEIVDFMCHSTFT-MKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGA-IFMTATPPGTTEA 140 (431)
T ss_dssp ----C--CCSEEEEEHHHHH-HHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEE-EEEESSCTTCCCS
T ss_pred EEECC--CCEEEEECHHHHH-HHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCEEE
T ss_conf 74159--9869997859999-998668543660589995020366416888668998642667758-9996588764566
Q ss_pred HH
Q ss_conf 88
Q gi|254781187|r 237 FY 238 (367)
Q Consensus 237 Fy 238 (367)
|.
T Consensus 141 ~~ 142 (431)
T 2v6i_A 141 FP 142 (431)
T ss_dssp SC
T ss_pred EC
T ss_conf 01
No 68
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.46 E-value=0.016 Score=33.19 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=29.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 28999754559988999989874069882589998078
Q gi|254781187|r 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 (367)
Q Consensus 193 ~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP 230 (367)
-++++||+.........++...+.........+++.|.
T Consensus 109 kiiiide~d~~~~~~q~~l~~~~e~~~~~~~~i~~~~~ 146 (323)
T 1sxj_B 109 KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp EEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 89998411111100221455401356532134430364
No 69
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.40 E-value=0.021 Score=32.41 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=30.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 289997545599889999898740698825899980789
Q gi|254781187|r 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 (367)
Q Consensus 193 ~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP~ 231 (367)
..+++|||..+......++...+.........+++.|..
T Consensus 136 kiiiide~d~l~~~~~~~L~~~le~~~~~~~~il~~n~~ 174 (354)
T 1sxj_E 136 KCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp EEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEHHHCCHH
T ss_conf 599984543222467789987533314441104430226
No 70
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.37 E-value=0.014 Score=33.48 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=51.1
Q ss_pred HHHHHHHHHCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 8888554301466888----443666842899999998888751245555541124776148867889999999999997
Q gi|254781187|r 28 FKNFVMRFFPWGIKGK----PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 (367)
Q Consensus 28 ~~~f~~~~~~w~~~~~----~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~ 103 (367)
|..|-.--|||-++=. ...+++.+|+.|.+++.++-++- .+.|.++.|.|||.+...-+ +
T Consensus 18 ~~~~~~~~fp~~~~~~~~l~~~fg~~~fRp~Q~eaI~~il~G~------------dvlv~aPTGsGKTL~y~LPa---l- 81 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGK------------EVFLVMPTGGGKSLCYQLPA---L- 81 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTC------------CEEEECCTTSCTTHHHHHHH---H-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCHHHHHHHHHH---H-
T ss_conf 9775667899879999999984799998989999999998099------------88998389856999999999---9-
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 08997799971537999999999999
Q gi|254781187|r 104 TRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 104 ~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
. .+..+++++|+..-+.+.. ..++
T Consensus 82 ~-~~~~tlVIsPl~aL~~qq~-~~l~ 105 (591)
T 2v1x_A 82 C-SDGFTLVICPLISLMEDQL-MVLK 105 (591)
T ss_dssp T-SSSEEEEECSCHHHHHHHH-HHHH
T ss_pred H-CCCCEEEECCHHHHHHHHH-HHHH
T ss_conf 6-7995999968799999999-9999
No 71
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.35 E-value=0.031 Score=31.37 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=30.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 289997545599889999898740698825899980789
Q gi|254781187|r 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 (367)
Q Consensus 193 ~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP~ 231 (367)
-.+++||+..+......++..++.........+++.|..
T Consensus 112 kviiiDe~d~l~~~~qn~Ll~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 112 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 899995532413777999999998557652664314706
No 72
>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A
Probab=96.19 E-value=0.053 Score=29.90 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=56.4
Q ss_pred HHHHHHHHCCCCCCCCHHH-HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCH
Q ss_conf 7899997523201259888-855430146688844366684289999999888875124555554112477614886788
Q gi|254781187|r 12 EQELHEMLMHAECVLSFKN-FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 (367)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~-f~~~~~~w~~~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GK 90 (367)
-++|.+.|..+++-..... ++.-+-.. ..+..+...+.-.+--.+.|..+..............-+-+.+.+..|+||
T Consensus 34 l~ele~~Ll~aDV~~~~a~~ii~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~vil~vG~nG~GK 112 (309)
T 2qy9_A 34 FEELEEQLLIADVGVETTRKIITNLTEG-ASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGK 112 (309)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH-HHHTTCCBGGGHHHHHHHHHHHHHHTTCCCCCCCSCTTEEEEEECCTTSCH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 9999999998599889999999999987-343567859999999999998741022331111468986999965766676
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999708997799971537999999999999999862
Q gi|254781187|r 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 91 S~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
|+.+|=++.|+..- -....++++.|++-+.. ..++.|.+.+
T Consensus 113 TTTiaKLA~~~~~~-~~~V~lva~Dt~R~aA~---eQL~~~a~~~ 153 (309)
T 2qy9_A 113 TTTIGKLARQFEQQ-GKSVMLAAGDTFRAAAV---EQLQVWGQRN 153 (309)
T ss_dssp HHHHHHHHHHHHTT-TCCEEEECCCTTCHHHH---HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHC-CCCCEEEECCCCCHHHH---HHHHHHHHHC
T ss_conf 55078999999856-77614864453065499---9999987524
No 73
>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.18 E-value=0.034 Score=31.13 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=29.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 77614886788999999999999708997799971537999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~ 123 (367)
+.|.+.-|+|||+.+-..++-. ....+.+++|++|+..-+.++
T Consensus 244 ~iL~APTGSGKTt~il~~Ll~~-~~~~~~rvlilaPtR~LA~qv 286 (673)
T 2wv9_A 244 TVLDLHPGAGKTRRILPQIIKD-AIQKRLRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EEECCCTTTTTTTTHHHHHHHH-HHHTTCCEEEEESSHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHH-CCCCCCEEEEEHHHHHHHHHH
T ss_conf 9999579871999999999985-403699999995899999999
No 74
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A
Probab=96.17 E-value=0.021 Score=32.39 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf 2899999998888751245555541124776148867889999999999997089977999715379999999
Q gi|254781187|r 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~l 124 (367)
..=|.++++..-. + | + ..|.+|=|+|||+.++.++. .+..+++.+|+++|||-.-+.+++
T Consensus 182 N~~Q~~AV~~al~---~------~--l-~lI~GPPGTGKT~ti~~ii~-~l~~~~~~kILv~apTN~Avd~i~ 241 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---R------P--L-SLIQGPPGTGKTVTSATIVY-HLARQGNGPVLVCAPSNIAVDQLT 241 (624)
T ss_dssp CHHHHHHHHHHHT---C------S--E-EEEECCTTSCHHHHHHHHHH-HHHTSSSCCEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHHC---C------C--C-EEEECCCCCCHHHHHHHHHH-HHHHCCCCCEEEEECCHHHHHHHH
T ss_conf 9999999999963---9------9--7-59988999983089999999-999706897999938779999999
No 75
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.11 E-value=0.061 Score=29.54 Aligned_cols=161 Identities=15% Similarity=0.068 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 8999999988887512455555411247761488678899999999999970-899779997153799999999999999
Q gi|254781187|r 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKW 131 (367)
Q Consensus 53 ~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~-~~~~~v~~~A~t~~Q~~~~lw~ei~k~ 131 (367)
....++|+.|.++. =+.|.+..|+|||+-+--+++..... ..+++|+||-|..--+..+ -..+++-
T Consensus 97 ~~~~~il~~i~~~~------------v~ii~G~TGsGKTTqvPq~ll~~~~~~~~~~~I~~tQPRRiaA~sv-A~RVa~e 163 (773)
T 2xau_A 97 AQRDEFLKLYQNNQ------------IMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSV-AQRVAEE 163 (773)
T ss_dssp GGHHHHHHHHHHCS------------EEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHCC------------EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH-HHHHHHH
T ss_conf 78999999999799------------6999849989888899999998303137998799928978999999-9999998
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCCCCEEEEECCCC--CCHHHH
Q ss_conf 986231211233332100012333221111345776126621-01354455652101135862899975455--998899
Q gi|254781187|r 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC-RTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIIN 208 (367)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~ea~~g~h~~~~~l~ivDEAsg--I~d~i~ 208 (367)
... ..+ ...++...........+...|.+. ...+....+. .+ .+...+|+||+.- +.-++.
T Consensus 164 ~~~-~lG-----------~~VGY~ir~e~~~s~~T~i~~~T~GiLLr~l~~d~--~L--~~~s~iIlDEvHERs~~tD~l 227 (773)
T 2xau_A 164 MDV-KLG-----------EEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDH--DL--SRYSCIILDEAHERTLATDIL 227 (773)
T ss_dssp TTC-CBT-----------TTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHST--TC--TTEEEEEECSGGGCCHHHHHH
T ss_pred HCC-CCC-----------CEEEEEECCCCCCCCCCEEEEECHHHHHHHHHHCC--CC--CCCCEEEECCCEECCCCHHHH
T ss_conf 499-988-----------85668955787789983699975299999985486--65--675779954520157038999
Q ss_pred -HHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHCC
Q ss_conf -998987406988258999807899987688754112
Q gi|254781187|r 209 -KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 (367)
Q Consensus 209 -e~i~g~Lt~~~~~~~~i~igNP~r~~g~Fye~~~~~ 244 (367)
-.+.-.+.. ......++. +.|-....|.+.|...
T Consensus 228 l~llk~~~~~-r~~lklIlm-SAT~d~~~f~~yf~~~ 262 (773)
T 2xau_A 228 MGLLKQVVKR-RPDLKIIIM-SATLDAEKFQRYFNDA 262 (773)
T ss_dssp HHHHHHHHHH-CTTCEEEEE-ESCSCCHHHHHHTTSC
T ss_pred HHHHHHHHHH-CCCCEEEEE-CCCCCHHHHHHHCCCC
T ss_conf 9999999985-888479994-1775478887533899
No 76
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A*
Probab=95.71 E-value=0.027 Score=31.71 Aligned_cols=40 Identities=15% Similarity=0.063 Sum_probs=30.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 4776148867889999999999997089977999715379
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~ 118 (367)
-+++.++.|+|||+.+|-++.+++........++++.|++
T Consensus 107 vI~lvGptGvGKTTtiaKLAa~~~~~~~~~v~lit~Dt~R 146 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 8999899998889999999999999579906999807997
No 77
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.69 E-value=0.017 Score=32.92 Aligned_cols=121 Identities=16% Similarity=0.101 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999988887512455555411247761488678899999999999970899779997153799999999999999986
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~ 134 (367)
|.++.+.+...++++.. | .+...++-|+|||+++-.++-...+......+.....+...-.+....++..
T Consensus 22 ~~~~~~~l~~~i~~~~~---~---~~L~~Gp~G~GKttla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 91 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNI---P---HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKE---- 91 (319)
T ss_dssp CHHHHHHHHTTTTTTCC---C---CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHH----
T ss_pred HHHHHHHHHHHHHCCCC---C---EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH----
T ss_conf 59999999999977999---8---7998897999999999999997344567876477535677763789999999----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 23121123333210001233322111134577612662101354455652101135862899975455998899998987
Q gi|254781187|r 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214 (367)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g~ 214 (367)
+ +.. .... +.....+++||+..+......++...
T Consensus 92 -----------------------------------~--~~~------~~~~---~~~~~~iiide~d~l~~~~q~~ll~~ 125 (319)
T 2chq_A 92 -----------------------------------F--ART------APIG---GAPFKIIFLDEADALTADAQAALRRT 125 (319)
T ss_dssp -----------------------------------H--HHS------CCSS---SCCCEEEEEETGGGSCHHHHHTTGGG
T ss_pred -----------------------------------H--HHH------HHCC---CCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf -----------------------------------8--874------4406---99648999725331679999999877
Q ss_pred HHCCCCCEEEEEEECCC
Q ss_conf 40698825899980789
Q gi|254781187|r 215 FTELNPNRFWIMTSNTR 231 (367)
Q Consensus 215 Lt~~~~~~~~i~igNP~ 231 (367)
+.........+++.|..
T Consensus 126 le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 126 MEMYSKSCRFILSCNYV 142 (319)
T ss_dssp TSSSSSSEEEEEEESCG
T ss_pred HHCCCCCCEECCCCCCC
T ss_conf 61278651110256850
No 78
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.54 E-value=0.11 Score=28.09 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999888875124555554112477614886788999999999999708997799971537999999999999999862
Q gi|254781187|r 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
.++++.+...+.++.. | .+.+.+..|+|||+++-.++-...+......++..-.+...-.+.+...+......
T Consensus 23 ~~~~~~l~~~i~~~~~---~---~~Ll~Gp~G~GKTtla~~iak~l~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~- 95 (226)
T 2chg_A 23 DEVIQRLKGYVERKNI---P---HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART- 95 (226)
T ss_dssp HHHHHHHHHHHHTTCC---C---CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHCCCC---C---EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHC-
T ss_conf 9999999999976999---8---59888999998899999999998435556771323467767699999999999860-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 31211233332100012333221111345776126621013544556521011358628999754559988999989874
Q gi|254781187|r 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 (367)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g~L 215 (367)
.... +....++++||+...+.....++...+
T Consensus 96 ----------------------------------------------~~~~---~~~~~~iiide~~~l~~~~q~~ll~~l 126 (226)
T 2chg_A 96 ----------------------------------------------APIG---GAPFKIIFLDEADALTADAQAALRRTM 126 (226)
T ss_dssp ----------------------------------------------CCST---TCSCEEEEEETGGGSCHHHHHHHHHHH
T ss_pred ----------------------------------------------CCCC---CCCEEEEEECCHHHCCHHHHHHHHHHH
T ss_conf ----------------------------------------------1126---986699995112016899999988876
Q ss_pred HCCCCCEEEEEEEC
Q ss_conf 06988258999807
Q gi|254781187|r 216 TELNPNRFWIMTSN 229 (367)
Q Consensus 216 t~~~~~~~~i~igN 229 (367)
.........+++.|
T Consensus 127 e~~~~~~~~i~~~~ 140 (226)
T 2chg_A 127 EMYSKSCRFILSCN 140 (226)
T ss_dssp HHTTTTEEEEEEES
T ss_pred HHCCCCCEEEECCC
T ss_conf 42776544773679
No 79
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.11 E-value=0.077 Score=28.94 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=38.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 477614886788999999999999708--99779997153799999999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKW 131 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~--~~~~v~~~A~t~~Q~~~~lw~ei~k~ 131 (367)
.+.|.||=|+|||+....-+.+++... ++.+|++++-|-+-+.++- ..+.+.
T Consensus 26 ~~lV~AgAGSGKT~~L~~ri~~Li~~~~~~p~~IL~lTFTnkAA~Em~-~Ri~~~ 79 (724)
T 1pjr_A 26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMR-ERVQSL 79 (724)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHH-HHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHH-HHHHHH
T ss_conf 989998284489999999999999809989401999953199999999-999986
No 80
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.04 E-value=0.11 Score=27.92 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=28.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 289997545599889999898740698825899980789
Q gi|254781187|r 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 (367)
Q Consensus 193 ~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP~ 231 (367)
-.+|+||+..+......++...+.........+.+.|..
T Consensus 135 kviiiDe~d~l~~~~~~~l~~~~e~~~~~~~~i~~~~~~ 173 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCC
T ss_conf 599996703068999999875203687432232214762
No 81
>2vsf_A XPD, DNA repair helicase RAD3 related protein; NER, TFIIH, hydrolase, ATP-binding, nucleotide-binding, iron sulfur cluster; HET: DNA; 2.9A {Thermoplasma acidophilum}
Probab=95.01 E-value=0.019 Score=32.72 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=37.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 477614886788999999999999708997799971537999999999999999862
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
.++|-||.|+|||...-.-++- .....+.+|++..+|..|.+.++ .|+.+....+
T Consensus 6 ~~viEApTGtGKTlayL~~al~-~~~~~~~kivi~T~T~~lq~Q~~-~el~~l~~~~ 60 (602)
T 2vsf_A 6 GVALESPTGSGKTIMALKSALQ-YSSERKLKVLYLVRTNSQEEQVI-KELRSLSSTM 60 (602)
T ss_dssp EEEECCCSSSSTTHHHHHTTCS-STTTTSCEEEEEESSHHHHHHHH-HHHHHHHTTS
T ss_pred EEEEECCCHHHHHHHHHHHHHH-HHHHCCCEEEEECCCHHHHHHHH-HHHHHHHCCC
T ss_conf 5999889738999999999999-99876990999866899999999-9998764048
No 82
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.60 E-value=0.047 Score=30.24 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=35.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHH
Q ss_conf 47761488678899999999999970--8997799971537999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLIST--RPGMSIICIANSETQLKNT 123 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~--~~~~~v~~~A~t~~Q~~~~ 123 (367)
.+.|.||=|+|||+....-+.+++.. .++.+|++++-|-+-+.++
T Consensus 17 ~~lV~AgAGSGKT~tL~~ri~~Ll~~~~~~p~~Il~lTFT~~Aa~Em 63 (673)
T 1uaa_A 17 PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREM 63 (673)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHEEEECCHHHHHHHH
T ss_conf 98999818548999999999999981898961598865559999999
No 83
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.51 E-value=0.21 Score=26.31 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=29.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 28999754559988999989874069882589998078
Q gi|254781187|r 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 (367)
Q Consensus 193 ~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP 230 (367)
-++|+|||.........++..+|-.+......+++.|.
T Consensus 121 kviiide~d~l~~~a~n~Llk~lEep~~~~~~il~t~~ 158 (373)
T 1jr3_A 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 69998683638999999999998578867389884487
No 84
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.44 E-value=0.21 Score=26.20 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899999998888751245555541124776148867889999999999997089977999715
Q gi|254781187|r 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 53 ~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
+.-..+++++++. ...++| +-+-++-|+|||+|..++.....-.+|+.+++++..
T Consensus 114 ~~A~~aa~~va~~----pg~~NP----l~IyG~~G~GKTHLL~Ai~n~~~~~~~~~~v~y~t~ 168 (440)
T 2z4s_A 114 SFAYHAALEVAKH----PGRYNP----LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp HHHHHHHHHHHHS----TTSSCC----EEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred HHHHHHHHHHHHC----CCCCCC----EEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 8999988778744----799885----799808998678999999999997299710210239
No 85
>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A*
Probab=94.38 E-value=0.059 Score=29.65 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=35.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHH
Q ss_conf 477614886788999999999999708--997799971537999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNT 123 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~--~~~~v~~~A~t~~Q~~~~ 123 (367)
.+.|.||=|+|||+....-+.+.+... ++.+|++++-|.+-+.++
T Consensus 24 ~~lV~AgAGSGKT~tL~~ri~~Li~~~~~~p~~Il~lTFT~~Aa~E~ 70 (680)
T 2is6_A 24 NLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEM 70 (680)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHH
T ss_conf 98999848648999999999999980999950398880219999999
No 86
>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: a.80.1.1 c.37.1.20
Probab=94.16 E-value=0.25 Score=25.84 Aligned_cols=111 Identities=8% Similarity=0.063 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH---HCCCCEEEEECCC-----HHHHHHHHHH
Q ss_conf 9999998888751245555541124776148867889999999999997---0899779997153-----7999999999
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS---TRPGMSIICIANS-----ETQLKNTLWA 126 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~---~~~~~~v~~~A~t-----~~Q~~~~lw~ 126 (367)
|.+.++.+...+.++. ...+...+.-|+|||.++-.++--... .||| ++++.|- -+|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~------~~~~~~~g~~g~gk~~~~~~~~~~i~~~~~~HpD--~~~i~~e~~~I~Id~IR~---- 69 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE------GISILINGEDLSYPREVSLELPEYVEKFPPKASD--VLEIDPEGENIGIDDIRT---- 69 (305)
T ss_dssp --CHHHHHHHHHHTCS------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT--EEEECCSSSCBCHHHHHH----
T ss_pred CHHHHHHHHHHHHCCC------CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC--EEEEECCCCCCCHHHHHH----
T ss_conf 6789999999997699------9749888999988799999999997365677998--898707767899899999----
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 99999986231211233332100012333221111345776126621013544556521011358628999754559988
Q gi|254781187|r 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 (367)
Q Consensus 127 ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~ 206 (367)
+.+.+...| ..| .+ -.+|+|||......
T Consensus 70 -l~~~~~~~p-----------------------------------------------~~~---~~-KVvIId~ad~lt~~ 97 (305)
T 2gno_A 70 -IKDFLNYSP-----------------------------------------------ELY---TR-KYVIVHDCERMTQQ 97 (305)
T ss_dssp -HHHHHTSCC-----------------------------------------------SSS---SS-EEEEETTGGGBCHH
T ss_pred -HHHHHHHCC-----------------------------------------------CCC---CC-EEEEEECHHHCCHH
T ss_conf -999995355-----------------------------------------------358---96-69998575542999
Q ss_pred HHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf 99998987406988258999807
Q gi|254781187|r 207 INKSILGFFTELNPNRFWIMTSN 229 (367)
Q Consensus 207 i~e~i~g~Lt~~~~~~~~i~igN 229 (367)
...+++.+|-.+-..+..++++|
T Consensus 98 AaNaLLK~LEEPp~~t~fIL~t~ 120 (305)
T 2gno_A 98 AANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp HHHHTHHHHHSCCTTEEEEEEES
T ss_pred HHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 99999999747997705875205
No 87
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.83 E-value=0.28 Score=25.45 Aligned_cols=70 Identities=19% Similarity=0.081 Sum_probs=45.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECC
Q ss_conf 88443666842899999998888751245555541124776148867889999999999997089977999-715
Q gi|254781187|r 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC-IAN 115 (367)
Q Consensus 42 ~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~-~A~ 115 (367)
+.-++.+..++.-|.+++..+.+++++-..... .-+-+.++-|+|||+++++++-..+ .+.+..+++ .++
T Consensus 120 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~gl~l~G~~G~GKT~L~~ai~~~l~-~~~~~~v~~~~~~ 190 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQ---KGLYLYGDMGIGKSYLLAAMAHELS-EKKGVSTTLLHFP 190 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSC---CEEEEECSTTSSHHHHHHHHHHHHH-HHSCCCEEEEEHH
T ss_pred CCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC---CEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEEEHH
T ss_conf 697887579998999999999999984754678---8289989999858999999999998-7579718998535
No 88
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.39 E-value=0.34 Score=25.00 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=50.3
Q ss_pred HHHCCCCCCCCH-HHHHHHHHCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHCCCCCCCC---CEEEEEEECCCCCCHH
Q ss_conf 975232012598-88855430146688844366684289999-999888875124555554---1124776148867889
Q gi|254781187|r 17 EMLMHAECVLSF-KNFVMRFFPWGIKGKPLEHFSQPHRWQLE-FMEAVDVHCHSNVNNSNP---TIFKCAISAGRGIGKT 91 (367)
Q Consensus 17 ~~~~~~~~~~~~-~~f~~~~~~w~~~~~~~~~~~~p~~wq~~-~l~~~~~~~~~~~~~~~~---~~~~~~v~sgrg~GKS 91 (367)
..|..|++-... ..|+.-+-.- ..+..+.....|.+.-.+ +.+++.+-+..+.....+ .-.-+.+.+..|+|||
T Consensus 37 ~aLLeADV~~~vv~~~~~~ik~~-~~~~~v~~~~~~~~~i~kiv~~eL~~llg~~~~~~~~~~~~p~Vi~lvG~~GvGKT 115 (504)
T 2j37_W 37 TALLEADVNIKLVKQLRENVKSA-IDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKT 115 (504)
T ss_dssp HHHCCTTTSSSTTHHHHHHHHHH-HTTCCCCSSSCHHHHHHHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 99996678899999999999999-71253667799899999999999999848665434435689759999668788865
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 99999999999708997799971537999
Q gi|254781187|r 92 TLNAWMMLWLISTRPGMSIICIANSETQL 120 (367)
Q Consensus 92 ~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~ 120 (367)
+.+|=++.|+. .+.....++++.|++-+
T Consensus 116 TT~aKLA~~~~-~~g~kv~Lva~Dt~R~a 143 (504)
T 2j37_W 116 TTCSKLAYYYQ-RKGWKTCLICADTFRAG 143 (504)
T ss_dssp HHHHHHHHHHH-HTTCCEEEEEECCSSSH
T ss_pred CCHHHHHHHHH-HHHCCCCCCCCCCCCHH
T ss_conf 50899999998-60020200001236777
No 89
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.33 E-value=0.11 Score=28.10 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=26.9
Q ss_pred EEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE-CCC
Q ss_conf 247761488-678899999999999970899779997-153
Q gi|254781187|r 78 FKCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICI-ANS 116 (367)
Q Consensus 78 ~~~~v~sgr-g~GKS~~~a~~~lw~~~~~~~~~v~~~-A~t 116 (367)
.+++|+||. |+|||++++.++.-++-. |.+|+++ +.-
T Consensus 19 ~~IaV~SgKGGvGKTT~a~NLA~aLA~~--GkkVllvD~D~ 57 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHYARQ--GKKVGILDADF 57 (262)
T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHHHHT--TCCEEEEECCS
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHC--CCEEEEECCCC
T ss_conf 6999975999887999999999999977--99257647877
No 90
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.18 E-value=0.16 Score=26.92 Aligned_cols=45 Identities=24% Similarity=0.432 Sum_probs=31.6
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEECCC-HHHHHHH
Q ss_conf 47761488-678899999999999970899779997153-7999999
Q gi|254781187|r 79 KCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIANS-ETQLKNT 123 (367)
Q Consensus 79 ~~~v~sgr-g~GKS~~~a~~~lw~~~~~~~~~v~~~A~t-~~Q~~~~ 123 (367)
|+.+.+|. |+|||++++.++..+++...|.+|+++.-- ...+.+.
T Consensus 19 r~i~~sGKGGvGKTT~a~~lA~~lalA~~G~rVLlvD~Dp~~nL~~~ 65 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDA 65 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf 59999689857299999999999999958991999948988886887
No 91
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.74 E-value=0.41 Score=24.46 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 844366684289999999888875124555554112477614-88678899999999999970899779997
Q gi|254781187|r 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 43 ~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~s-grg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
.+|.-...|..-..|.+|.+...++.......+. .++|.| .-|.|||++++.++..++.. |.+|+++
T Consensus 72 ~~~~~~~~p~s~~aEa~R~lrt~l~~~~~~~~~k--vI~VtS~~~G~GKTtva~nLA~~lA~~--GkrVLLI 139 (299)
T 3cio_A 72 IPFLAVDNPADSAVEAVRALRTSLHFAMMETENN--ILMITGATPDSGKTFVSSTLAAVIAQS--DQKVLFI 139 (299)
T ss_dssp SCCHHHHSTTCHHHHHHHHHHHHHHHHTSSCSCC--EEEEEESSSSSCHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCE--EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEE
T ss_conf 7347876999889999999999987642799985--999977999998899999999999977--9968999
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.44 E-value=0.46 Score=24.17 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=44.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 884436668428999999988887512455555411247761488678899999999999970899779997
Q gi|254781187|r 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 42 ~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
+.-|+.|....+-|.+++..+..+.++-... ....+.+.++-|+|||+++.+++-..+... +.+++.+
T Consensus 6 ~~~~dn~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~l~G~~GtGKT~La~ai~~~l~~~~-~~~~~~i 73 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPE---EGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GIRGYFF 73 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGG---GCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CCCCCEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf 7971141689978999999999999863503---597699999999988999999999988605-9636775
No 93
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.38 E-value=0.094 Score=28.41 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=29.2
Q ss_pred CEEEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE-CCC
Q ss_conf 11247761488-678899999999999970899779997-153
Q gi|254781187|r 76 TIFKCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICI-ANS 116 (367)
Q Consensus 76 ~~~~~~v~sgr-g~GKS~~~a~~~lw~~~~~~~~~v~~~-A~t 116 (367)
.|.+++|.|++ |+|||++++.++.+++.. +.+|+++ +..
T Consensus 5 ~~k~I~v~s~KGGvGKTTia~nlA~~La~~--g~~VllID~D~ 45 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARL--GKRVLLVDLDP 45 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCC
T ss_conf 876999986999876999999999999977--99889996489
No 94
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.70 E-value=0.19 Score=26.46 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=25.5
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 47761488-678899999999999970899779997
Q gi|254781187|r 79 KCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 79 ~~~v~sgr-g~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
-++|.+++ |+|||++++.++.++.. .|.+|+++
T Consensus 4 vIav~s~kGGvGKTT~a~nLA~~la~--~g~~Vlli 37 (237)
T 1g3q_A 4 IISIVSGKGGTGKTTVTANLSVALGD--RGRKVLAV 37 (237)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 99998999997099999999999997--89989999
No 95
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.52 E-value=0.59 Score=23.52 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 66842899999998888751245555541124776148-86788999999999999708997799971
Q gi|254781187|r 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 48 ~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sg-rg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
...|..-..|.++.+...++.......+. -++|.|+ .|.|||++++.++..++-. +.+|+++-
T Consensus 55 ~~~~~s~~~e~~r~l~~~l~~~~~~~~~k--vI~vtS~~~g~GKTtia~nLA~~lA~~--G~rVLlID 118 (271)
T 3bfv_A 55 HEQPKSPISEKFRGIRSNIMFANPDSAVQ--SIVITSEAPGAGKSTIAANLAVAYAQA--GYKTLIVD 118 (271)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHSSTTCCCC--EEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHHHCCCCCCE--EEEEECCCCCCCHHHHHHHHHHHHHHC--CCEEEEEE
T ss_conf 66999989999999999877634799985--999974899898899999999999976--99499993
No 96
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.22 E-value=0.63 Score=23.33 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 4366684289999999888875124555554112477614-886788999999999999708997799971
Q gi|254781187|r 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 45 ~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~s-grg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
+.....|..-..|.+|.+...++.......+.+ ++|.| .-|.|||++++.++..++ ..+.+|+++-
T Consensus 62 l~~~~~p~~~~~e~~r~lr~~l~~~~~~~~~kv--i~VtS~~~G~GKTtia~nLA~~lA--~~G~rVLLID 128 (286)
T 3la6_A 62 LLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNV--LMMTGVSPSIGMTFVCANLAAVIS--QTNKRVLLID 128 (286)
T ss_dssp CHHHHCTTCHHHHHHHHHHHHHHHHSTTTTCCE--EEEEESSSSSSHHHHHHHHHHHHH--TTTCCEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEE--EEEECCCCCCCHHHHHHHHHHHHH--HCCCEEEEEE
T ss_conf 247669998799999999999877415999818--999779999988999999999999--7799189983
No 97
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.18 E-value=0.27 Score=25.56 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=26.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CEEEEEC
Q ss_conf 247761488678899999999999970899-7799971
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPG-MSIICIA 114 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~-~~v~~~A 114 (367)
+=+.|++|-|+|||+++..++-.+....++ ..|.+++
T Consensus 32 ~iIgiaG~~GSGKSTla~~l~~~l~~~~~~~~~v~~iS 69 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYAS 69 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 89996789878899999999999997528887079963
No 98
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.97 E-value=0.46 Score=24.19 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=47.8
Q ss_pred CHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 9888855430146688844366-684289999999888875124555554112477614886788999999999999708
Q gi|254781187|r 27 SFKNFVMRFFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 (367)
Q Consensus 27 ~~~~f~~~~~~w~~~~~~~~~~-~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~ 105 (367)
+|.+..- .||-.... |+.. ..|..-..+++.-+.. +-+++ |..|.+++|+|||++...++......+
T Consensus 135 ~F~~ltp-~~P~erl~--le~~~~~~~~~~~RvID~l~P-IgkGQ--------R~lI~g~~gtGKT~Ll~~ia~~~~~~~ 202 (422)
T 3ice_A 135 LFENLTP-LHANSRLR--MERGNGSTEDLTARVLDLASP-IGRGQ--------RGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp CTTTSCE-ESCCSBCC--CCCTTCCTTHHHHHHHHHHSC-CBTTC--------EEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CCCCCCC-CCCCCCCC--CCCCCCCCCCCCCEEEEEECH-HCCCC--------EEEEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf 6577787-58976544--467999854244155655410-11697--------368863899870189999997544069
Q ss_pred CCCEEEEEC
Q ss_conf 997799971
Q gi|254781187|r 106 PGMSIICIA 114 (367)
Q Consensus 106 ~~~~v~~~A 114 (367)
+...+++..
T Consensus 203 ~~~v~~v~l 211 (422)
T 3ice_A 203 PDCVLMVLL 211 (422)
T ss_dssp TTSEEEEEE
T ss_pred CCEEEEEEE
T ss_conf 987999999
No 99
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A*
Probab=90.84 E-value=0.44 Score=24.31 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=28.7
Q ss_pred EEE-EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 477-614886788999999999999708997799971
Q gi|254781187|r 79 KCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 79 ~~~-v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
|+. +.+==|+|||++++.++..++..+.|.||+++.
T Consensus 19 r~i~~sGKGGVGKTT~a~~lA~~LA~~~~G~rVLlvD 55 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 7999979998809999999999999865899599997
No 100
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10
Probab=90.60 E-value=0.72 Score=22.97 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=34.7
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 1124776148867889999999999997089977999715379999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~ 121 (367)
..+|+.|.+.=|+|||+++..++-++..-....-++.+-|+.....
T Consensus 55 ~~~~IgItG~PGaGKSTLi~~L~~~~~~~~~~vavlavDpss~~sg 100 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTG 100 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 8528973289999899999999999861688601441688664024
No 101
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.53 E-value=0.68 Score=23.13 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=28.7
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 5411247761488678899999999999970899779997
Q gi|254781187|r 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 74 ~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
.|..+-++|.++-|+|||+++..+.--+-....+..++..
T Consensus 19 ~~~~~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~i~~ 58 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9996899988989899999999999997342898157504
No 102
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330}
Probab=90.51 E-value=0.33 Score=25.03 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=26.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 477614886788999999999999708997799971537
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~ 117 (367)
.+.|+++.|+|||++..+++-. ..+..+++++..+.
T Consensus 177 nili~G~tgSGKTTll~al~~~---ip~~~riv~iEd~~ 212 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE---IPFDQRLITIEDVP 212 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT---SCTTSCEEEEESSS
T ss_pred CEEEECCCCCCHHHHHHHHHHH---HHCCCCCEEEECCH
T ss_conf 5999899999789999999862---11034402661777
No 103
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.46 E-value=0.74 Score=22.90 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988887512455555411247761488678899999999999970899779997
Q gi|254781187|r 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
.....++.... ...| |=+.|+++-|+|||+++..+..-+-....+.+|.++
T Consensus 66 ~~~~~fl~~~~-~k~P--~IIGIaG~sgsGKSTla~~L~~lL~~~~~~~~v~li 116 (308)
T 1sq5_A 66 AVLEQFLGTNG-QRIP--YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI 116 (308)
T ss_dssp HHHHHHHTCC--CCCC--EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred HHHHHHHCCCC-CCCC--EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999846889-9996--899998999887999999999997101699965998
No 104
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A*
Probab=90.41 E-value=0.71 Score=23.01 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 99999888875124555554112477614886788999999999999708997799971537999
Q gi|254781187|r 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 (367)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~ 120 (367)
.++|..+..+ .+..+|+.|.+.=|+|||+++..++-++.......-++.+-|+....
T Consensus 66 ~~~l~~~~~~--------~~~~~rIgItG~PGaGKSTLi~~L~~~~~~~g~~VavlavDPss~~s 122 (355)
T 3p32_A 66 QQLLLRLLPD--------SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRT 122 (355)
T ss_dssp HHHHHHHGGG--------CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC------
T ss_pred HHHHHHHHHC--------CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 9999987301--------68975997428999989999999999998648865688468887421
No 105
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.95 E-value=0.82 Score=22.64 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 436668428999999988887512455555411247761488678899999999999970899779997
Q gi|254781187|r 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 45 ~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
+..|..-.+-|.++++.+..++++-.... ...-+.+.+.-|+|||+++.+++-..+ ..+..++++
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~gl~l~G~~GtGKT~La~ai~~~l~--~~~~~~~~~ 88 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGK--KMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIV 88 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSC--CCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCC--CCCEEEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEE
T ss_conf 01256698769999999999999548677--687489989998978999999999975--348828997
No 106
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=89.62 E-value=0.48 Score=24.06 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=26.1
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 47761488-6788999999999999708997799971
Q gi|254781187|r 79 KCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 79 ~~~v~sgr-g~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
-++|.|+. |+|||++++.++..+.. .+.+|+++-
T Consensus 4 vI~v~s~KGGvGKTtia~nlA~~la~--~g~kVlliD 38 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQ--LGHDVTIVD 38 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 99998999987199999999999996--899899995
No 107
>1cu1_A Protein (protease/helicase NS3); bifunctional,protease-helicase, hydrolase; 2.50A {Hepatitis c virus} SCOP: b.47.1.3 c.37.1.14 c.37.1.14
Probab=89.60 E-value=0.87 Score=22.47 Aligned_cols=127 Identities=14% Similarity=0.043 Sum_probs=60.7
Q ss_pred EEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2477614-886788999999999999708997799971537999999999999999862312112333321000123332
Q gi|254781187|r 78 FKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 (367)
Q Consensus 78 ~~~~v~s-grg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (367)
+++.|.. .-|+|||+-+--++ ...+.+++|+.|..--++ .+-.++++.+...+.. .. .+
T Consensus 211 ~qV~VL~a~TGSGKTTqVP~~L-----l~~g~kIlV~qPRRvAA~-sVA~rvae~lg~~~g~---~v---------g~-- 270 (645)
T 1cu1_A 211 FQVAHLHAPTGSGKSTKVPAAY-----AAQGYKVLVLNPSVAATL-GFGAYMSKAHGIDPNI---RT---------GV-- 270 (645)
T ss_dssp CEEEEEECCSSSSTTTHHHHHH-----HTTTCCEEEEESCHHHHH-HHHHHHHHHTSSCCEE---EC---------SS--
T ss_pred CCEEEEECCCCCCHHHHHHHHH-----HHCCCCEEEECCCHHHHH-HHHHHHHHHHCCCCCC---EE---------EE--
T ss_conf 7389997689999889999999-----977995999777689999-9999999985899762---88---------58--
Q ss_pred CCCCCCCCCCCCEEEE-ECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHH---HHHHHHHHHCCCCCEEEEEEECCCC
Q ss_conf 2111134577612662-10135445565210113586289997545599889---9998987406988258999807899
Q gi|254781187|r 157 LLEQSMGIDSKHYTIT-CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII---NKSILGFFTELNPNRFWIMTSNTRR 232 (367)
Q Consensus 157 ~~~~~~~~~~~~~~~~-a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i---~e~i~g~Lt~~~~~~~~i~igNP~r 232 (367)
+.. ..+....+.+ +.... +.. . +..+..++|+|||..-+... +-.+.-.+...+...+.++..+|+.
T Consensus 271 --~~~-t~~T~I~~~T~G~lL~-~~~---~--~L~~ysvIImDEaHERd~~SDlllGll~~~~~~~~~lkvIlMSATppg 341 (645)
T 1cu1_A 271 --RTI-TTGAPVTYSTYGKFLA-DGG---C--SGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 341 (645)
T ss_dssp --CCB-CCCCSEEEEEHHHHHH-HTS---C--CTTSCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred --EEE-CCCEEEEEECCHHHHH-CCC---C--HHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf --996-6990699988588986-473---1--005888999958601888899999999999874888279995676574
Q ss_pred C
Q ss_conf 9
Q gi|254781187|r 233 L 233 (367)
Q Consensus 233 ~ 233 (367)
.
T Consensus 342 ~ 342 (645)
T 1cu1_A 342 S 342 (645)
T ss_dssp C
T ss_pred C
T ss_conf 3
No 108
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.56 E-value=0.39 Score=24.61 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 678899999999999970899779997
Q gi|254781187|r 87 GIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 87 g~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
|+|||++++.++..++. .|.+|+++
T Consensus 18 GvGKTTvaa~lA~~lA~--~G~rVLlv 42 (589)
T 1ihu_A 18 GVGKTSISCATAIRLAE--QGKRVLLV 42 (589)
T ss_dssp TSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred CHHHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 00799999999999996--89989999
No 109
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.41 E-value=0.9 Score=22.38 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999988887512455555411247761488678899999999999970899779997
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
+.+-++.|...+.+-..........+.+.+..|+|||+++-.++- .+-...+.+.+.+
T Consensus 22 Re~e~~~l~~~l~~~~~~~~~~~~~~li~GppGtGKT~~ar~la~-~l~~~~~~~~~~v 79 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE-LYKDKTTARFVYI 79 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH-HHTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHH-HHHCCCCCCEEEE
T ss_conf 699999999999999866798888179988999969999999999-8531258976985
No 110
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A*
Probab=89.33 E-value=0.91 Score=22.35 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=26.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 1247761488678899999999999970899779997
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
-|=+.|++|-|+|||+++..+..-+.....+.+|.++
T Consensus 90 PfIIGIaG~sgSGKST~a~~L~~lL~~~~~~~~v~~i 126 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLV 126 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8899988989878999999999998530789965999
No 111
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.98 E-value=0.33 Score=25.08 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=26.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 477614886788999999999999708997799971
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
|++|++--|+|||++++.++..+. ..+.+|+++-
T Consensus 2 kIav~gKGGvGKTt~a~~lA~~la--~~g~~VlliD 35 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMA--SDYDKIYAVD 35 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHT--TTCSCEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH--HCCCCEEEEE
T ss_conf 899989882279999999999999--6899689997
No 112
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.91 E-value=0.51 Score=23.90 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=27.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 1247761488678899999999999970899779997
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
|.+++|.+==|+|||++++.++..++. .|.+|+++
T Consensus 2 Mr~IaisGKGGVGKTT~a~nLA~aLA~--~G~rVLlI 36 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE--MGKKVMIV 36 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 609999899987599999999999998--79988999
No 113
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.86 E-value=0.98 Score=22.15 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=30.2
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 411247761488678899999999999970899779997153
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t 116 (367)
+..+++.|.+.=|+|||+++..++-.+. .++.++.+++..
T Consensus 53 ~~~~~IgItG~PGaGKSTLi~~L~~~~~--~~g~kvavlavD 92 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVD 92 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEEC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEECC
T ss_conf 8825995238999889999999999974--389831123148
No 114
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 subcomplex of F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=88.81 E-value=0.99 Score=22.12 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=32.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHH
Q ss_conf 4776148867889999999999997089977999-71537999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC-IANSETQLKNT 123 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~-~A~t~~Q~~~~ 123 (367)
|+.|-+|+|+|||++...++.+-..-+.+..|++ +-...+.+.+.
T Consensus 153 r~~Ifg~~g~GKt~l~~~i~~~~~~~~~~v~V~~~iGer~rev~e~ 198 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDL 198 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHH
T ss_conf 7455558998879999999986776159879999954035999999
No 115
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.71 E-value=1 Score=22.08 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=32.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 77614886788999999999999708997799971537999999999999999862
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
+.+.+..|+|||+.+|=++.|+.. ......++++.|++-+- ...++.|.+.+
T Consensus 103 i~~vG~~G~GKTTTiaKLA~~~~~-~~~kv~lva~Dt~R~aA---~eQL~~~a~~~ 154 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAA---SDQLEIWAERT 154 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHH---HHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCCCCEECCCCCCHHH---HHHHHHHHHHC
T ss_conf 997579888677499999999997-69987321156578779---99999998642
No 116
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1
Probab=88.70 E-value=0.81 Score=22.66 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 47761488678899999999999970899779997153
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t 116 (367)
.+.|+++.|+|||++..+++. ...++.+++++..+
T Consensus 262 ~ili~G~tgSGKTT~L~all~---~i~~~~riitIEd~ 296 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM---FIPPDAKVVSIEDT 296 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG---GSCTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHH---HHHHCCCEEEEECC
T ss_conf 599989998988999999999---64540541454337
No 117
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.69 E-value=0.7 Score=23.05 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=27.0
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 1247761488678899999999999970899779997
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
|.++||..==|+|||++++.++.++.. .|.+|+++
T Consensus 1 M~~Iai~gKGGVGKTT~a~nLA~~La~--~G~rVLlI 35 (269)
T 1cp2_A 1 MRQVAIYGKGGIGKSTTTQNLTSGLHA--MGKTIMVV 35 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 979999899987699999999999997--89978999
No 118
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=88.44 E-value=0.61 Score=23.42 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=22.7
Q ss_pred EEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 7761488-67889999999999997089977999715
Q gi|254781187|r 80 CAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 80 ~~v~sgr-g~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
++|.++. |+|||++++.++.++.. .+...++=+-
T Consensus 3 I~v~s~KGGvGKTT~a~nLA~~La~--~GkVlliD~D 37 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLAL--QGETLLIDGD 37 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHT--TSCEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH--CCCEEEEECC
T ss_conf 9998299987499999999999996--8998999899
No 119
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.33 E-value=1.1 Score=21.93 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=33.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 477614886788999999999999708997799971537999999999999999862
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
-+.+.+..|+|||+.+|=++.|+.-. -....++++-|++-+- ...++.|.+.+
T Consensus 131 Vi~~vG~~G~GKTTt~aKlA~~~~~~-g~kv~l~~~Dt~R~aA---~eQL~~~a~~~ 183 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGA---IEQLEEHAKRI 183 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTH---HHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHC-CCCEEEEECCCCCHHH---HHHHHHHHHHH
T ss_conf 99997687788654389999999966-9960576323245079---99999998873
No 120
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hyperthermostable protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus HB8} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=88.16 E-value=1.1 Score=21.86 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999999708997799971537999999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~ 129 (367)
.|.-=|-+++..+.+.+++|.. ...+.+-.|+|||+++|.++-- -+..+++++++..+|.. +..+++
T Consensus 8 ~p~gdqp~aI~~L~~~l~~g~~-------~q~L~GltGS~kt~~iA~~~~~-----~~rp~LVvt~n~~~A~q-L~~el~ 74 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGER-------FVTLLGATGTGKTVTMAKVIEA-----LGRPALVLAPNKILAAQ-LAAEFR 74 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCS-------EEEEEECTTSCHHHHHHHHHHH-----HTCCEEEEESSHHHHHH-HHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCC-------CEEEECCCCCHHHHHHHHHHHH-----HCCCEEEEECCHHHHHH-HHHHHH
T ss_conf 9999749999999999966987-------5798787775899999999998-----68998999189999999-999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254781187|r 130 KWLS 133 (367)
Q Consensus 130 k~~~ 133 (367)
.++.
T Consensus 75 ~~~p 78 (664)
T 1c4o_A 75 ELFP 78 (664)
T ss_dssp HHCT
T ss_pred HHCC
T ss_conf 8668
No 121
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=87.74 E-value=0.7 Score=23.06 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999988887512455555411247761488678899999999
Q gi|254781187|r 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 57 ~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+.++.+.+.++++. -+.|.+.+|+|||+++..++
T Consensus 19 ~el~~L~~~l~~~~--------~v~i~G~~GiGKTsL~~~~~ 52 (350)
T 2qen_A 19 EESRKLEESLENYP--------LTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp HHHHHHHHHHHHCS--------EEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC--------EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999984599--------79998499997899999999
No 122
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide, SAD phasing; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=87.74 E-value=0.57 Score=23.58 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=22.7
Q ss_pred EEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 7761488-6788999999999999708997799971
Q gi|254781187|r 80 CAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 80 ~~v~sgr-g~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
++|.|+. |+|||++++.++. .+. . +.+|+++-
T Consensus 30 I~v~s~KGGVGKTT~a~nLA~-~la-~-g~rVllID 62 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILAT-LLS-K-NNKVLLID 62 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHH-HHT-T-TSCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHH-C-CCCEEEEE
T ss_conf 999899997589999999999-998-7-99889996
No 123
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.54 E-value=1.2 Score=21.68 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 477614886788999999999999708997799971537
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~ 117 (367)
++.|+++.|+|||++..+++-+ ..+..+++++..+.
T Consensus 173 nilI~G~tgSGKTTll~al~~~---i~~~~rivtIEd~~ 208 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF---IPKEERIISIEDTE 208 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG---SCTTSCEEEEESSC
T ss_pred CEEEEEECCCCHHHHHHHHHHH---CCCCCCEEECCCCH
T ss_conf 5899960799989999999732---13556433314405
No 124
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A
Probab=87.49 E-value=1.2 Score=21.61 Aligned_cols=141 Identities=14% Similarity=0.058 Sum_probs=71.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12477614886788999999999999-70899779997153799999999999999986231211233332100012333
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~-~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (367)
+++++|.+.-+.|||+++-.++..-- +.+.+ ++---....+...|..=-|.++-+... ....... |.
T Consensus 13 iRNiaiigHvd~GKTTL~e~lL~~~g~i~~~G-~v~~~~~~~~~~~D~~~~E~eRgiTI~---------s~~~~~~-~~- 80 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAG-TVKGRGSNQHAKSDWMEMEKQRGISIT---------TSVMQFP-YH- 80 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC--------------------------------CC---------TTEEEEE-ET-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-EEEECCCCCCEECCCCHHHHHCCCEEE---------ECEEEEE-EC-
T ss_conf 66799996899899999999997577100050-342035667430167288997597186---------2459998-79-
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC-CCCC
Q ss_conf 221111345776126621013544556521011358628999754559988999989874069882589998078-9998
Q gi|254781187|r 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLN 234 (367)
Q Consensus 156 ~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP-~r~~ 234 (367)
+....++.+-+-.....|...+++.-...++++|=..||....-.+++-+... +-+.+ ++-|= .|..
T Consensus 81 ---------~~~iNlIDTPGh~DF~~Ev~~al~~~DgavlVVDa~~Gv~~qT~~v~~~~~~~-~lp~i--~~INK~Dr~~ 148 (529)
T 2h5e_A 81 ---------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR-DTPIL--TFMNKLDRDI 148 (529)
T ss_dssp ---------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT-TCCEE--EEEECTTSCC
T ss_pred ---------CEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHC-CCCEE--EEEEEECCCC
T ss_conf ---------98999996988288899999999863536999646887423318888777751-78707--5444314678
Q ss_pred CHHHHHH
Q ss_conf 7688754
Q gi|254781187|r 235 GWFYDIF 241 (367)
Q Consensus 235 g~Fye~~ 241 (367)
--|.+..
T Consensus 149 ~d~~~~~ 155 (529)
T 2h5e_A 149 RDPMELL 155 (529)
T ss_dssp SCHHHHH
T ss_pred CCHHHHH
T ss_conf 8889987
No 125
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=87.46 E-value=0.41 Score=24.46 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.4
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+||++|.+..|+|||+++-.++
T Consensus 24 ~~fKI~vlG~~~vGKTSLi~rl~ 46 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 22499999957928999999998
No 126
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.46 E-value=0.44 Score=24.28 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.6
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 5411247761488678899999999
Q gi|254781187|r 74 NPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 74 ~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+..||++|.+..|+|||.++..++
T Consensus 4 ~~~l~KI~v~G~~~vGKTsli~~~~ 28 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 9846699999989989999999998
No 127
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=87.28 E-value=1.1 Score=21.82 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 59888855430146688844366684289999999888875124555554112477614886788999999999999708
Q gi|254781187|r 26 LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 (367)
Q Consensus 26 ~~~~~f~~~~~~w~~~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~ 105 (367)
-+|.+..- +||-.... |+ ..|..--.+++.-+.. +-+++ |..|.++.|+|||++...++.+...-+
T Consensus 138 ~~F~~ltp-~~P~~rl~--le--~~~~~~~~RvID~l~P-IgkGQ--------R~lIvg~~g~GKT~ll~~ia~~~~~n~ 203 (427)
T 3l0o_A 138 VNFDNLTP-DYPRERFI--LE--TDPKIYSTRLIDLFAP-IGKGQ--------RGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp CCGGGSCE-ECCCSBCC--CC--CSTTCHHHHHHHHHSC-CBTTC--------EEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCC-CCCHHHHC--CC--CCCCCCCCEEECCEEC-CCCCC--------EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 44655799-88366514--56--6766523100130303-01597--------678866888776799999999997379
Q ss_pred CCCEEEEECCCH
Q ss_conf 997799971537
Q gi|254781187|r 106 PGMSIICIANSE 117 (367)
Q Consensus 106 ~~~~v~~~A~t~ 117 (367)
+...+++..--+
T Consensus 204 ~~v~~ii~li~e 215 (427)
T 3l0o_A 204 PDTIRIILLIDE 215 (427)
T ss_dssp TTSEEEEEECSC
T ss_pred CCEEEEEEEECC
T ss_conf 970999997250
No 128
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.23 E-value=1.2 Score=21.52 Aligned_cols=123 Identities=9% Similarity=0.114 Sum_probs=63.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 477614886788999999999999708-----997799971537999999999999999862312112333321000123
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTR-----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~-----~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~~~~~~~~~~~~~~~~~ 153 (367)
++.+.+.-|+|||+++-.++--..... .+.+++-+....=.+......++...+..+...
T Consensus 45 n~lLVGepGVGKTaiV~~la~ri~~~~vp~~L~~~~i~~ld~~~LvAG~~~~G~~e~rl~~l~~e--------------- 109 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKE--------------- 109 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHH---------------
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHH---------------
T ss_conf 96685588736799999999999808999888698799960889874898365799999999999---------------
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCC---------CHHHHHHHHHHHHCCCCCEEE
Q ss_conf 33221111345776126621013544556521011358628999754559---------988999989874069882589
Q gi|254781187|r 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT---------PDIINKSILGFFTELNPNRFW 224 (367)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI---------~d~i~e~i~g~Lt~~~~~~~~ 224 (367)
-.+......+++||+..+ ...+.+.+.|.|+.+.=+ +
T Consensus 110 --------------------------------~~~~~~~iILfiDe~h~l~~~g~~~~~~~~~~~iLkp~L~~g~l~--~ 155 (187)
T 2p65_A 110 --------------------------------VQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELR--C 155 (187)
T ss_dssp --------------------------------HHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSC--E
T ss_pred --------------------------------HHHCCCCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCE--E
T ss_conf --------------------------------984658869983318988336776777266999999987079817--9
Q ss_pred EEEECCCCCCCHHHHHHHCC---CCCEEEEEEC
Q ss_conf 99807899987688754112---2350467523
Q gi|254781187|r 225 IMTSNTRRLNGWFYDIFNIP---LEDWKRYQID 254 (367)
Q Consensus 225 i~igNP~r~~g~Fye~~~~~---~~~w~~~~~~ 254 (367)
+...+|. .|.+.+.+. .+++..+++.
T Consensus 156 I~atT~e----ey~~~~e~d~al~rrF~~I~v~ 184 (187)
T 2p65_A 156 IGATTVS----EYRQFIEKDKALERRFQQILVE 184 (187)
T ss_dssp EEEECHH----HHHHHTTTCHHHHHHEEEEECC
T ss_pred EEECCHH----HHHHHHHCCHHHHHCCCEEECC
T ss_conf 9847999----9999987198999659775356
No 129
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.16 E-value=1.3 Score=21.50 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=28.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf 2899975455998899998987406988258999807
Q gi|254781187|r 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 (367)
Q Consensus 193 ~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igN 229 (367)
.++|+||+..++.....++...|-.......++++.|
T Consensus 128 kviiiDe~d~l~~~a~n~Llk~lE~~~~~~~~Il~t~ 164 (250)
T 1njg_A 128 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 7999978153999999999999862788717999669
No 130
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.03 E-value=0.48 Score=24.06 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.3
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
++||++|.+..|+|||+++..++
T Consensus 4 ~~~Ki~vlG~~~vGKTsli~~~~ 26 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 03599999999959899999998
No 131
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.00 E-value=1.3 Score=21.44 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=33.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 477614886788999999999999708997799971537999999999999999862
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
-+.+.+..|+|||+.+|=++.|+.- ......++++.|++-+- ...++.|.+.+
T Consensus 100 vi~lvG~~G~GKTTt~aKLA~~~~~-~g~kv~l~a~Dt~R~aA---~eQL~~~a~~~ 152 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAA---LEQLQQLGQQI 152 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHH---HHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEEECCCCCHHH---HHHHHHHHHHC
T ss_conf 9997467666620379999999996-79764112115654448---99999986313
No 132
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.69 E-value=0.51 Score=23.88 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.4
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4112477614886788999999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
-++||++|.+..|+|||.++..++-
T Consensus 23 d~~fKIviiG~~~vGKSSLi~~l~~ 47 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 7788999999999589999999971
No 133
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls}
Probab=86.42 E-value=0.93 Score=22.30 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=24.1
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 47761488-678899999999999970899779997
Q gi|254781187|r 79 KCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 79 ~~~v~sgr-g~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
-++|.++. |+|||++++.++..++ ...+.+|+++
T Consensus 6 iI~v~s~kGGvGkTt~a~nlA~~La-~~~~~~vlli 40 (245)
T 3ea0_A 6 VFGFVSAKGGDGGSCIAANFAFALS-QEPDIHVLAV 40 (245)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-TSTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-HHCCCCEEEE
T ss_conf 9999899997659999999999999-8689989999
No 134
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.28 E-value=0.53 Score=23.80 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 247761488678899999999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
+-++|++|-|+|||+++..+.--+
T Consensus 23 ~IIgItG~~gSGKSTla~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899988989885999999999996
No 135
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* 1e2l_A* ...
Probab=86.23 E-value=0.52 Score=23.84 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.2
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 41124776148867889999999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~lw 100 (367)
|.+-|++|-+..|+|||+++..+.-.
T Consensus 2 p~ilrI~IEG~iGsGKSTl~~~L~~~ 27 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVAL 27 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC-
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 96039999898668899999999998
No 136
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.21 E-value=1.4 Score=21.18 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=30.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-----------CCCEEEEEEECCCCCCC
Q ss_conf 8999754559988999989874069-----------88258999807899987
Q gi|254781187|r 194 AVFNDEASGTPDIINKSILGFFTEL-----------NPNRFWIMTSNTRRLNG 235 (367)
Q Consensus 194 l~ivDEAsgI~d~i~e~i~g~Lt~~-----------~~~~~~i~igNP~r~~g 235 (367)
.+++||....++.+...+...+..+ .....+++..||....|
T Consensus 112 v~~iDEi~~~~~~~~~~l~~~l~~~~v~~~~~~~~l~~~~~~~a~~Np~~~~g 164 (331)
T 2r44_A 112 FILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEG 164 (331)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSC
T ss_pred CCCCCCHHHCCHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEECCCCCCCCC
T ss_conf 53254655464123446654125407987556798078506751478766567
No 137
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.15 E-value=0.41 Score=24.51 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1124776148867889999999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~lw 100 (367)
.+.|++|.+|.++|||+++..+.-.
T Consensus 169 ~~krI~i~G~~stGKTTL~~~L~~~ 193 (365)
T 1lw7_A 169 FAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 0128999788877778999999999
No 138
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.14 E-value=1.3 Score=21.41 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 4776148867889999999999997089977999715379
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~ 118 (367)
-+.+.+..|+|||+.+|=++.++.... ...+++++.|++
T Consensus 104 vi~lvG~~G~GKTTt~aKlA~~~~~~~-~kv~li~~Dt~R 142 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNLG-KKVMFCAGDTFR 142 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTT-CCEEEECCCCSS
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCC
T ss_conf 999524667774118999999986511-540034214200
No 139
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP}
Probab=86.12 E-value=0.42 Score=24.40 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 678899999999999970899779997
Q gi|254781187|r 87 GIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 87 g~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
|+|||++++.++.+++.. |.|++++
T Consensus 12 GVGKTT~aa~lA~~lA~~--G~rvLlv 36 (374)
T 3igf_A 12 GVARTKIAIAAAKLLASQ--GKRVLLA 36 (374)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHC--CCCEEEE
T ss_conf 772999999999999978--9968999
No 140
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.03 E-value=0.57 Score=23.60 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+.||++|.+..|+|||.++..++
T Consensus 4 ~y~~KI~vlG~~~vGKSsLi~r~~ 27 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 576799999999959999999997
No 141
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.82 E-value=0.61 Score=23.44 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=19.9
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+-||++|.+..++|||.++..++
T Consensus 2 ~~~KI~v~G~~~vGKTsLi~~~~ 24 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 94199999999989999999996
No 142
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=85.63 E-value=0.63 Score=23.35 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.1
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
++||++|.+..|+|||.++-.++
T Consensus 7 ~~~Ki~vlG~~~vGKSsLi~r~~ 29 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 52689999989909899999997
No 143
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.10 E-value=0.69 Score=23.10 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.9
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
-..||++|.+..|+|||+++..++
T Consensus 8 ~~~fKI~vlG~~~vGKTSli~~~~ 31 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 157689999989969899999997
No 144
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=85.01 E-value=0.85 Score=22.53 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+.||+.|.+..|+|||.++..++
T Consensus 19 ~y~fKI~vvG~~~vGKTSLi~rl~ 42 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 616899999989979999999984
No 145
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=84.90 E-value=0.92 Score=22.33 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=31.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHH
Q ss_conf 4776148867889999999999997089977999-71537999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC-IANSETQLKNT 123 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~-~A~t~~Q~~~~ 123 (367)
|+.|-+|+|+|||+++..++.-..-.+.+..|++ +-...+.+++.
T Consensus 167 r~gIfgg~g~GKt~l~~~~~~n~~~~~~~v~V~~~iGeR~rEv~e~ 212 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDL 212 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHH
T ss_conf 7774558998878999999997887569989999964361889999
No 146
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=84.75 E-value=1.3 Score=21.35 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=28.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC-CCHHHHHHH
Q ss_conf 112477614886788999999999999708997799971-537999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA-NSETQLKNT 123 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A-~t~~Q~~~~ 123 (367)
.+.-+.+.+-=|+|||++++.++++++-. |.+|+++. .-...+.+.
T Consensus 18 ~~r~i~~~GKGGVGKTT~a~~lA~~lA~~--G~rVLlvd~DP~~sLs~~ 64 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKV--RSSVLLISTDPAHNLSDA 64 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTS--SSCEEEEECCTTCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHHH
T ss_conf 71699996998682999999999999968--991899958999767888
No 147
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=84.60 E-value=0.87 Score=22.48 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 5411247761488678899999999
Q gi|254781187|r 74 NPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 74 ~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..+.||+.|.+..|+|||.++..++
T Consensus 19 ~~~~~KIvvvG~~~vGKTsLi~~~~ 43 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 7747899999999969899988986
No 148
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell membrane, GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Probab=84.57 E-value=0.66 Score=23.19 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+.||+.|.+..|+|||.++..++
T Consensus 22 ~~fKI~viG~~~vGKTsLi~rl~ 44 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYA 44 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 46699999999928899999997
No 149
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=84.54 E-value=1.7 Score=20.70 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=33.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 477614886788999999999999708997799971537999999999999999862
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
-+.+.+..|+|||+.+|=++.|+. ..-....++++.|++-+. ...++.|.+.+
T Consensus 102 vi~~vG~~G~GKTTT~aKLA~~~~-~~g~kv~lva~Dt~R~aA---~eQL~~~a~~~ 154 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQ-KRGYKVGVVCSDTWRPGA---YHQLRQLLDRY 154 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCCSSTHH---HHHHHHHHGGG
T ss_pred EEEEECCCCCCCCCHHHHHHHHHH-HCCCCEEEEECCCCCHHH---HHHHHHHHHCC
T ss_conf 899966788972327999999999-769942465314557669---99999985124
No 150
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=84.37 E-value=0.73 Score=22.96 Aligned_cols=23 Identities=26% Similarity=0.474 Sum_probs=20.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+||++|.+..|+|||.++-.++
T Consensus 2 ~~~KIvvlG~~~vGKTSli~~~~ 24 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 08999999999968899999998
No 151
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=84.24 E-value=1.3 Score=21.44 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=26.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHH
Q ss_conf 4776148867889999999999997089977999-7153799999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC-IANSETQLKN 122 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~-~A~t~~Q~~~ 122 (367)
|+.|-+|+|+|||+++...+++-. ...+..|++ +....+.+++
T Consensus 164 r~~I~g~~g~GKt~l~~~~~~~~~-~~~~~~V~~~iGer~~ev~~ 207 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQK-GQDVICIYVAIGQKQSTVAG 207 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGG-SCSEEEEEEEESCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-CCCCEEEEEEECCCHHHHHH
T ss_conf 777556888877799999998421-57735899985542200999
No 152
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=84.14 E-value=0.79 Score=22.72 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+||++|.+..|+|||.++..++
T Consensus 12 ~~~KivviG~~~vGKTsLi~r~~ 34 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFT 34 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 36599999999969999999997
No 153
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=84.11 E-value=0.74 Score=22.90 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
||+.|.+..|+|||.++..++
T Consensus 4 ~Kv~vvG~~~vGKTsli~r~~ 24 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999979959999999997
No 154
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.08 E-value=0.76 Score=22.84 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+.+|+.|.+..|+|||.++..++
T Consensus 18 d~~~Ki~vvG~~~vGKTSLi~~~~ 41 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 737799999999978999999997
No 155
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=83.95 E-value=1.8 Score=20.54 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8999999988887512455555411247761488678899999999
Q gi|254781187|r 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 53 ~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+--...++++.....+......-...|+.+.+-.|+|||.++..++
T Consensus 17 ~~I~~y~~~~~~~~~~~~~~~~~~~~Kl~lvG~~~vGKTSLi~~L~ 62 (535)
T 3dpu_A 17 EAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLI 62 (535)
T ss_dssp HHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 9999999999998753412566788679999928988999999996
No 156
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP binding protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=83.82 E-value=0.83 Score=22.60 Aligned_cols=23 Identities=22% Similarity=0.583 Sum_probs=19.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+||++|.+..|+|||.++..++
T Consensus 3 ~~yKi~vvG~~~vGKTsLi~~~~ 25 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHH
T ss_conf 55799999999969899999996
No 157
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=83.52 E-value=0.83 Score=22.59 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=19.9
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.++|++|.+..|+|||+++..++
T Consensus 9 ~~~KI~v~G~~~vGKTsli~~l~ 31 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 67899999989949999999998
No 158
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=83.34 E-value=1 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=22.4
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 554112477614886788999999999
Q gi|254781187|r 73 SNPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 73 ~~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
.....+|+++.+..|+|||.++..++-
T Consensus 5 ~~~~~~Ki~ivG~~~vGKSsLi~~~~~ 31 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 998867999999799899999999970
No 159
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=83.32 E-value=0.85 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
-||++|.+..|+|||.++..++
T Consensus 6 ~fKi~viG~~~vGKTsli~~~~ 27 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 8999999999949999999998
No 160
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.31 E-value=1.9 Score=20.38 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=27.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 77614886788999999999999708997799971537999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~ 120 (367)
+.+.+..|+|||+.+|=++.|+.. .-....++++.|++-+
T Consensus 101 Il~vG~~G~GKTTT~aKLA~~~~~-~g~kv~lva~Dt~R~a 140 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPA 140 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSSCHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCCCCCC
T ss_conf 999667887610089999999986-3983689843556756
No 161
>2ck3_A ATP synthase alpha chain heart isoform; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=83.28 E-value=1.2 Score=21.56 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 4776148867889999999999997089
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRP 106 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~ 106 (367)
|+.|-+|+|+|||+++..++......+.
T Consensus 164 r~~i~g~~g~GKt~l~~~~i~~~~~~~~ 191 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKRFND 191 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 3445678999989999999999998525
No 162
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.27 E-value=1.6 Score=20.84 Aligned_cols=50 Identities=24% Similarity=0.165 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHCC---CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89999999888875124---555554112477614886788999999999999
Q gi|254781187|r 53 RWQLEFMEAVDVHCHSN---VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 (367)
Q Consensus 53 ~wq~~~l~~~~~~~~~~---~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~ 102 (367)
.||.+++..|++.+++- .+...-..--...+++-|+|||.++..++-.+.
T Consensus 561 ~gQ~eAI~~Ia~aI~~~raGl~~~~kP~gsfLF~GPtGvGKtelAkaLA~~lF 613 (854)
T 1qvr_A 561 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 68289999999999999617999999865899866887327999999999952
No 163
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Aquifex aeolicus VF5}
Probab=83.22 E-value=0.69 Score=23.08 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=22.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 124776148867889999999999997089977999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~ 112 (367)
|.+++|.+|=|+|||+++..+. ..|..++-
T Consensus 1 M~kIgItG~iGSGKSTv~~~l~------~~G~~vid 30 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFR------ELGAYVLD 30 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH------HTTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH------HCCCEEEE
T ss_conf 9499997999777999999999------87993998
No 164
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.15 E-value=1.2 Score=21.65 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH------HCCCCEEEEE
Q ss_conf 99999998888751245555541124776148867889999999999997------0899779997
Q gi|254781187|r 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS------TRPGMSIICI 113 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~------~~~~~~v~~~ 113 (367)
.+++.++.|+..+..-.....+ ..+.+.+..|+|||+++-.++--... ...+.+.+.+
T Consensus 24 ~re~~~~~l~~~l~~~i~~~~~--~~~li~GppG~GKTtlar~v~~~L~~~~~~~~~~~~~~~~~~ 87 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVK--FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV 87 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCC--CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 8699999999999999709998--608998799882999999999998765045456888418995
No 165
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.10 E-value=1 Score=22.11 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.1
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 555411247761488678899999999
Q gi|254781187|r 72 NSNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 72 ~~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..-...||+.|.+..|+|||.++..++
T Consensus 21 ~~~~~~fKIvvlG~~~vGKTsLi~~l~ 47 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 624589799999999959999999997
No 166
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 1ryf_A* 1ryh_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C 1ds6_A* 2qme_A* 2ov2_A* ...
Probab=83.02 E-value=0.99 Score=22.14 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.5
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
|...|++|.+..|+|||.++..++
T Consensus 3 p~~iKvvivG~~~vGKTsli~~~~ 26 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 607999999989969999999997
No 167
>1xtq_A GTP-binding protein RHEB; beta saddle, P-loop, signaling protein; HET: GDP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtr_A* 1xts_A*
Probab=82.94 E-value=0.98 Score=22.16 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=21.2
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 54112477614886788999999999
Q gi|254781187|r 74 NPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 74 ~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
.+..+|++|.+..|+|||.++..++-
T Consensus 3 ~~~~~KI~viG~~~vGKSsLi~~~~~ 28 (177)
T 1xtq_A 3 QSKSRKIAILGYRSVGKSSLTIQFVE 28 (177)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98756999999899098999999970
No 168
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=82.93 E-value=2 Score=20.29 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=24.3
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 47761488-678899999999999970899779997
Q gi|254781187|r 79 KCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 79 ~~~v~sgr-g~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
-++|.|+. |+|||++++.++..++.. +.+|+++
T Consensus 145 vI~V~S~kGGvGKTT~A~~LA~~LA~~--g~kVLli 178 (373)
T 3fkq_A 145 VVIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYL 178 (373)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC--CCEEEEE
T ss_conf 999989999951999999999999838--9959999
No 169
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=82.85 E-value=1.2 Score=21.65 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=23.0
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 5554112477614886788999999999
Q gi|254781187|r 72 NSNPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 72 ~~~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
...+...|+.|.+..|+|||.++..++-
T Consensus 4 ms~~~~iKI~viG~~~vGKTsLi~r~~~ 31 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9868668999999799788999999972
No 170
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.54 E-value=1.9 Score=20.33 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=26.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 776148867889999999999997089977999715
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
+.|++.-|+|||+++..+++-+ +...+.+|++.+.
T Consensus 38 ~vi~g~~G~GKS~~~~~la~~~-a~~~g~~vl~~s~ 72 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQW-GTAMGKKVGLAML 72 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-HHTSCCCEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHHH-HHHCCCCEEEEEE
T ss_conf 9999789974999999999999-9864787899962
No 171
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=82.50 E-value=1.8 Score=20.56 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=34.6
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC--CEEEEECCCH
Q ss_conf 555411247761488678899999999999970899--7799971537
Q gi|254781187|r 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSE 117 (367)
Q Consensus 72 ~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~--~~v~~~A~t~ 117 (367)
.++..+.-+.|++..|+|||.+.-.+++-++..+.+ .+.+.+=|+.
T Consensus 209 ~dl~k~PHlLIAG~TGSGKSv~l~siI~SLl~~~sP~ev~liLIDpK~ 256 (574)
T 2iut_A 209 TDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp EEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred EEHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC
T ss_conf 104128818997168875619999999999985895461799963662
No 172
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=82.50 E-value=0.87 Score=22.49 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=22.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 12477614886788999999999999708997799971
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
|.-+.|.++.|+|||+++..+. ..+..++-..
T Consensus 1 MkiI~l~G~~GSGKsTva~~L~------~~g~~~i~~~ 32 (179)
T 3lw7_A 1 IKVILITGMPGSGKSEFAKLLK------ERGAKVIVMS 32 (179)
T ss_dssp -CEEEEECCTTSCHHHHHHHHH------HTTCEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH------HCCCEEEECC
T ss_conf 9799998999988999999999------8799299883
No 173
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=82.44 E-value=0.96 Score=22.21 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
++||++|.+..|+|||.++..++
T Consensus 28 ~~fKivvvG~~~vGKTSLi~rl~ 50 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFK 50 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 78899999999908999999996
No 174
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=82.40 E-value=1 Score=22.05 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 112477614886788999999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
..||++|.+..|+|||+++..++-
T Consensus 7 ~~~Ki~lvG~~~vGKSsli~rl~~ 30 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 515999999799299999999961
No 175
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=82.31 E-value=2 Score=20.23 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=28.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC-CCHHHHHHHH
Q ss_conf 112477614886788999999999999708997799971-5379999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA-NSETQLKNTL 124 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A-~t~~Q~~~~l 124 (367)
.+.-+.|++==|+|||++++.++..++ ..|.+|+++- .....+.+.+
T Consensus 15 ~~r~if~sGKGGVGKTT~aanlA~~lA--~~G~rVLlvD~Dpq~~ls~~l 62 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLA--KVRRSVLLLSTDPAHNLSDAF 62 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHT--TSSSCEEEEECCSSCHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHH--HCCCCEEEEECCCCCCHHHHC
T ss_conf 856999979997719999999999999--789948999389998878871
No 176
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=82.16 E-value=1 Score=22.11 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=19.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..||+.|.+..|+|||+++..++
T Consensus 27 ~~~Ki~v~G~~~vGKTsLi~~~~ 49 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 64399999999979899999996
No 177
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A*
Probab=82.09 E-value=1 Score=22.08 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.1
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4112477614886788999999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
...||++|.+..|+|||+++..++-
T Consensus 27 ~~~fKI~ivG~~~vGKTSLi~~l~~ 51 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 7897999999999398999999972
No 178
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.07 E-value=1 Score=21.99 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=20.1
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+.-||++|.+..|+|||.++..++
T Consensus 6 ~~~~KV~vvG~~~vGKTsLi~r~~ 29 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFV 29 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 887489999969988999999996
No 179
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.05 E-value=1.5 Score=21.08 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEE
Q ss_conf 9999999888875124555554112477614886788999999999999708-99779997
Q gi|254781187|r 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICI 113 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~-~~~~v~~~ 113 (367)
.+.+-++.|...+.+......| ..+.+.++.|+|||+++..++--+..-. ++..++.+
T Consensus 24 gR~~e~~~i~~~l~~~~~~~~~--~~ili~GppGtGKT~l~~~la~~l~~~~~~~~~~i~i 82 (386)
T 2qby_A 24 HREDQIRKIASILAPLYREEKP--NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp TCHHHHHHHHHSSGGGGGTCCC--CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCC--CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8699999999999999847999--8089987998819999999999987524898528996
No 180
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ...
Probab=82.05 E-value=0.6 Score=23.46 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=19.9
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..-||++|.+..|+|||.++..++
T Consensus 13 ~~~fKIvlvG~~~vGKTsLi~~~~ 36 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 706899999999949899999997
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=82.02 E-value=2.1 Score=20.08 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8999999988887512455555411247761488678899999999
Q gi|254781187|r 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 53 ~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.++.+-|..+.+.++. ..|+++|.+.-+.|||+++-+++
T Consensus 52 ~~~~~~~~~~~~~l~~-------~~~~i~v~G~~saGKStliNall 90 (695)
T 2j69_A 52 ERDIEDITIASKNLQQ-------GVFRLLVLGDMKRGKSTFLNALI 90 (695)
T ss_dssp HHHHHHHHHHHHHHHH-------CCEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-------CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 9999999999999845-------99779997289983999999997
No 182
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=81.87 E-value=1.8 Score=20.55 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=31.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 12477614886788999999999999708997799971537999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~ 120 (367)
|.=++|.+..|+|||+++..++-.+ ...|.+|.++.+.....
T Consensus 4 mki~~I~G~~gSGKTTLi~~Li~~L--~~~G~~V~~iKh~~h~~ 45 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA--VREGWRVGTVKHHGHGG 45 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEECCC---
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHH--HHCCCEEEEEECCCCCC
T ss_conf 6599998199998999999999999--97699056774257666
No 183
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=81.84 E-value=1.9 Score=20.41 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=33.1
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC--CEEEEECCC
Q ss_conf 555411247761488678899999999999970899--779997153
Q gi|254781187|r 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANS 116 (367)
Q Consensus 72 ~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~--~~v~~~A~t 116 (367)
.+...++-+.|++..|+|||.+.-.+++-++..+++ .+.+.+=|+
T Consensus 162 ~Dl~~~PHlLIAG~TGSGKSv~l~siI~SLl~~~~P~ev~liLiDpK 208 (512)
T 2ius_A 162 ADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
T ss_conf 06755887588626788564999999999998579757379995488
No 184
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2ke5_A*
Probab=81.68 E-value=1.1 Score=21.76 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.7
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..||+.|.+..|+|||.+...++
T Consensus 3 ~~~KI~iiG~~~vGKSsli~~~~ 25 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHH
T ss_conf 61699999989988899999996
No 185
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=81.62 E-value=1.1 Score=21.85 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=21.4
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 55411247761488678899999999
Q gi|254781187|r 73 SNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 73 ~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+.+..+|++|.+..|+|||.++..++
T Consensus 20 p~~~~~KI~vvG~~~vGKTsLi~r~~ 45 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFV 45 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 87772189999979988999999997
No 186
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A*
Probab=81.56 E-value=1.3 Score=21.39 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 55411247761488678899999999
Q gi|254781187|r 73 SNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 73 ~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+..+.||++|.+.-++|||.++..++
T Consensus 11 ~~~~~~KI~vvG~~~vGKTSli~r~~ 36 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 86756799999999918999999997
No 187
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.47 E-value=2.2 Score=19.96 Aligned_cols=139 Identities=11% Similarity=0.096 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC-C----CCEEEEECCCHHHHHHHHHHHH-
Q ss_conf 999999888875124555554112477614886788999999999999708-9----9779997153799999999999-
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-P----GMSIICIANSETQLKNTLWAEV- 128 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~-~----~~~v~~~A~t~~Q~~~~lw~ei- 128 (367)
+.+-++.+..-+.+..+. ++.+.+.-|+|||+++-.++--..... | +.+++.+....=.+-...-.+.
T Consensus 27 Rd~ei~~l~~iL~r~~k~------n~lLVG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAG~~~rg~~e 100 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRRTKN------NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 100 (195)
T ss_dssp CHHHHHHHHHHHTSSSSC------EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHH
T ss_pred HHHHHHHHHHHHHCCCCC------CCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCCCEEEEEEHHHHHCCCCCCHHHH
T ss_conf 199999999998366889------91685278767489999999999807999788598689965999873688405679
Q ss_pred ---HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCC--
Q ss_conf ---999986231211233332100012333221111345776126621013544556521011358628999754559--
Q gi|254781187|r 129 ---SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-- 203 (367)
Q Consensus 129 ---~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ea~~g~h~~~~~l~ivDEAsgI-- 203 (367)
++.++.+ ..+ .....+++||...+
T Consensus 101 erl~~il~e~--------------------------------------------------~~~-~~~iILfIDeih~l~~ 129 (195)
T 1jbk_A 101 ERLKGVLNDL--------------------------------------------------AKQ-EGNVILFIDELHTMVG 129 (195)
T ss_dssp HHHHHHHHHH--------------------------------------------------HHS-TTTEEEEEETGGGGTT
T ss_pred HHHHHHHHHH--------------------------------------------------HCC-CCCEEEEECCHHHHHC
T ss_conf 9999999998--------------------------------------------------516-9978999565888613
Q ss_pred ------CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHCC---CCCEEEEEECCC
Q ss_conf ------98899998987406988258999807899987688754112---235046752333
Q gi|254781187|r 204 ------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---LEDWKRYQIDTR 256 (367)
Q Consensus 204 ------~d~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~Fye~~~~~---~~~w~~~~~~~~ 256 (367)
...+.+.+.|.|+.+.=+ ++...+|. .|.+.+.+. .+++..+.+...
T Consensus 130 ~g~~~g~~d~~~~Lkp~L~~g~l~--~IgatT~e----ey~~~~e~d~al~rrF~~I~v~ep 185 (195)
T 1jbk_A 130 AGKADGAMDAGNMLKPALARGELH--CVGATTLD----EYRQYIEKDAALERRFQKVFVAEP 185 (195)
T ss_dssp ------CCCCHHHHHHHHHTTSCC--EEEEECHH----HHHHHTTTCHHHHTTEEEEECCCC
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCE--EEECCCHH----HHHHHHHCCHHHHHHCCEEECCCC
T ss_conf 788776413899999998479832--87328999----999998718899970887346898
No 188
>2dpx_A GTP-binding protein RAD; GTPase, small-G, RGK, signal transduction, diabetes, signaling protein; HET: GDP; 1.80A {Homo sapiens} PDB: 2gjs_A*
Probab=81.17 E-value=1.2 Score=21.56 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=19.7
Q ss_pred CCEEEEEEECCCCCCHHHHHHHH
Q ss_conf 41124776148867889999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~ 97 (367)
..+||++|.+..|+|||.++..+
T Consensus 5 ~~ifKi~lvG~~~vGKSsli~~~ 27 (174)
T 2dpx_A 5 ESVYKVLLLGAPGVGKSALARIF 27 (174)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHH
T ss_conf 76889999999995899999999
No 189
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8
Probab=80.88 E-value=0.59 Score=23.52 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.++||++|.+..|+|||.++..++
T Consensus 6 ~~~~KI~vlG~~~vGKTSli~~~~ 29 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp SEEEEEEEECCCCC----------
T ss_pred CEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 546799999999938899999997
No 190
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=80.54 E-value=1.4 Score=21.12 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4112477614886788999999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
...||+.|.+..|+|||.++..++-
T Consensus 12 ~~~~KIviiG~~~vGKTsli~r~~~ 36 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 6337999999899889999999961
No 191
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=80.48 E-value=2.4 Score=19.75 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=34.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 77614886788999999999999708997799971537999999999999999862
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
+.+.+..|+|||+.+|=++.|+... .....++++.|++-+- ...++.|.+.+
T Consensus 160 Il~vG~nGvGKTTTiaKLA~~~k~~-g~kv~l~a~DTfRaaA---veQL~~~a~~~ 211 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAA---SDQLEIWAERT 211 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHH---HHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCHHH---HHHHHHHHHHC
T ss_conf 9997888886461799999999966-9986056404232769---99999998642
No 192
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 1x1r_A* 1x1s_A*
Probab=80.44 E-value=1.2 Score=21.52 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 12477614886788999999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
-||++|.+..|+|||.++..++-
T Consensus 18 ~~Ki~lvG~~~vGKTsli~r~~~ 40 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 07999999899688999999964
No 193
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=80.39 E-value=1.4 Score=21.27 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=22.2
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 554112477614886788999999999
Q gi|254781187|r 73 SNPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 73 ~~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
..|.+.|+.|-+..|+|||+++..+.-
T Consensus 45 ~~p~ilRI~IEG~iGsGKTTl~k~La~ 71 (376)
T 1of1_A 45 KMPTLLRVYIDGPHGMGKTTTTQLLVA 71 (376)
T ss_dssp -CCEEEEEEECSSTTSSHHHHHHHHHC
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 677626999989876789999999998
No 194
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=80.37 E-value=1.4 Score=21.27 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=20.2
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
-..||++|.+..|+|||.++..++
T Consensus 4 ~~~fKivvvG~~~vGKTsli~r~~ 27 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 977899999989968899999998
No 195
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21
Probab=80.24 E-value=2.5 Score=19.70 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 42899999998888751245555541124776148867889999999999
Q gi|254781187|r 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 51 p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw 100 (367)
+..++..+.+.+....+.......|.. +.+.++-|+|||+++..++--
T Consensus 9 ~~~~~~~l~~~l~~~~~~~~~~~~P~~--ill~GppGsGKT~la~~la~~ 56 (287)
T 1gvn_B 9 DKQFENRLNDNLEELIQGKKAVESPTA--FLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSSCEE--EEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEE--EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999998648767899989--998898976589999999998
No 196
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophilin-4, GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=80.19 E-value=1.4 Score=21.24 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.4
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+.+|++|.+..++|||+++..++
T Consensus 10 ~l~KivvvG~~~vGKTsLi~~~~ 32 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 89899999999978899999997
No 197
>1yzq_A Small GTP binding protein RAB6 isoform; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.78A {Homo sapiens} SCOP: c.37.1.8 PDB: 3cwz_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=80.09 E-value=1.1 Score=21.76 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2477614886788999999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~l 99 (367)
||++|.+-.|+|||.++..++-
T Consensus 7 ~KI~vvG~~~vGKSsLi~~~~~ 28 (170)
T 1yzq_A 7 FKLVFLGEQSVGKTSLITRFMY 28 (170)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999999499799999999983
No 198
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluorescence, membrane, disease mutation, golgi stack, GTP- binding; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=80.02 E-value=1.2 Score=21.54 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=18.7
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
||++|.+..|+|||.+...++
T Consensus 4 ~Kv~liG~~~vGKTSll~~l~ 24 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 699999999979999999997
No 199
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=79.95 E-value=1.2 Score=21.58 Aligned_cols=62 Identities=10% Similarity=-0.007 Sum_probs=33.2
Q ss_pred CCCCEEEEECCCCCC---HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCEEEEEECC
Q ss_conf 586289997545599---889999898740698825899980789998768875411223504675233
Q gi|254781187|r 190 THGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 (367)
Q Consensus 190 ~~~~l~ivDEAsgI~---d~i~e~i~g~Lt~~~~~~~~i~igNP~r~~g~Fye~~~~~~~~w~~~~~~~ 255 (367)
....++++||..... ......+...+....... +. ..+......+.+.+.. ......+.++.
T Consensus 98 ~~~~~~iiDe~~~~~~~~~~~~~~l~~~l~~~~~~~--~~-~~~~~~~~~~~~~i~~-~~~~~i~~lt~ 162 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNV--VA-TIPIRDVHPLVKEIRR-LPGAVLIELTP 162 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEE--EE-ECCSSCCSHHHHHHHT-CTTCEEEECCT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEE--EE-EEECHHHHHHHHHHHH-CCCCEEEEECC
T ss_conf 698378721777731443566788888876268189--99-9624488999756453-05989999788
No 200
>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20
Probab=79.87 E-value=2.1 Score=20.17 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+.|.+.+|+|||.++..++
T Consensus 32 ~vli~G~~GiGKTsLl~~~~ 51 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79998399998999999999
No 201
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.61 E-value=2.6 Score=19.57 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 89999999888875124555554112477614886788999999999999708997799971
Q gi|254781187|r 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 53 ~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
.-|.+.++.+....+. -+.|++.-|+|||+..+.++-+. -.+..+|+.+.
T Consensus 153 ~~~~~~l~~~~~~~~G----------lilisGpTGSGKSTTl~a~l~~i--~~~~r~IiTiE 202 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHG----------IILVTGPTGSGKSTTLYAGLQEL--NSSERNILTVE 202 (418)
T ss_dssp HHHHHHHHHHHTSSSE----------EEEEECSTTSCHHHHHHHHHHHH--CCTTSCEEEEE
T ss_pred HHHHHHHHHHHHCCCC----------EEEEECCCCCCCHHHHHHHHHHH--CCCCCEEEEEE
T ss_conf 7899999999856897----------79996799886417899998775--06983599970
No 202
>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli}
Probab=79.44 E-value=2.4 Score=19.77 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=30.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE-EECCCH-----HHHHH
Q ss_conf 477614886788999999999999708997799-971537-----99999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSII-CIANSE-----TQLKN 122 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~-~~A~t~-----~Q~~~ 122 (367)
-+.+.+-.|+|||+.+|=++.|+...+ +.+|+ +++-|+ .|++.
T Consensus 101 VIm~VGvnGsGKTTTiaKLA~~~k~k~-~kkVllva~DTfR~AA~eQLk~ 149 (430)
T 2j28_9 101 VVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADVYRPAAIKQLET 149 (430)
T ss_dssp EEEEECSSSSSSTTTHHHHHHHHHTSS-SCCCCBCCCCCSSSCSHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHH
T ss_conf 999975689985542999999999947-9858999557555158999999
No 203
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=79.38 E-value=1.5 Score=21.04 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 541124776148867889999999999
Q gi|254781187|r 74 NPTIFKCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 74 ~~~~~~~~v~sgrg~GKS~~~a~~~lw 100 (367)
.+.+.|++|-+..|+|||+++..+.-.
T Consensus 4 m~~~lrI~IEG~iGsGKTTl~~~L~~~ 30 (334)
T 1p6x_A 4 MVTIVRIYLDGVYGIGKSTTGRVMASA 30 (334)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 774489999888778899999999998
No 204
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=79.28 E-value=1.2 Score=21.57 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.3
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..++|+.|.+..|+|||.++..++
T Consensus 24 ~~~~KIvvlG~~~vGKTSli~rl~ 47 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHC
T ss_pred CEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 248899999999979999999995
No 205
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=79.16 E-value=2 Score=20.23 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=25.1
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 411247761488678899999999999970899779997
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
..| |+.|.++-|+|||+++..+.-.+ +...+.+
T Consensus 19 ~~m-~I~i~G~pGsGKsT~a~~Lak~l-----~~~~i~~ 51 (201)
T 2cdn_A 19 SHM-RVLLLGPPGAGKGTQAVKLAEKL-----GIPQIST 51 (201)
T ss_dssp SCC-EEEEECCTTSSHHHHHHHHHHHH-----TCCEEEH
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHHH-----CCCEECC
T ss_conf 974-79998999999899999999997-----9927746
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=79.09 E-value=1.6 Score=20.86 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8884436668428999999988887512455555411247761488678899999999
Q gi|254781187|r 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 41 ~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
...||++.-|-+.--..+-+. . ......|.+.|.+..|+|||+++-.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~ILvvG~tGsGKST~iNsL~ 63 (427)
T 2qag_B 15 RTVPLAGHVGFDSLPDQLVNK---S------VSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp --CCCCCCC-CC--CHHHHHH---S------CC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred CEEECCCCCCCCCCHHHHHHH---H------HHCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 332046731514448889999---9------626875799998899997999999984
No 207
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=79.08 E-value=1.6 Score=20.89 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.3
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
|..+|++|.+..|+|||.++..++
T Consensus 19 ~~~~Ki~viG~~~vGKTSli~~~~ 42 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 877999999989988999999997
No 208
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, cell cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=79.05 E-value=1.2 Score=21.70 Aligned_cols=23 Identities=26% Similarity=0.389 Sum_probs=19.9
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.-|.+.|.+..|+|||+++-.++
T Consensus 17 ~~fnIlVvG~~g~GKSTliN~L~ 39 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 85499998799791999999986
No 209
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A*
Probab=78.74 E-value=2.8 Score=19.41 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 477614886788999999999999708997799971
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
-+.|+++.|+|||+..+.++-+.... .+.+++.+.
T Consensus 138 lilv~GpTGSGKTTtl~a~l~~~~~~-~~~~iitiE 172 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIE 172 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCC-CCCCEEEEC
T ss_conf 59998799974899999999984133-664258853
No 210
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=78.72 E-value=1.9 Score=20.45 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=36.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4776148867889999999999997089977999715379999999999999998623
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~ 136 (367)
++|=. ..|=|||-++++.+.-.+++..+.- +||+|.+=--||. ......++.+-
T Consensus 90 ~iaEm-~TGEGKTLva~l~a~l~AL~G~~Vh-vvT~NdYLA~RD~--e~~~~iy~~lG 143 (853)
T 2fsf_A 90 CIAEM-RTGEGKTLTATLPAYLNALTGKGVH-VVTVNDYLAQRDA--ENNRPLFEFLG 143 (853)
T ss_dssp EEEEC-CTTSCHHHHHHHHHHHHHTTSSCCE-EEESSHHHHHHHH--HHHHHHHHHTT
T ss_pred CEEEE-ECCCCHHHHHHHHHHHHHHCCCCEE-EEECCHHHHHHHH--HHHHHHHHHHC
T ss_conf 65775-3789699999999999982799839-9966888869769--99999999819
No 211
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=78.69 E-value=1.5 Score=20.97 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
||++|.+..|+|||.++..++
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~ 24 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 699999989939999999996
No 212
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=78.66 E-value=2 Score=20.28 Aligned_cols=39 Identities=15% Similarity=0.027 Sum_probs=27.5
Q ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 55555411247761488678899999999999970899779997
Q gi|254781187|r 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 70 ~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
+....+....+.|.++.|+|||+.+..++-- .+...+.+
T Consensus 8 ~~~~~~~~~iI~i~G~pGSGKsT~ak~La~~-----~g~~~i~~ 46 (203)
T 1ukz_A 8 PAFSPDQVSVIFVLGGPGAGKGTQCEKLVKD-----YSFVHLSA 46 (203)
T ss_dssp CCSCTTTCEEEEEECSTTSSHHHHHHHHHHH-----SSCEEEEH
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHH-----HCCCEECH
T ss_conf 9889999838999899999879999999999-----59926438
No 213
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=78.65 E-value=1.7 Score=20.77 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
...||++|.+..|+|||.++-.++
T Consensus 18 ~~l~Kv~lvG~~~vGKTsLi~rl~ 41 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 866899999999909999999997
No 214
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=78.63 E-value=1.3 Score=21.39 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 1247761488678899999999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
++++.+.+.-|+|||+++..++--+
T Consensus 11 ~pnI~i~G~pG~GKTTiak~La~~l 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8957998999988899999999996
No 215
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=78.61 E-value=1.5 Score=20.98 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=20.9
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 112477614886788999999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
..||+.|.+..|+|||.++..++-
T Consensus 6 ~~~KI~vvG~~~vGKTsLi~r~~~ 29 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 716999999999488999999971
No 216
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=78.59 E-value=1.5 Score=20.94 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 247761488678899999999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
+-++|.+|-|+|||+++..+.--+
T Consensus 26 ~IIgI~G~~gSGKSTla~~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899988989888999999999985
No 217
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=78.58 E-value=1.4 Score=21.30 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=18.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.||++|.+..++|||.++-.++
T Consensus 16 ~~Ki~vvG~~~vGKSsLi~~~~ 37 (211)
T 3bbp_A 16 KFKLVFLGEQSVGKTSLITRFM 37 (211)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 1799999959979999999997
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus P2} PDB: 1qzx_A 1qzw_A
Probab=78.55 E-value=2.8 Score=19.37 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=34.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 477614886788999999999999708997799971537999999999999999862
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
-+.+.+..|+|||+.+|=++.|+. ..-....++++.|++-+. ...++.|.+.+
T Consensus 99 Vi~lvG~~G~GKTTTiaKLA~~~~-~~g~kV~lva~DtyR~aA---~eQL~~~a~~~ 151 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAADVYRPAA---YDQLLQLGNQI 151 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCSCHHH---HHHHHHHHHTT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHH-HCCCEEEEEECCCCCCCH---HHHHHHHHHCC
T ss_conf 999974788870134999999998-659815898447756677---99999987247
No 219
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* 3hr7_A
Probab=78.51 E-value=1.4 Score=21.15 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=22.5
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 5411247761488678899999999999
Q gi|254781187|r 74 NPTIFKCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 74 ~~~~~~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
+--|.++.+.+..|+|||+++..++--+
T Consensus 4 ~~~Mk~IiliG~~GsGKSTvak~La~~l 31 (168)
T 1zuh_A 4 HHHMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp ----CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3366759998999998999999999996
No 220
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=78.51 E-value=2.8 Score=19.36 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999988887512455555411247761488678899999999
Q gi|254781187|r 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 57 ~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+++..|.+-+++-.....-..++++|.+....|||+++-+++
T Consensus 6 ~~~~~l~d~l~~~g~~~~~~~P~IvVvG~~s~GKSsliNall 47 (299)
T 2aka_B 6 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp HHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 999999999996477888888879998799997999999996
No 221
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=78.23 E-value=2.9 Score=19.31 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=24.1
Q ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 477614-8867889999999999997089977999715
Q gi|254781187|r 79 KCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 79 ~~~v~s-grg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
|+-|.+ |.|+|||++++.++.-+.- .|.+|.+.=+
T Consensus 3 ~~~Itgt~~GVGKTtvs~~La~~La~--~G~rV~~~d~ 38 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKA--AGYRTAGYKP 38 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHH--TTCCEEEECS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEECC
T ss_conf 29999899997599999999999997--7994999886
No 222
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=77.98 E-value=2.8 Score=19.33 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1247761488678899999999999970
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLIST 104 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~ 104 (367)
-.||.|.++..+|||+++-.++-+.+-.
T Consensus 138 GPRVLV~Gp~~sGKSTl~r~L~Nyalr~ 165 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYALKF 165 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9889998998879899999999999852
No 223
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=77.93 E-value=1.6 Score=20.78 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=18.7
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+|++|.+..|+|||.++..++
T Consensus 7 ~Ki~vvG~~~vGKSSli~~~~ 27 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999979968999999998
No 224
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=77.48 E-value=1.6 Score=20.81 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+|++|.+..|+|||.++-.++
T Consensus 23 ~~KI~vvG~~~vGKTSLi~~~~ 44 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 7799999989989999999997
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii}
Probab=77.41 E-value=3 Score=19.17 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=27.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 4776148867889999999999997089977999715379
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~ 118 (367)
-+.+.+-.|+|||+.+|=++.|+.--. ....++++.|++
T Consensus 101 VIllvGl~GsGKTTT~aKLA~~l~~~g-~kv~lvaaDt~R 139 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRG-LKPALIAADTYR 139 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHH-CCEEEECCSCCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCH
T ss_conf 999857987762148999999999779-974244210336
No 226
>2ck3_D ATP synthase beta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_E* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=77.31 E-value=3 Score=19.15 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=27.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHH
Q ss_conf 4776148867889999999999997089977999-71537999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC-IANSETQLKNT 123 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~-~A~t~~Q~~~~ 123 (367)
|+.|-+|+|+|||++...++.-....+.+..|++ +-...+.+.+.
T Consensus 155 r~~Ifg~~G~GKt~l~~~~~~n~~~~~~~v~V~~~iGer~rev~e~ 200 (482)
T 2ck3_D 155 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 200 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHH
T ss_conf 7677668999889999999986765079989999972154899999
No 227
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=77.29 E-value=2.1 Score=20.12 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=22.2
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 555411247761488678899999999
Q gi|254781187|r 72 NSNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 72 ~~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+.+..+|+.|.+..++|||.++..++
T Consensus 13 ~~~~~~iKiviiG~~~vGKTsli~r~~ 39 (194)
T 2atx_A 13 GPGALMLKCVVVGDGAVGKTCLLMSYA 39 (194)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 998738999999999979999999996
No 228
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=77.25 E-value=2 Score=20.23 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=19.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..+|++|.+..|+|||.++..+.
T Consensus 14 ~~~KI~v~G~~~vGKTsli~~~~ 36 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 61279999999969899999997
No 229
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=77.03 E-value=3.1 Score=19.10 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=25.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 24776148867889999999999997089977999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~ 112 (367)
+-++|.+|-|+|||+++..+.--+-.......++.
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~ 57 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 89998898988999999999998352477602201
No 230
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=76.74 E-value=1.9 Score=20.42 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.0
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
-||++|.+-.|+|||.++..++
T Consensus 21 e~KI~vlG~~~vGKTSLi~~~~ 42 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 5699999999919999999997
No 231
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=76.54 E-value=2.1 Score=20.17 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.1
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.++|+.|.+..|+|||+++..++
T Consensus 7 ~~~Ki~viG~~~vGKSsli~~~~ 29 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHH
T ss_conf 57899999989959899999997
No 232
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=76.47 E-value=2.1 Score=20.19 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=19.7
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+++|++|.+..|+|||.++..++
T Consensus 24 ~~iKI~ivG~~~vGKTsLi~rl~ 46 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYT 46 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHHHHH
T ss_conf 78799999979979899999996
No 233
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=76.16 E-value=1.2 Score=21.64 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHH
Q ss_conf 1124776148867889999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~ 97 (367)
.+||++|.+..|+|||.++..+
T Consensus 22 ~~~Ki~viG~~~vGKSsLi~~~ 43 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHH
T ss_conf 5079999989997999999999
No 234
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Probab=76.05 E-value=2.4 Score=19.75 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=20.2
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 5411247761488678899999999
Q gi|254781187|r 74 NPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 74 ~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+..-+|++|.+..|+|||.++..++
T Consensus 17 q~~~~KI~vvG~~~vGKTsLi~r~~ 41 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6996799999959987899999998
No 235
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=76.03 E-value=2.4 Score=19.82 Aligned_cols=25 Identities=20% Similarity=0.025 Sum_probs=20.5
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 4112477614886788999999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
+...|+.|.+..|+|||.++..++-
T Consensus 23 ~~~~KIlviG~~~vGKSSLi~r~~~ 47 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 5541899999999789999999971
No 236
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=75.94 E-value=2 Score=20.23 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=27.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 124776148867889999999999997089977999715379999999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~e 127 (367)
|..+++.+|=|+|||+++..+.-. .+..++ .+.+.++..+...
T Consensus 1 M~iIgltG~~gSGKsTva~~L~e~-----~g~~~i---~~ad~~~~~~~~~ 43 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSN-----YSAVKY---QLAGPIKDALAYA 43 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH-----SCEEEC---CTTHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-----CCCEEE---CCHHHHHHHHHHH
T ss_conf 979997799988899999999997-----599798---8419999999998
No 237
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=75.70 E-value=1.7 Score=20.66 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=18.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+|++|.+..|+|||.++..++
T Consensus 7 ~~ki~vvG~~~vGKTsli~r~~ 28 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 4699999989988999999997
No 238
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=75.56 E-value=2.9 Score=19.28 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99999888875124555554112477614886788999999999
Q gi|254781187|r 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
.+-+..+.+..++ ........+++.|.+..++|||.++..++-
T Consensus 135 l~~~~~~~~~~~~-~~~~~~~~~~~~v~G~~~vGKTsLi~r~~~ 177 (332)
T 2wkq_A 135 REGVMLIKKTAEN-IDEAAKELIKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp HHHHHHHHHHHHH-HHHHHTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHCCCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 8766421232321-233214566149989899058999999963
No 239
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=75.43 E-value=2.1 Score=20.14 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=19.7
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 112477614886788999999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
..+|++|.+..|+|||.++..++-
T Consensus 11 ~~~Ki~vvG~~~vGKTsLi~~~~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 075999999899689999999985
No 240
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural genomics, NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii OT3}
Probab=75.35 E-value=3.4 Score=18.83 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999988887512455555411247761488678899999999
Q gi|254781187|r 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 57 ~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+.|+.+.+++++... ..++.+.++|.+.-++|||+++..+.
T Consensus 148 ~~l~~~r~~l~~~~~-i~~~~~~V~i~G~pnvGKSSLin~l~ 188 (357)
T 2e87_A 148 RYLNKAREVLKDLPV-VDLEIPTVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp HHHHHHHHHGGGSCC-CCSSSCEEEEECSTTSSHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCC-CCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 999999999972754-47889889998999971515999983
No 241
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=75.29 E-value=2.1 Score=20.07 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+|++|.+..++|||.++..++
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~~~ 27 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999989979899999998
No 242
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=75.27 E-value=3.4 Score=18.81 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.0
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.++++.+..|+|||++...+.
T Consensus 49 p~V~ivG~~n~GKTSLl~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 689999999999899999995
No 243
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=75.27 E-value=2.2 Score=19.97 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=20.5
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 5411247761488678899999999
Q gi|254781187|r 74 NPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 74 ~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+.++|+.|.+..|+|||.++..++
T Consensus 25 ~~~~~KIviiGd~~vGKTsLi~r~~ 49 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 7844799999989978999999997
No 244
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=75.03 E-value=3.5 Score=18.78 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
.+.|.+..|+|||+++..++--+
T Consensus 46 ~lli~GppGtGKT~l~~~l~~~l 68 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 36998799880999999999997
No 245
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=74.91 E-value=2.1 Score=20.14 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
-|++|.+..|+|||+++..++
T Consensus 4 iKv~ilG~~~vGKSsLi~~l~ 24 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 999999999909899999996
No 246
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=74.83 E-value=1.5 Score=20.98 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999998888751245555541124776148867889999999999
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw 100 (367)
|.++++.+...++.......+ ...+.+.++-|+|||+++-.++--
T Consensus 17 q~~~~~~l~~~l~~~~~~~~~-~~~iLl~GPpG~GKTtlA~~iA~~ 61 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEP-LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSC-CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCC-CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 899999999999988734899-985999897995199999999998
No 247
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A*
Probab=74.80 E-value=2.5 Score=19.69 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=25.3
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 988887512455555411247761488678899999999
Q gi|254781187|r 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..|.+-+++......-..++++|.+.-..|||+++-+++
T Consensus 9 ~~~~d~~~~l~~~~~~~~p~I~VvG~~ssGKSTlINaLl 47 (341)
T 2x2e_A 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFV 47 (341)
T ss_dssp HHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTT
T ss_pred HHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 999999997278888888869998489997999999995
No 248
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=74.58 E-value=3.6 Score=18.71 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=32.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 776148867889999999999997089977999715379999999999999998
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~ 133 (367)
+.+.+..|+|||+.+|=++.++.... ....++++.|++-+-. ..++.|.+
T Consensus 108 illvG~~G~GKTTTiaKLA~~~~~~g-~kV~lva~Dt~R~aA~---eQL~~~a~ 157 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELG-YKVLIAAADTFRAGAT---QQLEEWIK 157 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT-CCEEEEECCCSCHHHH---HHHHHHHT
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCC-CCCEEEECHHHHHHHH---HHHHHHHH
T ss_conf 99977878870528999999998739-9740333121108899---99999987
No 249
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=74.17 E-value=2.3 Score=19.93 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4776148867889999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw 100 (367)
.++|.++-|+|||+++..++--
T Consensus 8 iI~i~G~pGsGKsTia~~Lae~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899999889999999999
No 250
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=74.08 E-value=3 Score=19.19 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=19.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 112477614886788999999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
..+=++|.++-|+|||+++..+.-
T Consensus 20 k~~iI~I~G~~GSGKTTla~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 839999989898859999999999
No 251
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=73.64 E-value=2.6 Score=19.56 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4776148867889999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw 100 (367)
-+.|.++-|+|||+++-.+.--
T Consensus 13 II~ItG~~GSGKsTva~~L~e~ 34 (202)
T 3ch4_B 13 VLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9998897999999999999997
No 252
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=73.54 E-value=3.8 Score=18.55 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 84289999999888875124555554112477614886788999999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
+....+..+.+.|. .+.++........ -+.+.++-|+|||+++..++-
T Consensus 7 ~~~~~~~~~~~~~~-~~~~~~~~~~~P~-~ill~GpPGsGKTtlak~la~ 54 (253)
T 2p5t_B 7 TDSEFKHALARNLR-SLTRGKKSSKQPI-AILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CHHHHHHHHHHHHH-HHHTTCCCCSSCE-EEEEESCGGGTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HHHHCCCCCCCCE-EEEEECCCCCCHHHHHHHHHH
T ss_conf 89999999999999-9982632567987-999889999888999999999
No 253
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=73.42 E-value=3.8 Score=18.53 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=52.5
Q ss_pred HHHHHHHCCCCCCCCH-HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCEEEEEEECCCCCCH
Q ss_conf 8999975232012598-8885543014668884436668428999999988887512-4555554112477614886788
Q gi|254781187|r 13 QELHEMLMHAECVLSF-KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS-NVNNSNPTIFKCAISAGRGIGK 90 (367)
Q Consensus 13 ~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~~~~~~~~~~p~~wq~~~l~~~~~~~~~-~~~~~~~~~~~~~v~sgrg~GK 90 (367)
++|.+.|..+++-..- ..|...+= +. .....+.-.+.+..+-..... ......|. -+++.+..|+||
T Consensus 49 ~el~~~Li~aDV~~~~~~~ii~~l~---~~------~~~~~~~l~~~~~~~l~~~~~l~~~~~~p~--vi~~vG~~G~GK 117 (306)
T 1vma_A 49 EELEELLIQADVGVETTEYILERLE---EK------DGDALESLKEIILEILNFDTKLNVPPEPPF--VIMVVGVNGTGK 117 (306)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHT---TC------CSCHHHHHHHHHHHHTCSCCCCCCCSSSCE--EEEEECCTTSSH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH---HH------HHHHHHHHHHHHHHHHCCCCCHHCCCCCCE--EEEEECCCCCCC
T ss_conf 9999999986998899999999998---76------688999999999998532331001678996--999977888984
Q ss_pred HHHHHHHHHHHHHHCCCCEE-EEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999970899779-9971537999999999999999862
Q gi|254781187|r 91 TTLNAWMMLWLISTRPGMSI-ICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 91 S~~~a~~~lw~~~~~~~~~v-~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
|+.+|=++.|+.. + +.+| ++++-|++-+. ...++.|.+.+
T Consensus 118 TTT~aKLA~~~~~-~-~~kv~lv~~Dt~R~aA---~eQL~~~a~~~ 158 (306)
T 1vma_A 118 TTSCGKLAKMFVD-E-GKSVVLAAADTFRAAA---IEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHHHHH-T-TCCEEEEEECTTCHHH---HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-C-CCEEEEEECCCCCHHH---HHHHHHHHHCC
T ss_conf 3159999999985-7-9848998435667779---99999988514
No 254
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP- binding, coiled coil, cytoplasm, disease mutation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=73.17 E-value=1.9 Score=20.37 Aligned_cols=21 Identities=38% Similarity=0.389 Sum_probs=18.0
Q ss_pred EEEEEEECCCCCCHHHHHHHH
Q ss_conf 124776148867889999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~ 97 (367)
++|+.|.+..|+|||.++..+
T Consensus 2 r~KivivG~~~~GKTsli~~~ 22 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQL 22 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
T ss_conf 759999993996889999999
No 255
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=73.16 E-value=3.9 Score=18.49 Aligned_cols=53 Identities=13% Similarity=-0.078 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCC--CC-CCCEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 668428999999988887512455--55-5411247761488678899999999999
Q gi|254781187|r 48 FSQPHRWQLEFMEAVDVHCHSNVN--NS-NPTIFKCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 48 ~~~p~~wq~~~l~~~~~~~~~~~~--~~-~~~~~~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
..|.+. |.+.|+++-+++++... +. .+...-+.+.++.|+|||.++-+++-..
T Consensus 8 i~G~~~-~k~~l~~~v~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~la~aia~~~ 63 (262)
T 2qz4_A 8 VAGMHE-AKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp SCSCHH-HHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HCCHHH-HHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 727999-99999999999869999997599999726886899898647999997335
No 256
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=73.13 E-value=1.8 Score=20.60 Aligned_cols=45 Identities=7% Similarity=0.029 Sum_probs=29.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEE---ECCCHHHHHHH
Q ss_conf 477614886788999999999999708-9977999---71537999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTR-PGMSIIC---IANSETQLKNT 123 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~-~~~~v~~---~A~t~~Q~~~~ 123 (367)
|+.|-+|.|+|||++.+.++.+...-. .+.-+++ +....+.+.+.
T Consensus 154 r~~Ifg~~G~GKt~Ll~~i~~~~~~~~~~~~~v~V~~~iGeR~~Ev~e~ 202 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYF 202 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEHHHHHHH
T ss_conf 5552158889965789999999985389886499999822377998876
No 257
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} SCOP: c.37.1.1
Probab=72.99 E-value=2.8 Score=19.36 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.0
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 41124776148867889999999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~lw 100 (367)
|.-.++.+.+.-|+|||+++..++-.
T Consensus 8 ~kg~~Ivi~G~~GsGKTTiak~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99976999879999889999999998
No 258
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=72.98 E-value=3.9 Score=18.47 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=18.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 2477614886788999999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~l 99 (367)
.-+.+.+..|+|||.++..++-
T Consensus 65 ~~vLL~GppGtGKT~la~~iA~ 86 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 3699889799989999999999
No 259
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=72.93 E-value=2.9 Score=19.27 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=19.1
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..||++|.+.-|+|||.++..++
T Consensus 36 ~~yKIvlvG~~~vGKSsLi~r~~ 58 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHH
T ss_conf 84899999969988899999998
No 260
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GDP-binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=72.55 E-value=3 Score=19.21 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.9
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..||++|.+-.|+|||.++..++
T Consensus 17 ~~~KI~lvG~~~vGKTSli~r~~ 39 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHH
T ss_conf 30599999969988999999997
No 261
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=72.49 E-value=4 Score=18.40 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=26.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 47761488678899999999999970899779997153
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t 116 (367)
-+.|+++.|+|||+..+.++-.. ....+.+|+.+..-
T Consensus 125 liLvtGpTGSGKTTtl~all~~~-~~~~~~~iitiEdP 161 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL-NNTKYHHILTIEDP 161 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH-HHHCCCEEEEEESS
T ss_pred EEEEECCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCC
T ss_conf 79998999998579999998743-25666338862675
No 262
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics, NPPSFA; HET: GDP; 1.96A {Thermus thermophilus HB8}
Probab=72.22 E-value=2.8 Score=19.33 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
|.|+++.+.-++|||+++..++
T Consensus 1 M~kI~lvG~~nvGKSsLin~l~ 22 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHH
T ss_conf 9889998999971999999997
No 263
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=72.13 E-value=2.8 Score=19.35 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=26.1
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 55411247761488678899999999999970899779997
Q gi|254781187|r 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 73 ~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
..|.-+|+++.++-|+|||+.+..++--+ +..-+.+
T Consensus 12 ~~p~~iriii~GpPGSGK~T~a~~La~~~-----g~~~Is~ 47 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNF-----CVCHLAT 47 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH-----CCEEEEH
T ss_conf 89987379998999998799999999986-----9826638
No 264
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 1m6n_A 1m74_A* 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=72.09 E-value=2.8 Score=19.33 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=34.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4776148867889999999999997089977999715379999999999999998623
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~ 136 (367)
++|=. ..|=|||-++++.+.-.+++..+.-|+ |+|.+=--||. ......++.+-
T Consensus 99 ~iaem-~TGEGKTLi~~l~a~l~aL~G~~V~vv-T~ndyLA~RD~--e~~~~~y~~LG 152 (844)
T 1tf5_A 99 NIAEM-KTGEGKTLTSTLPVYLNALTGKGVHVV-TVNEYLASRDA--EQMGKIFEFLG 152 (844)
T ss_dssp SEEEC-CTTSCHHHHHHHHHHHHHTTSSCEEEE-ESSHHHHHHHH--HHHHHHHHHTT
T ss_pred CEEEE-ECCCCHHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHH--HHHHHHHHHCC
T ss_conf 76787-579959999999999997179983999-75988758549--99999999819
No 265
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens}
Probab=71.83 E-value=3.2 Score=19.02 Aligned_cols=21 Identities=10% Similarity=0.381 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
-+.+.++-|+|||++...|+-
T Consensus 21 ~Ivl~GpSG~GK~tl~~~L~~ 41 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 799999899999999999997
No 266
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=71.78 E-value=3.3 Score=18.90 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
|+.|-+|+|+|||+++.-.++
T Consensus 177 r~~I~g~~g~GKt~l~~~~~~ 197 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTII 197 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 788867988886799999988
No 267
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=71.68 E-value=4.2 Score=18.28 Aligned_cols=40 Identities=8% Similarity=0.031 Sum_probs=27.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCC
Q ss_conf 62899975455998899998987406988258999807899
Q gi|254781187|r 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 (367)
Q Consensus 192 ~~l~ivDEAsgI~d~i~e~i~g~Lt~~~~~~~~i~igNP~r 232 (367)
+-.++|||++-.+..-|+.+.......... ..+++|-|.-
T Consensus 378 ~~~ilVDEfQDTn~~Q~~il~~L~~~~~~~-~l~~VGDpkQ 417 (1180)
T 1w36_B 378 FPVAMIDEFQDTDPQQYRIFRRIWHHQPET-ALLLIGDPKQ 417 (1180)
T ss_dssp CSEEEECSGGGCCHHHHHHHHHHHTTCTTC-EEEEEECGGG
T ss_pred CCEEEEEHHHCCHHHHHHHHHHHHHCCCCC-EEEEEECCCC
T ss_conf 989999615323999999999997168987-1899807865
No 268
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=71.64 E-value=3 Score=19.16 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+|+.|.+..|+|||.++-.++
T Consensus 7 ~~KivvvGd~~vGKTsLi~r~~ 28 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 2699999989979999999997
No 269
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=71.58 E-value=3 Score=19.19 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+|++|.+..|+|||.++..++
T Consensus 29 iKIvvvG~~~vGKTsLi~r~~ 49 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 699999999978999999997
No 270
>2rex_B RHO-related GTP-binding protein RHO6; complex, structural genomics consortium, SGC, GTPase, GNP, plexin, effector domain, alternative splicing; HET: GNP; 2.30A {Homo sapiens} PDB: 2cls_A*
Probab=71.20 E-value=3.1 Score=19.07 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=19.7
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.++|+.|.+..|+|||.++..++
T Consensus 9 ~~~Ki~vvG~~~vGKTsli~~~~ 31 (197)
T 2rex_B 9 ARCKLVLVGDVQCGKTAMLQVLA 31 (197)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHH
T ss_conf 41699999999958899999997
No 271
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=71.04 E-value=3.6 Score=18.68 Aligned_cols=23 Identities=39% Similarity=0.349 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
+++|.++=|+|||+++..+.-++
T Consensus 2 ~I~IeG~~GsGKST~~k~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998889878999999999984
No 272
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 1xcg_B 1tx4_B* 1kmq_A* 1dpf_A* ...
Probab=70.90 E-value=3.2 Score=19.00 Aligned_cols=23 Identities=26% Similarity=0.084 Sum_probs=19.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 12477614886788999999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
+.|+.|.+..|+|||.++..++-
T Consensus 25 r~KvvvlG~~~vGKTsLi~r~~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHC
T ss_conf 42899999999798999999960
No 273
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=70.87 E-value=2.8 Score=19.36 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
|+.|.++-|+|||++++.++--+
T Consensus 2 rI~i~GpPGSGK~T~a~~La~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998799999999997
No 274
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, P partition, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=70.51 E-value=4.5 Score=18.12 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCCCCCCC-EEEEEEECCC-CCCHHHHHHHHHHHHHHH----CCCCEEEEEC
Q ss_conf 998888751245555541-1247761488-678899999999999970----8997799971
Q gi|254781187|r 59 MEAVDVHCHSNVNNSNPT-IFKCAISAGR-GIGKTTLNAWMMLWLIST----RPGMSIICIA 114 (367)
Q Consensus 59 l~~~~~~~~~~~~~~~~~-~~~~~v~sgr-g~GKS~~~a~~~lw~~~~----~~~~~v~~~A 114 (367)
+.+|..|..-...+.... ..-++|.+.- |+|||+.+..++..+... ..|.+|+++=
T Consensus 89 i~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTttv~LA~~La~~~~la~~g~RVLlID 150 (398)
T 3ez2_A 89 IIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp HHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99999972689877789987699997888987489999999999997206664699559858
No 275
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=70.00 E-value=3.4 Score=18.85 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=23.7
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 5541124776148867889999999999997089977999
Q gi|254781187|r 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 (367)
Q Consensus 73 ~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~ 112 (367)
..+.|- +.|.+|=|+|||+++..+.- ..|..++.
T Consensus 9 ~~~~mI-IgiTG~igSGKStv~~~l~~-----~~g~~vid 42 (192)
T 2grj_A 9 HHHHMV-IGVTGKIGTGKSTVCEILKN-----KYGAHVVN 42 (192)
T ss_dssp -CCEEE-EEEECSTTSSHHHHHHHHHH-----HHCCEEEE
T ss_pred CCCCEE-EEEECCCCCCHHHHHHHHHH-----HCCCEEEE
T ss_conf 557779-99878987889999999988-----53998997
No 276
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=69.93 E-value=4.6 Score=18.04 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=24.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4776148867889999999999997089977999715
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
-+.|+++-|+|||++...++-.... ..+.+++.+..
T Consensus 27 lilisG~tGSGKTT~l~all~~i~~-~~~~~i~t~Ed 62 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQ-TKSYHIITIED 62 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHH-HCCCEEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-CCCEEEEEECC
T ss_conf 8999899996399999999984264-37845999657
No 277
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=69.85 E-value=2.6 Score=19.56 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=20.6
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 5411247761488678899999999
Q gi|254781187|r 74 NPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 74 ~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.|.-|.+.|.+-.|+|||+++-.++
T Consensus 34 ~~~~~nIlVvG~tgsGKSTlIN~Ll 58 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6884299998899793999999986
No 278
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=69.80 E-value=3.4 Score=18.81 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 24776148867889999999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw 100 (367)
.++.|.++-|+|||+.+..++-.
T Consensus 4 ~~I~i~G~pGsGKsT~a~~Lae~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 38999899999989999999998
No 279
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=69.45 E-value=3.3 Score=18.90 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..|+.|.+..|+|||.++..++
T Consensus 8 ~iKivvvG~~~vGKTsli~r~~ 29 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 3499999979979899999997
No 280
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=69.00 E-value=3.1 Score=19.07 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
.+.+.+.-|+|||+++-.++-
T Consensus 3 hi~I~G~~GsGKTTL~~~l~~ 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989998229999999986
No 281
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=68.15 E-value=4.2 Score=18.27 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.1
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+.|+++.+.-++|||+++-.++
T Consensus 4 ~~ikI~lvG~~nvGKStLin~l~ 26 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 87289999999998999999995
No 282
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=67.98 E-value=5 Score=17.79 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHCCC---CCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99999998888751245---55554112477614886788999999999
Q gi|254781187|r 54 WQLEFMEAVDVHCHSNV---NNSNPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~~---~~~~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
.|.++++.|++.+++.. ....-..-.....++-|+|||.++-.++-
T Consensus 462 GQ~~Ai~~v~~~i~~~~agl~~~~rP~~s~Lf~GPtGvGKTelAk~LA~ 510 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8688999999999999728899888652278867887568999999999
No 283
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=67.90 E-value=5.1 Score=17.78 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 428999999988887512455555411247761488678899999999
Q gi|254781187|r 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 51 p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
|..=|.+++ ++...+++. + ..-.++++.+-.|+|||+++-.++
T Consensus 15 ~~~~~~~l~-~~~~~~~~~---~-~~~l~I~l~G~tg~GKSSliN~L~ 57 (262)
T 3def_A 15 PAATQEKLI-EFFGKLKQK---D-MNSMTVLVLGKGGVGKSSTVNSLI 57 (262)
T ss_dssp CHHHHHHHH-HHHHHHHHT---T-CCEEEEEEEECTTSSHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHC---C-CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 799999999-999998844---8-888889998999995999999984
No 284
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=67.85 E-value=4 Score=18.38 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=18.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..|++|.+..|+|||.++..++
T Consensus 5 ~lKi~viG~~~vGKTsli~~~~ 26 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 5899999989909899999998
No 285
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens}
Probab=67.84 E-value=4 Score=18.38 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=19.5
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
...+|+++.+.-|+|||+++-.++
T Consensus 19 ~~~~rI~liG~tg~GKStl~N~l~ 42 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 998789999999982999999996
No 286
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=67.62 E-value=4.1 Score=18.34 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+|++|.+..++|||+++..++
T Consensus 22 ~~kI~ivG~~~~GKTsLi~~l~ 43 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 3399999999999899999997
No 287
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=67.61 E-value=5.1 Score=17.75 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCC---CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 668428999999988887512455---55541124776148867889999999999997089977999715
Q gi|254781187|r 48 FSQPHRWQLEFMEAVDVHCHSNVN---NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 48 ~~~p~~wq~~~l~~~~~~~~~~~~---~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
..|-++.. +.|+++-+.+++... ...+....+.+.++.|+|||.++-+++--. +..++.+..
T Consensus 42 i~G~~~~k-~~l~e~i~~l~~~~~~~~~g~~~~rgiLL~GPpGtGKT~la~aiA~e~-----~~~~~~i~~ 106 (278)
T 1iy2_A 42 VAGAEEAK-EELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-----RVPFITASG 106 (278)
T ss_dssp SSSCHHHH-HHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEH
T ss_pred HCCHHHHH-HHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHC-----CCCEEEEEH
T ss_conf 71699999-999999998559999986799988846876874458648999999974-----997699886
No 288
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=67.57 E-value=3.7 Score=18.62 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=20.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+.||=+.+.+|=|+|||+++..+-
T Consensus 73 ~~~~IIGLTGgigSGKStva~~L~ 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 999899987887521999999999
No 289
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=67.53 E-value=3.5 Score=18.76 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 776148867889999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw 100 (367)
+.+.+.-|+|||+++..+.--
T Consensus 11 ~~l~G~~GsGKST~a~~La~~ 31 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999879999989999999999
No 290
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=67.48 E-value=5.2 Score=17.73 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 428999999988887512455555411247761488678899999999
Q gi|254781187|r 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 51 p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
|..-|.+++..+..--.++. .-+++++.+-.|+|||++.-.++
T Consensus 18 p~~~~~~~~~~l~~l~~~~~-----~~l~I~lvG~tg~GKSSliN~ll 60 (270)
T 1h65_A 18 APATQTKLLELLGNLKQEDV-----NSLTILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-----CEEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 49999999999999874578-----85089998989963999999983
No 291
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=67.43 E-value=4.4 Score=18.15 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4776148867889999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw 100 (367)
|+.|-+|+|+|||+++...++-
T Consensus 165 r~~I~g~~g~GKt~l~~~~~~~ 186 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILN 186 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 7775658888736889987664
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=67.40 E-value=3.5 Score=18.74 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 77614886788999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~l 99 (367)
+.|.+.-|+|||+++..++-
T Consensus 5 I~i~G~pGsGKSTla~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999998999999998
No 293
>2w0m_A SSO2452; RECA, SSPF, unknown function; 2.0A {Sulfolobus solfataricus P2}
Probab=67.09 E-value=5.3 Score=17.68 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=25.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4776148867889999999999997089977999715
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
-+.|.+.-|+|||+++.-++...+.... ++++...
T Consensus 25 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~--~~~~~s~ 59 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGD--PCIYVTT 59 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTC--CEEEEES
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHH--CCCCCCC
T ss_conf 9999958998899999999999877521--3443334
No 294
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=67.00 E-value=3.4 Score=18.87 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=19.5
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+.-|.+.|.+..|+|||+++-.++
T Consensus 29 g~~~~Ilv~G~tG~GKSt~iNsl~ 52 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 870499997789993999999996
No 295
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A*
Probab=66.93 E-value=4 Score=18.41 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=26.3
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 112477614886788999999999999708997799971537
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~ 117 (367)
..+|+.+.++-|+||++.+..++--+ +...+.+..-.
T Consensus 26 ~~~riii~GpPGSGKgTqa~~La~~~-----g~~hIs~GdlL 62 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF-----GLQHLSSGHFL 62 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH-----CCCCEEHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-----CCEEECHHHHH
T ss_conf 31449998999998799999999997-----98787389999
No 296
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.73A {Homo sapiens}
Probab=66.82 E-value=4.4 Score=18.18 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=18.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
-.|+.|.+..|+|||.++..++
T Consensus 20 ~iKvvivG~~~vGKTSLi~r~~ 41 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 3189999989989899999997
No 297
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=66.59 E-value=1.9 Score=20.38 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=26.0
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHH----CCCCEEEEEC
Q ss_conf 47761488-678899999999999970----8997799971
Q gi|254781187|r 79 KCAISAGR-GIGKTTLNAWMMLWLIST----RPGMSIICIA 114 (367)
Q Consensus 79 ~~~v~sgr-g~GKS~~~a~~~lw~~~~----~~~~~v~~~A 114 (367)
-++|.+.. |+|||+++..++..++.. ..|.+|+++=
T Consensus 113 VIav~n~KGGvGKTT~avnLA~~LA~~~~~~~~G~rVLlID 153 (403)
T 3ez9_A 113 VIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID 153 (403)
T ss_dssp EEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEEEE
T ss_conf 99996817720799999999999984315665899689997
No 298
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=66.57 E-value=4.1 Score=18.35 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=23.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 2477614886788999999999999708997799971
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
-|++|.++-|+|||+.+..++--+ +...+.+.
T Consensus 5 mrI~i~G~PGsGK~T~a~~La~~~-----g~~~Is~G 36 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF-----HAAHLATG 36 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH-----CCEEECHH
T ss_conf 289998999998799999999987-----99368689
No 299
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A*
Probab=66.49 E-value=4.2 Score=18.26 Aligned_cols=23 Identities=17% Similarity=-0.056 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
-++|.++-|+|||+++..++--+
T Consensus 3 iI~i~G~~GsGKSTva~~La~~L 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997899999999999999996
No 300
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=66.48 E-value=4.5 Score=18.11 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+++++.+-.++|||+++..++
T Consensus 4 ~~V~lvG~~~~GKSsLi~~L~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 199999899998999999997
No 301
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome dynamics; HET: GDP; 2.5A {Homo sapiens}
Probab=66.37 E-value=4.2 Score=18.28 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+|+.|.+..|+|||.++..++
T Consensus 34 ~iKI~vvG~~~vGKTSLi~r~~ 55 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 7899999999978999999996
No 302
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=66.31 E-value=5.4 Score=17.59 Aligned_cols=55 Identities=18% Similarity=0.063 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH--H-HHHHCCCCEEEEE
Q ss_conf 999999888875124555554112477614886788999999999--9-9970899779997
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML--W-LISTRPGMSIICI 113 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~l--w-~~~~~~~~~v~~~ 113 (367)
..+.+..|.+.+..... ....|+|.+-=|+|||++++.++- . .-.++++....+.
T Consensus 129 R~~~~~~i~~~L~~~~~----~~~~V~I~G~gG~GKTtLA~~~~~~~~~~~~~f~~~v~wv~ 186 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKG----EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS 186 (591)
T ss_dssp CHHHHHHHHHHHTTSTT----SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE
T ss_pred CHHHHHHHHHHHHHCCC----CCCEEEEECCCCCCHHHHHHHHHHCHHHHHHCCCCEEEEEE
T ss_conf 29999999999871389----97379988999776899999999678988614897389998
No 303
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=66.21 E-value=5.5 Score=17.58 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=24.2
Q ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4776148-8678899999999999970899779997
Q gi|254781187|r 79 KCAISAG-RGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 79 ~~~v~sg-rg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
.++|.|. =|+|||++++.++..++. .|.+|+++
T Consensus 38 ii~v~s~KGGvGKTT~a~nlA~~LA~--~G~rVllI 71 (298)
T 2oze_A 38 VILNNYFKGGVGKSKLSTMFAYLTDK--LNLKVLMI 71 (298)
T ss_dssp EEEECCSSSSSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHH--CCCCEEEE
T ss_conf 99975898981899999999999997--79908999
No 304
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, disease mutation, mitochondrion, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=66.20 E-value=5.5 Score=17.58 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=55.8
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH------CCCCCCCCCEEEEEEECC
Q ss_conf 78999975232012598888554301466888443666842899999998888751------245555541124776148
Q gi|254781187|r 12 EQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH------SNVNNSNPTIFKCAISAG 85 (367)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~~~~~~~~~~p~~wq~~~l~~~~~~~~------~~~~~~~~~~~~~~v~sg 85 (367)
++...+.+...=...|-..-.+.+. |-.-..|+ ..++++.+.+++. .......+..+|+.|.+.
T Consensus 13 ~~~~~~~l~~~~~~g~r~alar~it--------lvE~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~IGitG~ 82 (349)
T 2www_A 13 EQRFVDKLYTGLIQGQRACLAEAIT--------LVESTHSR--KKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGP 82 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH--------HHHCCSHH--HHHHHHHHHHHHHHHHHHHHHTTTTCCSCEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH--------HHHCCCHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC
T ss_conf 3523999999998799989999999--------98789925--6999999999876520233356778887058862179
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
Q ss_conf 8678899999999999970899779997153799999
Q gi|254781187|r 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 (367)
Q Consensus 86 rg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~ 122 (367)
=|+|||+++..++-.+.. .+.++.++|.--..-.+
T Consensus 83 PGaGKStli~~l~~~~~~--~g~~vaVla~Dpss~~~ 117 (349)
T 2www_A 83 PGAGKSTFIEYFGKMLTE--RGHKLSVLAVDPSSCTS 117 (349)
T ss_dssp TTSSHHHHHHHHHHHHHH--TTCCEEEEECCC-----
T ss_pred CCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCCHHH
T ss_conf 998899999999999984--79717899578786626
No 305
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=66.08 E-value=4.9 Score=17.86 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 7761488678899999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
.+|.+..|+|||++..++.+-+
T Consensus 32 t~I~G~NGsGKStildAI~~~L 53 (483)
T 3euj_A 32 TTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHH
T ss_conf 8999488722999999999997
No 306
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=65.80 E-value=3.8 Score=18.52 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4776148867889999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw 100 (367)
++.+.+..|+|||+++-.+.--
T Consensus 4 ~Iil~G~~GsGKSTiak~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999889999999999
No 307
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=65.69 E-value=3.5 Score=18.78 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
+++|.+.-|+|||+++..++
T Consensus 37 ~iaIvG~sGsGKSTLl~ll~ 56 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999982999999997
No 308
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=65.65 E-value=5.6 Score=17.51 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999998888751245555541124776148867889999999999997089977999715379999999999999998
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~ 133 (367)
|-.+++.+.+.++.+.. .+.|.+-.|++|+.++|.++-- .+..++|++++..+|.. +..+++-++.
T Consensus 17 q~~ai~~l~~~l~~g~~-------~~~l~Gl~gsa~a~~~a~l~~~-----~~~p~lvVt~~~~~A~~-l~~dL~~~~~ 82 (661)
T 2d7d_A 17 QPKAIEKLVKGIQEGKK-------HQTLLGATGTGKTFTVSNLIKE-----VNKPTLVIAHNKTLAGQ-LYSEFKEFFP 82 (661)
T ss_dssp HHHHHHHHHHHHHTTCS-------EEEEEECTTSCHHHHHHHHHHH-----HCCCEEEECSSHHHHHH-HHHHHHHHCT
T ss_pred CHHHHHHHHHHHHCCCC-------CEEEECCCCCHHHHHHHHHHHH-----HCCCEEEEECCHHHHHH-HHHHHHHHCC
T ss_conf 89999999999966998-------6898688863899999999997-----39999999089999999-9999997669
No 309
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=65.60 E-value=4.4 Score=18.14 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 477614886788999999999999708997799971
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
|+.|.++-|+|||+.+..++--+ +...+.+.
T Consensus 2 ~I~i~GpPGsGK~T~a~~La~~~-----~~~~is~g 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-----GIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-----SCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCEEECHH
T ss_conf 79998999998699999999997-----99478689
No 310
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=65.22 E-value=4.6 Score=18.04 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.7
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+|+++.+.-++|||+++..++
T Consensus 5 ~kI~ivG~~nvGKSSLin~l~ 25 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 399999989999999999996
No 311
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=65.09 E-value=4.3 Score=18.22 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=28.3
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
Q ss_conf 411247761488678899999999999970899779997153799
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q 119 (367)
+.+.|+.|.++-|+|||+.+..++-- .+...+.+..-.++
T Consensus 5 ~~~m~Iil~GpPGSGK~T~a~~La~~-----~~~~~is~GdllR~ 44 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH-----FELKHLSSGDLLRD 44 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH-----SSSEEEEHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH-----HCCEEECHHHHHHH
T ss_conf 23244999899999879999999998-----79978858999999
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} SCOP: c.37.1.25
Probab=65.06 E-value=4.2 Score=18.26 Aligned_cols=29 Identities=21% Similarity=0.136 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 7761488678899999999999970899779997
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
+.|.+.-|+|||+++-.+.-- .+..+++.
T Consensus 5 Iii~G~~GsGKTTla~~La~~-----l~~~~~~~ 33 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQ-----LDNSAYIE 33 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHH-----SSSEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH-----CCCCEEEE
T ss_conf 999899998989999999998-----09989986
No 313
>1m2o_B GTP binding, GTP-binding protein SAR1; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=65.06 E-value=4.3 Score=18.20 Aligned_cols=20 Identities=30% Similarity=0.109 Sum_probs=17.2
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 24776148867889999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~ 97 (367)
.|+.|.+..++|||++...+
T Consensus 24 ~KI~ivG~~~~GKTsLl~~l 43 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHML 43 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 38999999999989999999
No 314
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=65.04 E-value=3.4 Score=18.81 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=26.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 1124776148867889999999999997089977999715
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
...|++|-+..|+|||+++..+.-.+ ...+..++++..
T Consensus 11 ~~lrI~iEG~~GsGKTT~~~~L~e~l--~~~~~~v~~~~E 48 (341)
T 1osn_A 11 GVLRIYLDGAYGIGKTTAAEEFLHHF--AITPNRILLIGE 48 (341)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHTT--TTSGGGEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH--HHCCCCEEEEEC
T ss_conf 76599998886788999999999987--116986699718
No 315
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=64.94 E-value=5.8 Score=17.43 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.8
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 5411247761488678899999999
Q gi|254781187|r 74 NPTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 74 ~~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..+.||+.+.+--|+|||.++..++
T Consensus 5 ~dy~~KvvlvGd~~VGKTsl~~r~~ 29 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFS 29 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 6689899999999979999999996
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=64.70 E-value=5.9 Score=17.40 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 477614886788999999999999708997
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~ 108 (367)
-+++.++-|+|||+++..+.-.+-..+...
T Consensus 5 iI~i~G~~GsGKTT~~~~L~~~l~~~~~~~ 34 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 34 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 899989999598999999999987659976
No 317
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas}
Probab=64.63 E-value=4.6 Score=18.02 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
|+.|.++-|+|||+.+..++--+
T Consensus 2 rIvi~GpPGSGK~Tqa~~La~~~ 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79998899998799999999997
No 318
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=64.49 E-value=5.2 Score=17.74 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+++++.+-.++|||+++..++
T Consensus 7 ~~~I~lvG~~~vGKSSLin~l~ 28 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 4589999999987999999996
No 319
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=64.48 E-value=5.2 Score=17.71 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4776148867889999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw 100 (367)
|+.|-+|.|+|||++.+.++-+
T Consensus 159 R~~Ifg~~G~GKT~Ll~~i~~~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHH
T ss_conf 3253268999803987777762
No 320
>3l0i_B RAS-related protein RAB-1A; GEF/GDF-RAB complex, GTP-binding, guanine-nucleotide exchange factor, GDI-displacement factor; 2.85A {Homo sapiens}
Probab=64.43 E-value=1.6 Score=20.90 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHH
Q ss_conf 41124776148867889999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~ 97 (367)
...||++|.+..|+|||.++-.+
T Consensus 31 ~~~~KI~vlG~~~vGKTSLi~rl 53 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRF 53 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSS
T ss_pred CEEEEEEEECCCCCCHHHHHHHH
T ss_conf 77989999998995989999999
No 321
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=64.39 E-value=5.9 Score=17.36 Aligned_cols=38 Identities=29% Similarity=0.217 Sum_probs=29.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 4776148867889999999999997089977999715379
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~ 118 (367)
=++|.+-.|+|||+++..++-.+. ..|.+|.++-.+.+
T Consensus 8 ii~ivG~~~SGKTTLi~~li~~L~--~~G~~V~~IKh~~h 45 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALC--ARGIRPGLIKHTHH 45 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEEEECCC
T ss_conf 799990699989999999999999--77982889974588
No 322
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=64.17 E-value=4.5 Score=18.10 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 247761488678899999999999970899779997
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
+-++|.++=|+|||+++..+-- .+..++..
T Consensus 9 ~iIgItG~~GSGKsTva~~l~~------~g~~~~~~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS------WGYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH------TTCCEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHH------CCCEEEEC
T ss_conf 8999989987769999999998------79939982
No 323
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=64.00 E-value=4.9 Score=17.86 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=17.3
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 24776148867889999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~ 97 (367)
+|+.+.+..|+|||++...+
T Consensus 19 ~kI~ivG~~~~GKSSLl~~l 38 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKF 38 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 49999999999989999999
No 324
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=63.85 E-value=4.9 Score=17.86 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 4776148867889999999999997089977999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~ 112 (367)
=++|.+|-|+|||+++..+- ..|..++-
T Consensus 4 iIgitG~igSGKStv~~~l~------~~G~~vid 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT------DLGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH------TTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHH------HCCCEEEE
T ss_conf 99988998766999999999------88996997
No 325
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=63.82 E-value=4.3 Score=18.22 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
++.|.++-|+|||+.+..++--+
T Consensus 7 ~I~i~GppGSGKsT~a~~La~~~ 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998799999999997
No 326
>1sgw_A Putative ABC transporter; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.12
Probab=63.73 E-value=3.6 Score=18.66 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+++.+..|+|||++...++
T Consensus 37 i~~liG~NGsGKSTLl~~l~ 56 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999983999999996
No 327
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3ikj_A 1vdz_A
Probab=63.64 E-value=5.7 Score=17.47 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4776148867889999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw 100 (367)
|..|-+++|+|||++...++-|
T Consensus 229 r~~I~g~~g~GKt~l~~~i~~~ 250 (588)
T 3mfy_A 229 TAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp EEEECSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 3576568899857999999854
No 328
>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=63.40 E-value=4.4 Score=18.17 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 7761488678899999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
++|.++-|+|||+++..++--+
T Consensus 17 ItI~g~~GsGKsTia~~LA~~L 38 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 9857999899799999999994
No 329
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=63.40 E-value=6.2 Score=17.25 Aligned_cols=30 Identities=20% Similarity=0.084 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 477614886788999999999999708997
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~ 108 (367)
-+.|.++-|+|||+++..+.-++-..+...
T Consensus 3 iivi~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINN 32 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 999989999798999999999998759977
No 330
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=63.11 E-value=3.7 Score=18.64 Aligned_cols=55 Identities=16% Similarity=0.061 Sum_probs=34.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 47761488678899999999999970899779997153799999999999999986231
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~ 137 (367)
++|=. ..|=|||-+++..+.-.+++..+. -+||.|.+=--||. ......++.+..
T Consensus 127 ~iaEm-~TGEGKTLvatl~a~lnAL~G~~V-hvvTvNdYLA~RDa--e~m~~~y~~LGL 181 (922)
T 1nkt_A 127 NVAEM-KTGEGKTLTCVLPAYLNALAGNGV-HIVTVNDYLAKRDS--EWMGRVHRFLGL 181 (922)
T ss_dssp EEEEC-CTTSCHHHHTHHHHHHHHTTTSCE-EEEESSHHHHHHHH--HHHHHHHHHTTC
T ss_pred CEEEE-ECCCCHHHHHHHHHHHHHHCCCCE-EEEECCHHHHHHHH--HHHHHHHHHHCC
T ss_conf 66776-578969999999999997179981-99976988879689--986999988297
No 331
>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B}
Probab=62.88 E-value=6.3 Score=17.19 Aligned_cols=21 Identities=14% Similarity=-0.091 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 776148867889999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw 100 (367)
+-+-++.|+|||+++.+++.-
T Consensus 55 l~l~Gp~GsGKThL~~ai~~~ 75 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 988899999899999999998
No 332
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=62.82 E-value=3.9 Score=18.45 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+++.+..|+|||++.-.++
T Consensus 33 ~~~i~G~nGsGKSTLlk~i~ 52 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998899996999999995
No 333
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=62.63 E-value=6.4 Score=17.17 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 28999754559988999989874069
Q gi|254781187|r 193 MAVFNDEASGTPDIINKSILGFFTEL 218 (367)
Q Consensus 193 ~l~ivDEAsgI~d~i~e~i~g~Lt~~ 218 (367)
..+++||...+.....+++.+.+-+.
T Consensus 104 ~ilfIDEihr~~k~~qd~ll~~~E~~ 129 (334)
T 1in4_A 104 DVLFIDEIHRLNKAVEELLYSAIEDF 129 (334)
T ss_dssp CEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHCCHHCE
T ss_conf 30234458654366887510100020
No 334
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=62.56 E-value=4.3 Score=18.21 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
+++|.+.-|+|||+++..++-
T Consensus 48 ~vaIvG~sGsGKSTLl~ll~g 68 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999879999999947
No 335
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=62.55 E-value=4.3 Score=18.20 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
+++|.+.-|+|||+++..++
T Consensus 33 ~vaIvG~sGsGKSTLl~ll~ 52 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999998999999996
No 336
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=61.70 E-value=5.8 Score=17.43 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 47761488678899999999999970899779997
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
|+.|.++-|+|||+.+..++-.+ +...+.+
T Consensus 2 ~I~i~GpPGsGK~T~a~~la~~~-----~~~~is~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY-----EIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCEEECH
T ss_conf 79998999998799999999997-----9937869
No 337
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION transport, hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 1um2_C
Probab=61.65 E-value=6.7 Score=17.06 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4776148867889999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw 100 (367)
|..|-+++|+|||.+...++.|
T Consensus 223 r~~I~g~~g~GKt~ll~~Ia~~ 244 (578)
T 3gqb_A 223 TAAIPGPFGSGKSVTQQSLAKW 244 (578)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHH
T ss_conf 5588568888801999998753
No 338
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=61.35 E-value=4.4 Score=18.17 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 47761488678899999999999970899779997
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
=++|+++-|+|||+++..+.--+-.. +.+++++
T Consensus 7 IIgItG~SGSGKTTva~~L~~il~~~--~v~~~vI 39 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRRE--GVKAVSI 39 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH--TCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEE
T ss_conf 89998999780999999999985346--9976999
No 339
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=61.19 E-value=5.1 Score=17.77 Aligned_cols=22 Identities=27% Similarity=0.122 Sum_probs=18.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+|++|.+-.|+|||+++..++
T Consensus 21 e~KI~lvG~~~vGKTsLi~~l~ 42 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFS 42 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 1799999999999899999997
No 340
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A
Probab=61.00 E-value=6 Score=17.34 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 47761488678899999999999970899779997
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
++.+.++-|+|||+.+..++--+ +...+.+
T Consensus 2 ~I~i~GppGSGKsT~a~~La~~~-----g~~~is~ 31 (206)
T 2rgx_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHIST 31 (206)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCEEECH
T ss_conf 89998999998799999999997-----9916868
No 341
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=60.83 E-value=6.9 Score=16.97 Aligned_cols=32 Identities=22% Similarity=0.132 Sum_probs=23.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 2477614886788999999999999708997799971
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
.-+...++-|+|||+++..++--. +.+++.+.
T Consensus 170 ~~iL~~GPPGtGKT~lA~alA~~l-----~~~~i~in 201 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC-----GGKALNVN 201 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC-----CCCEEEEE
T ss_conf 459998999998899999999985-----99889997
No 342
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=60.66 E-value=4.8 Score=17.90 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
.++|.+.-|+|||++...+.=
T Consensus 30 ~vaivG~sGsGKSTLl~ll~g 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999998739999999967
No 343
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION transport, hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
Probab=60.66 E-value=4 Score=18.43 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
|+.|-+|+|+|||.+...++.+.
T Consensus 149 r~~I~gg~GvGKt~L~~~i~r~~ 171 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQA 171 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHC
T ss_pred EEECCCCCCCCHHHHHHHHHHHH
T ss_conf 60045777864266899998762
No 344
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=60.48 E-value=7 Score=16.93 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
.+...++.|+|||+++-.++-
T Consensus 57 s~lf~GPPG~GKTTlA~iiA~ 77 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 489889899879999999998
No 345
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=60.43 E-value=7 Score=16.93 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=24.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 47761488678899999999999970899779997
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
=+||+.==|+|||++++.++.-++. .|.||+++
T Consensus 43 iIAVaGKGGVGKTTtsvNLA~aLA~--~GkrVLlI 75 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSI--LGKRVLQI 75 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEE
T ss_conf 9999899875799999999999998--79949998
No 346
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=60.14 E-value=5.5 Score=17.57 Aligned_cols=23 Identities=26% Similarity=0.149 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
-+.+.++-|+|||+++..++-.+
T Consensus 14 iI~l~G~pGSGKsT~a~~La~~~ 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999999899999999986
No 347
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum 3D7}
Probab=60.12 E-value=6.9 Score=16.98 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHH
Q ss_conf 541124776148867889999999
Q gi|254781187|r 74 NPTIFKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 74 ~~~~~~~~v~sgrg~GKS~~~a~~ 97 (367)
+|..+.++|.+--++|||+++..+
T Consensus 26 ~~~~~~V~lvG~~nvGKSSLln~L 49 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIV 49 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 999999999999998599999998
No 348
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=60.11 E-value=7.1 Score=16.89 Aligned_cols=43 Identities=14% Similarity=0.028 Sum_probs=28.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC--CHHHHHHHH
Q ss_conf 776148867889999999999997089977999715--379999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN--SETQLKNTL 124 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~--t~~Q~~~~l 124 (367)
+.|++.-|+|||+++..+++-.+ ..+.+|++.+. +..++...+
T Consensus 71 ~vi~g~pg~GKT~~~l~l~~~~~--~~g~~vl~~SlEm~~~~l~~R~ 115 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSLEMGKKENIKRL 115 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH--TTTCEEEEEESSSCHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCHHHHHHHH
T ss_conf 99995799999999999999874--1698299984768887899999
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=60.06 E-value=5.9 Score=17.40 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 7761488678899999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
+.+.+..|+|||+++-.++--+
T Consensus 5 Ivl~G~~GsGKSTv~~~LA~~l 26 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998899999999996
No 350
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=59.88 E-value=5.1 Score=17.77 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
.++|.+..|.|||++...++
T Consensus 36 ~vaivG~sGsGKSTLl~ll~ 55 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999883999999995
No 351
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=59.79 E-value=6.5 Score=17.13 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+++.+..|+|||+++..+.
T Consensus 49 ~vgLvG~NGaGKSTLlkiL~ 68 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999955999999996
No 352
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=59.70 E-value=6.4 Score=17.15 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 477614886788999999999999708997799971537
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~ 117 (367)
|++|.++-|+|||+.+..++--+ +...+.+..-.
T Consensus 10 ~I~i~GppGsGK~T~a~~la~~~-----~~~~is~g~ll 43 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF-----GIPQISTGDML 43 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-----TCCEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCEEECHHHHH
T ss_conf 79998999998799999999997-----99378688999
No 353
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=59.56 E-value=7 Score=16.91 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=19.2
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..+++++.+.-++|||+++..++
T Consensus 11 ~~~~i~ivG~~n~GKSsLin~l~ 33 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 89699999999999999999996
No 354
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str}
Probab=59.53 E-value=7.3 Score=16.83 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=23.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 776148867889999999999997089977999715
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
+++-++-|+|||+++..+.-++ .....++++.+
T Consensus 7 I~ieG~dGsGKsT~~~~L~~~l---~~~~~~~~~~~ 39 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWI---ELKRDVYLTEW 39 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH---TTTSCEEEEET
T ss_pred EEEECCCCCCHHHHHHHHHHHH---HHCCCEEEEEC
T ss_conf 9998998872999999999999---71898899978
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus VF5}
Probab=59.52 E-value=6.5 Score=17.12 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
++.+.+..|+|||++...++--+
T Consensus 2 ~I~l~G~~GsGKSTvg~~La~~L 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998899999999995
No 356
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=59.27 E-value=6 Score=17.33 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
++.+.+..|+|||+++-.++-.+
T Consensus 6 ~Iil~G~~GsGKtTi~k~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998689998999999999995
No 357
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=59.09 E-value=7.4 Score=16.79 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+|+++.+.-|+|||++...++
T Consensus 8 ~ki~lvG~~~vGKSsLi~~l~ 28 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 089999999989899999997
No 358
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=59.02 E-value=4.3 Score=18.24 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.0
Q ss_pred EEEEEEECCCCCCHHHHHHHH
Q ss_conf 124776148867889999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~ 97 (367)
-+|++|.+-.|+|||+++..+
T Consensus 22 ~~ki~ivG~~~vGKTsLi~~l 42 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHT
T ss_pred EEEEEEECCCCCCHHHHHHHH
T ss_conf 889999999998889999999
No 359
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=58.94 E-value=5.9 Score=17.40 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 77614886788999999999999708997799971
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
+.+.+.-|+|||+++..++ ...+..++.+.
T Consensus 12 I~i~G~~GsGKTT~a~~La-----~~lg~~~~~~~ 41 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALA-----NLPGVPKVHFH 41 (191)
T ss_dssp EEEEECTTSCHHHHHHHHH-----TCSSSCEEEEC
T ss_pred EEEECCCCCCHHHHHHHHH-----HHHCCCEEECC
T ss_conf 9998999998899999999-----99699989836
No 360
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=58.94 E-value=5.5 Score=17.58 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
.++|.+.-|+|||+++..++-
T Consensus 47 ~iaIvG~sGsGKSTLl~ll~g 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999869999999976
No 361
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=58.84 E-value=5.4 Score=17.59 Aligned_cols=21 Identities=38% Similarity=0.265 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
.+++.+..|.|||++.-.++=
T Consensus 32 ~v~liGpNGaGKSTLlk~i~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999998999849999999965
No 362
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell membrane, GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A*
Probab=58.84 E-value=7 Score=16.94 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.3
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+++++.+--++|||+++..+.
T Consensus 4 l~I~lvG~~nvGKSTLin~L~ 24 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLT 24 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 889999899997999999996
No 363
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=58.69 E-value=5.1 Score=17.79 Aligned_cols=20 Identities=40% Similarity=0.493 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+++.++.|+|||++.-.+.
T Consensus 36 i~~liG~nGaGKSTLl~~i~ 55 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999983999999997
No 364
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=58.63 E-value=7.5 Score=16.74 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=26.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 776148867889999999999997089977999715
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
+.|.++-|.|||+++..+++. ++...+.++++.+.
T Consensus 245 ~vi~g~~g~GKSt~~~~la~~-~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQ-WGTAMGKKVGLAML 279 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHH-HTTTSCCCEEEEES
T ss_pred EEEECCCHHHHHHHHHHHHHH-HHHHCCCCCCCCCC
T ss_conf 898631013389999999974-54403983010554
No 365
>3hws_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli k-12} PDB: 3hte_A
Probab=58.50 E-value=7.6 Score=16.72 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 776148867889999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw 100 (367)
+...++-|+|||.++-.++-.
T Consensus 54 ~Lf~GPTGvGKTelAk~LA~~ 74 (363)
T 3hws_A 54 ILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 899899988899999999998
No 366
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=58.49 E-value=6.7 Score=17.03 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=18.4
Q ss_pred CEEEEEEECCCCCCHHHHHHHH
Q ss_conf 1124776148867889999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~ 97 (367)
..+|+++.+--|+|||.+...+
T Consensus 19 ~~~KI~l~G~~~vGKSSLi~~l 40 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
T ss_conf 8428999998998999999999
No 367
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3}
Probab=58.06 E-value=7.7 Score=16.68 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=27.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 4776148867889999999999997089977999715379999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~ 121 (367)
-+.|.+.-|+|||.++.-++.-.+......-.+.+..+..++.
T Consensus 25 ~~~i~G~~GsGKT~l~l~l~~~~~~~~~~v~~is~e~~~~~~~ 67 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVR 67 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH
T ss_conf 9999978998899999999999987499871035667999999
No 368
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=58.01 E-value=7.3 Score=16.81 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
++++.+..|+|||+++..+.
T Consensus 463 ~~gLvG~NGsGKSTLlr~La 482 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999981999999996
No 369
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=57.75 E-value=6.8 Score=17.01 Aligned_cols=20 Identities=40% Similarity=0.430 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+++.+..|.|||++.-.++
T Consensus 48 i~~iiG~nGaGKSTL~~~i~ 67 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999999999999985
No 370
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=57.75 E-value=6.8 Score=17.01 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 77614886788999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~l 99 (367)
+.+.++-|+|||+++..+.-
T Consensus 6 I~l~G~~GsGKsTvA~~La~ 25 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999998999999999
No 371
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A*
Probab=57.31 E-value=6.5 Score=17.12 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+++.+.-|+|||++..++.
T Consensus 33 ~~~ivG~SGsGKSTLl~~i~ 52 (235)
T 1l2t_A 33 FVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998899998999999998
No 372
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C*
Probab=57.30 E-value=5.5 Score=17.56 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
.+++.+..|.|||++...+.=
T Consensus 28 i~~iiGpNGaGKSTLl~~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999998999819999999947
No 373
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=57.29 E-value=6.3 Score=17.19 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.++++|.+-.|+|||+++-.+.
T Consensus 69 ~l~iai~G~~n~GKSsliN~l~ 90 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 7269998899987999999984
No 374
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=57.28 E-value=5.6 Score=17.50 Aligned_cols=22 Identities=18% Similarity=0.009 Sum_probs=18.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+|++|.+-.++|||++.-.+.
T Consensus 21 ~~kI~ivG~~nvGKSSLin~l~ 42 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLK 42 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTS
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 5799999999998999999997
No 375
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A*
Probab=57.09 E-value=7.1 Score=16.87 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+++.+..|.|||++.-.+.
T Consensus 31 i~~liG~nGaGKSTL~~~i~ 50 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998889989999999985
No 376
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=57.05 E-value=5.8 Score=17.43 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
.++|.+.-|.|||++...++
T Consensus 66 ~vaivG~sGsGKSTLl~li~ 85 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999975999999996
No 377
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=56.98 E-value=8 Score=16.56 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 3666842899999998888751245-----555541124776148867889999999999997089977999715
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNV-----NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~-----~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
....|.+. +.+.|+++-+.+++.. +...| .-+.+.+..|+|||+++-.++-- -+..++.+..
T Consensus 16 ~di~G~~~-~k~~l~~~i~~l~~~~~~~~~g~~~p--~giLl~GppGtGKT~la~aia~e-----~~~~~~~i~~ 82 (254)
T 1ixz_A 16 KDVAGAEE-AKEELKEIVEFLKNPSRFHEMGARIP--KGVLLVGPPGVGKTHLARAVAGE-----ARVPFITASG 82 (254)
T ss_dssp GGCCSCHH-HHHHHHHHHHHHHCHHHHHHTTCCCC--SEEEEECCTTSSHHHHHHHHHHH-----TTCCEEEEEH
T ss_pred HHHCCHHH-HHHHHHHHHHHHHCHHHHHHCCCCCC--CEEEEECCCCCCCHHHHHHHHHH-----CCCCEEEEEH
T ss_conf 99536999-99999999999879999997599988--65787778765627999999976-----3997699886
No 378
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis}
Probab=56.77 E-value=8.1 Score=16.54 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=30.1
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 1124776148867889999999999997089977999715
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
-|| +++-+.=|+|||+.+..+.-++-......+++.+..
T Consensus 21 gmf-IviEG~dGsGKTT~~~~L~e~L~~~~~~~~v~~~~e 59 (223)
T 3ld9_A 21 SMF-ITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE 59 (223)
T ss_dssp CEE-EEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred CEE-EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 649-998899788699999999999997179972998559
No 379
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A*
Probab=56.62 E-value=7.5 Score=16.75 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=18.1
Q ss_pred EEEEEEECCCCCCHHHHHHHH
Q ss_conf 124776148867889999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~ 97 (367)
-+|+.|.+--|+|||+++..+
T Consensus 29 e~KIvivG~~~vGKSSLi~~l 49 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHH
T ss_conf 379999999998689999999
No 380
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=56.33 E-value=4.6 Score=18.04 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=24.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 7761488678899999999999970899779997153
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t 116 (367)
+++.+.-|+|||+++-.++=.+ ...+.+|.+.-..
T Consensus 5 i~ivG~nGsGKTTLl~~l~g~l--~~~~g~V~~~g~~ 39 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPIL--RERGLRVAVVKRH 39 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHH--HHTTCCEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHHHHHH--CCCCCEEEEEEEC
T ss_conf 9998599988999999997102--7799779994112
No 381
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=56.30 E-value=7.9 Score=16.60 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 24776148867889999999999997089977999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~ 112 (367)
|=++|.+|=|+|||+++..+. ..|..++-
T Consensus 5 ~IIgItG~igSGKStva~~l~------~~G~~vid 33 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFA------DLGINVID 33 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHH------HTTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHH------HCCCCEEE
T ss_conf 699987988787999999999------87991998
No 382
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=55.87 E-value=7.6 Score=16.70 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
++.+.+.-|+|||+++-.++-.+
T Consensus 6 ~Iil~G~~GsGKSTv~k~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999994
No 383
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=55.81 E-value=7.5 Score=16.75 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
-+...++-|+|||.++-.++-
T Consensus 52 giLl~GPpG~GKT~lAkalA~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 699989999888899999988
No 384
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell cycle, hydrolase, membrane metal-binding, metalloprotease; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=55.77 E-value=6 Score=17.32 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 77614886788999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~l 99 (367)
+.+.++.|+|||.++-+++-
T Consensus 47 vLl~GppGtGKT~la~aia~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 68768999980079999999
No 385
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=55.49 E-value=8.5 Score=16.41 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 247761488678899999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+|+.+.+.-|+|||.++..+.
T Consensus 17 ~kI~liG~~~~GKTsli~~l~ 37 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999999988799999997
No 386
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 2zzy_A
Probab=55.48 E-value=8 Score=16.57 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 77614886788999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~l 99 (367)
+.+.++-|+|||+++..++-
T Consensus 4 Ivl~GpsGsGK~Tl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999998999999997
No 387
>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl}
Probab=55.42 E-value=7.4 Score=16.76 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
-+.|.+.-|+|||+++..+.-.+
T Consensus 7 ~I~i~G~~GsGKTTla~~La~~~ 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998689999799999999996
No 388
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=55.37 E-value=4.2 Score=18.27 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
.++|.+.-|+|||+++..++
T Consensus 82 ~vaIvG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999986999999996
No 389
>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8}
Probab=55.03 E-value=6.4 Score=17.16 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+++.+..|.|||++.-.++
T Consensus 35 ~~~iiG~nGaGKSTLlk~i~ 54 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999999999999996
No 390
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=54.66 E-value=8.7 Score=16.33 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=19.5
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 411247761488678899999999
Q gi|254781187|r 75 PTIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 75 ~~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
+.+++++|.+.-++|||+++-.+.
T Consensus 21 ~~~p~I~ivG~~nvGKSSLiN~L~ 44 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 899899999999984999999996
No 391
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=54.48 E-value=7.1 Score=16.88 Aligned_cols=20 Identities=35% Similarity=0.315 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+++.+..|.|||++.-.+.
T Consensus 49 ~~~liGpNGaGKSTLl~~i~ 68 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999964999999996
No 392
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=54.22 E-value=8.9 Score=16.29 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 4776148867889999999999997089977999715379999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~ 121 (367)
|..|-++.|+|||++.+.++.. ....+++.+--....+
T Consensus 73 r~~I~~~~g~GKt~ll~~i~~~-----~~~~~~v~~~iger~~ 110 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG-----ASADIIVLALIGERGR 110 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH-----SCCSEEEEEEESCCHH
T ss_pred CCCEECCCCCCHHHHHHHHHHH-----HCCCCEEEEEEEEECH
T ss_conf 5400059998789999877554-----2489548999987210
No 393
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=54.19 E-value=8.6 Score=16.38 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 247761488678899999999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
.++.+.++-|+|||+.+..++--+
T Consensus 6 ~~I~i~GppGsGK~T~a~~La~~~ 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 059998999998799999999997
No 394
>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=54.16 E-value=8.9 Score=16.28 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=25.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 7761488678899999999999970899779997
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
++|.+.=|+|||+.+..+.-++-.......++..
T Consensus 12 I~ieG~dGsGKST~~~~L~~~L~~~g~~~~~~~~ 45 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRF 45 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9998998888999999999999867996699864
No 395
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, acetylation, ATP-binding, cytoplasm, lipid-binding, nucleotide-binding; HET: ADP; 3.00A {Mus musculus}
Probab=54.06 E-value=8.9 Score=16.27 Aligned_cols=64 Identities=16% Similarity=0.048 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCC---CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 66684289999999888875124---5555541124776148867889999999999997089977999715
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSN---VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~---~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
.+.|.+..-.++.+.|...+.+. .....+...-+.+.++.|+|||.++-+++--. +..++.+..
T Consensus 16 di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~gvLl~GppGtGKT~la~aia~~~-----~~~~~~i~~ 82 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKG 82 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT-----TCEEEEECH
T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEEH
T ss_conf 9478699999999999998749999986799988637887999998899999999994-----997699887
No 396
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=54.00 E-value=4.8 Score=17.96 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+.|.+.-|+|||+++..+.
T Consensus 7 iI~i~G~sGsGKSTva~~La 26 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp EEEEECCC----CHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999998834999999999
No 397
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=54.00 E-value=5.8 Score=17.43 Aligned_cols=20 Identities=30% Similarity=0.327 Sum_probs=17.8
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 24776148867889999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~ 97 (367)
+|+++.+..|+|||+++..+
T Consensus 19 ~Ki~lvG~~~vGKTsLi~~l 38 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRL 38 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 89999999999889999798
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=53.93 E-value=8.5 Score=16.39 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 47761488678899999999999970899
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPG 107 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~ 107 (367)
-+.+.+.-|+|||+++..++--+-..+.+
T Consensus 7 ~I~l~G~~GsGKSTia~~La~~L~~~~~~ 35 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIP 35 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99988999989999999999997445887
No 399
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=53.80 E-value=5.8 Score=17.41 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=23.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 247761488678899999999999970899779997153
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t 116 (367)
+.++|.++=|+|||+++..+.-+ -+..+++..|.
T Consensus 21 ~~I~IeG~~GsGKST~~~~L~~~-----l~~~~~~~ep~ 54 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPV 54 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH-----CCCCEEEECCC
T ss_conf 39998899987689999999986-----58966996878
No 400
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=53.49 E-value=9 Score=16.25 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.1
Q ss_pred EEEEEEECCCCCCHHHHHHHH
Q ss_conf 124776148867889999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~ 97 (367)
-+|+.|.+-.|+|||+++..+
T Consensus 16 ~~kI~vvG~~~~GKTsLi~~l 36 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQL 36 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHH
T ss_conf 879999999999899999999
No 401
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3add_A* 3adc_A* 3adb_A*
Probab=53.44 E-value=9.2 Score=16.21 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 47761488678899999999999970899
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPG 107 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~ 107 (367)
=+.+.+.=|+|||+++..+.-.+-....+
T Consensus 6 LIil~G~PGSGKST~A~~L~~~l~~~~~~ 34 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNID 34 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99988999998899999999999852999
No 402
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.41 E-value=9.2 Score=16.21 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=23.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 124776148867889999999999997089977999715
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
...+.+.++-|+|||+++-.++- .-+..++-+-.
T Consensus 77 ~~~lLL~GPpG~GKTTla~~lAk-----elg~~vieiNa 110 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQ-----ELGYDILEQNA 110 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH-----HTTCEEEEECT
T ss_pred CCEEEEECCCCHHHHHHHHHHHH-----HHCCCEEEEEC
T ss_conf 87799989997039999999999-----81999899717
No 403
>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase, ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=53.21 E-value=8.4 Score=16.44 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 47761488678899999999999970899779997
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
-+.+.++-|+|||+.+..++--+ +...+.+
T Consensus 11 iI~i~G~pGSGKsT~a~~La~~~-----g~~~is~ 40 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY-----GYTHLST 40 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH-----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCCEECC
T ss_conf 89998999998799999999987-----9954722
No 404
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=52.95 E-value=9.3 Score=16.16 Aligned_cols=44 Identities=18% Similarity=0.032 Sum_probs=30.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 77614886788999999999999708997799971537999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~ 123 (367)
++|-+.=|+|||+.+..+.-++-...-...+.+--|......+.
T Consensus 30 IvieG~dGsGKSTq~~~L~~~L~~~g~~~~~~~~ep~~~~~~~~ 73 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEK 73 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 99989998849999999999999669985998249899824899
No 405
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=52.87 E-value=9.3 Score=16.15 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 477614886788999999999999708997799971
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
|+.+.+.-|+|||+++...+.-.+...++..++++-
T Consensus 30 ~~~i~G~~~sGKTtlaL~~~a~~~~q~~g~~v~yiD 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 499988998879999999999999858993899997
No 406
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=52.61 E-value=9.4 Score=16.13 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=19.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.++++|.+....|||+++-+++
T Consensus 24 ~P~I~VvG~~ssGKSsliNaLl 45 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHH
T ss_conf 8859999188896999999996
No 407
>1ii8_A RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=52.58 E-value=9.4 Score=16.12 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 7761488678899999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~ 98 (367)
..|.+..|+|||++..++.
T Consensus 26 ~~i~G~NGsGKStil~Ai~ 44 (195)
T 1ii8_A 26 NLIIGQNGSGKSSLLDAIL 44 (195)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHH
T ss_conf 8998889998200877467
No 408
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=52.51 E-value=8.6 Score=16.38 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-++|.+.-|+|||++...+.
T Consensus 34 i~~ivG~sGsGKSTLl~~i~ 53 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999799975999999997
No 409
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics, joint center for structural genomics, JCSG; 2.10A {Thermotoga maritima MSB8} SCOP: c.37.1.12
Probab=52.17 E-value=7.5 Score=16.74 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 7761488678899999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~ 98 (367)
+++.++.|.|||++.-.++
T Consensus 44 ~gllGpNGaGKSTLlk~i~ 62 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998999988999999996
No 410
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=52.02 E-value=9.6 Score=16.07 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
.++|.+.-|+|||++...++=
T Consensus 49 ~vaivG~sGsGKSTLl~li~G 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999829999999857
No 411
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=51.84 E-value=7.7 Score=16.69 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+++.+.-|+|||++.-++.
T Consensus 52 i~~iiG~sGsGKSTLl~~i~ 71 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998899998999977871
No 412
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens}
Probab=51.80 E-value=9.7 Score=16.05 Aligned_cols=43 Identities=21% Similarity=0.023 Sum_probs=27.8
Q ss_pred HHHHHHHHHH---HHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999999888---8751245555541124776148867889999999999
Q gi|254781187|r 54 WQLEFMEAVD---VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 54 wq~~~l~~~~---~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw 100 (367)
.|.++-++.+ +.++.+.-. | ..+...++.|+|||.++-+++--
T Consensus 41 Gq~~a~~a~~~~~~~i~~~k~~--~--k~iLl~GPpGtGKT~iAralA~~ 86 (456)
T 2c9o_A 41 GQENAREACGVIVELIKSKKMA--G--RAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCT--T--CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCC--C--CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8899999999999999839966--8--77999899997799999999997
No 413
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=51.73 E-value=9.7 Score=16.05 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
-+++.+.-|+|||++.-+++=
T Consensus 26 ~~~iiGpsGsGKSTllr~i~G 46 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999997999819999999972
No 414
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* 2a5g_A* 2w83_A*
Probab=51.41 E-value=9.9 Score=16.01 Aligned_cols=20 Identities=20% Similarity=0.131 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
|+.|.+--|+|||.++..++
T Consensus 2 Ki~ivG~~~vGKTsLi~~~~ 21 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999999988899999996
No 415
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii OT3} SCOP: c.37.1.8
Probab=50.82 E-value=10 Score=15.95 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
|..+++.+.-++|||+++-.+.
T Consensus 1 ~~~I~lvG~~n~GKStLin~L~ 22 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9889998999986999999996
No 416
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling protein; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=50.46 E-value=9.9 Score=16.00 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHH
Q ss_conf 842899999998888751245555541124776148867889999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~ 97 (367)
...+.+.+-=++|...++........ ..|+.+.++-++|||++.--+
T Consensus 7 ~~~~~a~~~s~~Id~~L~~~~~~~~~-~~klLLLG~geSGKST~~KQm 53 (362)
T 1zcb_A 7 AEDKAAVERSKMIDRNLREDGERSAR-LVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp ------------------------CC-CEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHHHHH
T ss_conf 88899998779999999997987408-684988789987489999999
No 417
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A
Probab=49.79 E-value=9.4 Score=16.14 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+++.++-|+|||++.-.+.
T Consensus 32 ~~~iiGpsGsGKSTLl~~i~ 51 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999984999999997
No 418
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=49.65 E-value=11 Score=15.84 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 4776148867889999999999997089977999715379
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~ 118 (367)
-+.|.++-|+|||+++..++.-. ..+ +..++++-|+..
T Consensus 55 H~lI~G~TGsGKT~~l~~ll~~~-~~~-g~~~iviDpkge 92 (437)
T 1e9r_A 55 HLLVNGATGTGKSVLLRELAYTG-LLR-GDRMVIVDPNGD 92 (437)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHH-HHT-TCEEEEEEETTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHC-CCCEEEEECCCH
T ss_conf 78998169986899999999999-868-998899979836
No 419
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=49.63 E-value=9.5 Score=16.11 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
.++|.+.-|+|||++...++
T Consensus 418 ~vaivG~sGsGKSTLl~ll~ 437 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQ 437 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998999865679999874
No 420
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=49.59 E-value=11 Score=15.84 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=23.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHH
Q ss_conf 7761488678899999999999970899779997--15379999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTL 124 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~--A~t~~Q~~~~l 124 (367)
+.|++.-|+|||+++--++.-.+.. +.++++. .-+..++...+
T Consensus 200 ~viaarpg~GKT~~al~la~~~~~~--g~~v~~~SlEMs~~el~~R~ 244 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMGKKENIKRL 244 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSCTTHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCC--CCCHHCCHHHCCHHHHHHHH
T ss_conf 9985079987479999999975312--55131051417887999999
No 421
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=49.24 E-value=11 Score=15.80 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 7761488678899999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~ 98 (367)
.+|.+..|+|||.+.-++.
T Consensus 29 ~~I~G~NGsGKSsildAi~ 47 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHH
T ss_conf 7999999997214767778
No 422
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=48.69 E-value=11 Score=15.75 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 7761488678899999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
+.|.++-|+|||+++..++-.+
T Consensus 7 Ivi~GpsGsGK~Tl~~~L~~~~ 28 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999858
No 423
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP PSI; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=48.40 E-value=11 Score=15.72 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
-+.|.++-|+|||+++..++-
T Consensus 14 ~Ivl~GpsGsGK~tl~~~L~~ 34 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 189999999999999999997
No 424
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=47.75 E-value=11 Score=15.66 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=10.9
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 77614886788999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~l 99 (367)
++|.++.|+|||.++-.++-
T Consensus 10 i~i~GpTasGKT~la~~LA~ 29 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989771358999999999
No 425
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=47.38 E-value=11 Score=15.62 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 7761488678899999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~ 98 (367)
.+|.+..|+|||++.-++.
T Consensus 26 ~vi~G~Ng~GKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHH
T ss_conf 9999999997437999999
No 426
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=47.03 E-value=12 Score=15.59 Aligned_cols=16 Identities=6% Similarity=-0.153 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 8999999988887512
Q gi|254781187|r 53 RWQLEFMEAVDVHCHS 68 (367)
Q Consensus 53 ~wq~~~l~~~~~~~~~ 68 (367)
.|+.++...|.+-..+
T Consensus 76 ~f~~~a~~~i~~i~~r 91 (322)
T 3exa_A 76 DFQDLATPLITEIHER 91 (322)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 8787899999999976
No 427
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer, structural genomics; 2.80A {Thermus thermophilus HB8}
Probab=47.01 E-value=12 Score=15.59 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=35.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 47761488678899999999999970899779997153799999999999999986231
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~~~ 137 (367)
++|=. -.|=|||-.++..+.-.+++..+. -+||+|.+=--||.-| ....++.+-.
T Consensus 95 ~iaEM-~TGEGKTLvatl~a~lnAL~GkgV-hvVTvNdYLA~RDae~--m~~iy~~LGl 149 (997)
T 2ipc_A 95 KIAEM-KTGEGKTLVATLAVALNALTGKGV-HVVTVNDYLARRDAEW--MGPVYRGLGL 149 (997)
T ss_dssp SEEEC-CSTHHHHHHHHHHHHHHHTTCSCC-EEEESSHHHHHHHHHH--HHHHHHTTTC
T ss_pred CEEEE-ECCCCHHHHHHHHHHHHHHCCCCE-EEEECCHHHHHHHHHH--HHHHHHHHCC
T ss_conf 35776-368979999999999997279974-9996388888988999--9999998197
No 428
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=46.85 E-value=12 Score=15.57 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=24.0
Q ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 477614-8867889999999999997089977999715
Q gi|254781187|r 79 KCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 79 ~~~v~s-grg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
-+-|++ +-|+|||++++.++..+.- .+.+|.+.-|
T Consensus 28 ~lfItGT~TgVGKT~Vs~~L~~aL~~--~G~~V~~~KP 63 (251)
T 3fgn_A 28 ILVVTGTGTGVGKTVVCAALASAARQ--AGIDVAVCKP 63 (251)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHH--TTCCEEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH--CCCEEEEECC
T ss_conf 68998699996199999999999996--8994999774
No 429
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=46.72 E-value=12 Score=15.56 Aligned_cols=49 Identities=14% Similarity=-0.002 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCC-----CCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 668428999999988887512455-----5554112477614886788999999999
Q gi|254781187|r 48 FSQPHRWQLEFMEAVDVHCHSNVN-----NSNPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 48 ~~~p~~wq~~~l~~~~~~~~~~~~-----~~~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
.-|-+.. .+.|+++-+++.+... ...| .-+.+.++.|+|||+++-.++-
T Consensus 14 i~G~~~~-k~~l~e~v~~l~~~~~~~~~g~~~~--~giLL~GppGtGKT~la~aia~ 67 (257)
T 1lv7_A 14 VAGCDEA-KEEVAELVEYLREPSRFQKLGGKIP--KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp SCSCHHH-HHHTHHHHHHHHCGGGC-----CCC--CEEEEECCTTSCHHHHHHHHHH
T ss_pred HCCHHHH-HHHHHHHHHHHHCHHHHHHCCCCCC--CEEEEECCCCCCHHHHHHHHHH
T ss_conf 5456999-9999999999879999997599999--7467568999887799999998
No 430
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=46.60 E-value=11 Score=15.71 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 4776148867889999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~ 97 (367)
-+++.+.-|+|||+++..+
T Consensus 36 ~v~i~G~SG~GKStl~l~l 54 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALEL 54 (205)
T ss_dssp EEEEECCCTTTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999828999989999999
No 431
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C*
Probab=46.45 E-value=12 Score=15.53 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHH
Q ss_conf 2899999998888751245555541124776148867889999999
Q gi|254781187|r 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 52 ~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~ 97 (367)
.+.|.+.=++|...++........ ..|+.+.++-++|||++.--+
T Consensus 16 ~~~a~~~s~~Id~~l~~e~~~~~~-~~KlLLLG~geSGKSTi~KQ~ 60 (402)
T 1azs_C 16 EKAQREANKKIEKQLQKDKQVYRA-THRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp --------------------CCTT-EEEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHH
T ss_conf 999999899999999996985458-886986789988799999999
No 432
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=46.29 E-value=12 Score=15.52 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+++.+.-|+|||++.-+++
T Consensus 39 ~~~llGpsGsGKSTll~~ia 58 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999985999999997
No 433
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genomics consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum 3D7}
Probab=46.28 E-value=7.2 Score=16.86 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 77614886788999999999999708997799971
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
+.|.++-|+||++++-.++- .+|+.-..++.
T Consensus 26 IVl~GPSGsGK~tL~~~L~~----~~p~~~~~~v~ 56 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLN----EFPNYFYFSVS 56 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHH----HSTTTEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHH----HCCCCEEEEEE
T ss_conf 99999999999999999997----19877673246
No 434
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=46.20 E-value=12 Score=15.51 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9999999888875124555554112477614886788999999999
Q gi|254781187|r 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 54 wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
.|+++.+.+..-..... .+.+.+..|+|||.++-.+.-
T Consensus 45 GQ~~a~~~~~~Aa~~~~--------~llL~GpPGtGKT~lAr~ia~ 82 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKR--------HVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp SCHHHHHHHHHHHHTTC--------CEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCC--------CEEEECCCCCHHHHHHHHHHH
T ss_conf 88999999999606799--------689989998119999999997
No 435
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=46.19 E-value=11 Score=15.79 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+++.+..|.|||++.-.+.
T Consensus 34 i~~liGpNGaGKSTll~~i~ 53 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999984999999997
No 436
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal aldimine, schiff base; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A*
Probab=46.16 E-value=12 Score=15.51 Aligned_cols=72 Identities=8% Similarity=-0.070 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf 842899999998888751245555541124776148867889999999999997089977999715379999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~l 124 (367)
+|-..=.++-++|++++.+........- ++++. .++|-+...+..++-...+.|+-+|++..|++.....++
T Consensus 67 ~p~~G~~elR~aia~~~~~~~~~~~~~~-~i~~~--~~~~~~~~~~l~~~~~~~~~pgd~vlv~~P~y~~y~~~~ 138 (397)
T 3fsl_A 67 LPMEGLNCYRHAIAPLLFGADHPVLKQQ-RVATI--QTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIF 138 (397)
T ss_dssp CCTTCCHHHHHHHHHHHHCTTCHHHHTT-CEEEE--EESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCC-EEEEE--CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH
T ss_conf 9977589999999999852369766655-38983--475168899999999875179980586488875218999
No 437
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi}
Probab=45.97 E-value=12 Score=15.49 Aligned_cols=20 Identities=30% Similarity=0.307 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+++.+..|+|||+++..+.
T Consensus 119 ~vgLvG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999899986999999996
No 438
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=45.93 E-value=12 Score=15.48 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 776148867889999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw 100 (367)
+-+-++.|+|||++..+++.-
T Consensus 39 l~L~G~~GsGKTHLl~a~~~~ 59 (149)
T 2kjq_A 39 IYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEESSSTTTTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999889999999999
No 439
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=45.72 E-value=12 Score=15.46 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
.+.+.++-|+|||+.+..++--+
T Consensus 6 ~Ivl~G~PGSGK~T~a~~Lae~~ 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999986
No 440
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=45.61 E-value=11 Score=15.70 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+++.+..|.|||++.-.+.
T Consensus 35 i~gliGpnGaGKSTL~~~i~ 54 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999986999999997
No 441
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=45.50 E-value=11 Score=15.65 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+++.+.-|+|||++...++
T Consensus 371 ~~~ivG~sGsGKSTLlkll~ 390 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHC
T ss_conf 99998999984999999980
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=45.42 E-value=12 Score=15.44 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=8.4
Q ss_pred EEECCCCCCHHHHHHHH
Q ss_conf 76148867889999999
Q gi|254781187|r 81 AISAGRGIGKTTLNAWM 97 (367)
Q Consensus 81 ~v~sgrg~GKS~~~a~~ 97 (367)
.+.+.=|+|||+++..+
T Consensus 6 il~G~pGSGKST~a~~L 22 (301)
T 1ltq_A 6 LTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
T ss_conf 99998999799999999
No 443
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=44.87 E-value=12 Score=15.38 Aligned_cols=35 Identities=14% Similarity=-0.064 Sum_probs=23.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 77614886788999999999999708997799971537
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~ 117 (367)
+++.+.=|+|||+++..+.-++-. .+. .++..|..
T Consensus 7 I~ieG~dGsGKtT~~~~L~~~l~~--~~~-~~~~~p~~ 41 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPA--NTI-KYLNFPQR 41 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCG--GGE-EEEESSCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCC-EEEEECCC
T ss_conf 999899888599999999999846--899-89998999
No 444
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=44.81 E-value=13 Score=15.38 Aligned_cols=26 Identities=0% Similarity=-0.063 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99975455998899998987406988
Q gi|254781187|r 195 VFNDEASGTPDIINKSILGFFTELNP 220 (367)
Q Consensus 195 ~ivDEAsgI~d~i~e~i~g~Lt~~~~ 220 (367)
+++||....+...-+.+...+.....
T Consensus 80 L~i~ei~~L~~~~Q~~L~~~l~~~~~ 105 (145)
T 3n70_A 80 LVLSHPEHLTREQQYHLVQLQSQEHR 105 (145)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHSSSC
T ss_pred EEECCHHHCCHHHHHHHHHHHHCCCE
T ss_conf 99527465999999999860220524
No 445
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=44.66 E-value=13 Score=15.36 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCC---CCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 36668428999999988887512455---5554112477614886788999999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVN---NSNPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~---~~~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
..+.|.+.....+.+.|.-.+.+... ...| ..-+.+.++.|+|||.++-+++-
T Consensus 12 ~dI~Gl~~~k~~l~e~i~~pl~~~~~~~~~~~p-~~gvLL~GPpGtGKT~la~aiA~ 67 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTP-WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCC-CSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHCCCCCC-CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 994575999999999999997399987279999-98168889899988999999999
No 446
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=44.48 E-value=13 Score=15.35 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 45723378999975232012598888554301466888443666842899999998888751245
Q gi|254781187|r 6 STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 (367)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~~~~~~~~~~p~~wq~~~l~~~~~~~~~~~ 70 (367)
-|.+.+.+++ ..++|+...|+. + -+.|+ ...|+.++...|.+-..+|.
T Consensus 45 ~TaK~t~~E~------~~vpHhli~~~~----~------~~~~~-v~~F~~~a~~~i~~i~~rgk 92 (409)
T 3eph_A 45 ITNKHPLQER------EGIPHHVMNHVD----W------SEEYY-SHRFETECMNAIEDIHRRGK 92 (409)
T ss_dssp TTTCCCGGGT------TTCCEESCSCBC----T------TSCCC-HHHHHHHHHHHHHHHHTTTC
T ss_pred EECCCCHHHH------HCCCEEEECCCC----C------CCCCC-HHHHHHHHHHHHHHHHHCCC
T ss_conf 7789999999------189960352448----9------98737-99999999999999986289
No 447
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, cytoplasm, nucleotide- binding, hydrolase; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=44.25 E-value=13 Score=15.33 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 47761488678899999999999970899779997153
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t 116 (367)
-+.+.++.|+|||.++-+++-.. +..++.+..+
T Consensus 53 giLL~GppGtGKT~la~~iA~~~-----~~~~~~i~~s 85 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET-----NATFIRVVGS 85 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT-----TCEEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-----CCCEEEEEHH
T ss_conf 57887989998779999999980-----9986898889
No 448
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=44.24 E-value=11 Score=15.64 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4776148867889999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw 100 (367)
++++.+.-|+|||++...+.=.
T Consensus 371 ~i~ivG~sGsGKSTLl~lL~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCHHHHHHHHHCCC
T ss_conf 8999779985688999976178
No 449
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=43.69 E-value=13 Score=15.27 Aligned_cols=53 Identities=13% Similarity=-0.005 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCC--CCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 666842899999998888751245--55554112477614886788999999999
Q gi|254781187|r 47 HFSQPHRWQLEFMEAVDVHCHSNV--NNSNPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 47 ~~~~p~~wq~~~l~~~~~~~~~~~--~~~~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
...|.+....++-+.|.-.+.+.. ......-.-+.+.++-|+|||.++-+++-
T Consensus 22 di~G~~~~k~~l~e~v~~~~~~~~~~~~~~~p~~giLL~GPpGtGKT~la~aiA~ 76 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8638999999999999957509998934999982488889699749999999985
No 450
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=43.22 E-value=13 Score=15.23 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=24.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4776148867889999999999997089977999715
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~ 115 (367)
-+.+.+.-|+|||.++.-++.-.+.... .++++++.
T Consensus 32 ~~~i~G~~G~GKT~l~~~~~~~~~~~~~-~~v~~~s~ 67 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYG-EPGVFVTL 67 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHC-CCEEEEES
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCC-CCEEEECC
T ss_conf 9999978999989999999999999649-97124247
No 451
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560}
Probab=43.16 E-value=13 Score=15.22 Aligned_cols=23 Identities=17% Similarity=0.058 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
-++|.+.-|+|||+++-.++--+
T Consensus 8 iI~I~g~~GsGKstiak~LA~~L 30 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 89866999998699999999995
No 452
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PSI-2, protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=42.90 E-value=13 Score=15.20 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 7761488678899999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
..+.+.-|+|||+++..++-.+
T Consensus 8 ~Ll~G~PGtGKT~~a~~la~~l 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCHHHHHHHHHHHHH
T ss_conf 9998999970999999999996
No 453
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A*
Probab=42.86 E-value=13 Score=15.19 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=33.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 477614886788999999999999708997799971537999999999999999862
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ei~k~~~~~ 135 (367)
-+.+.+..|+|||+.+|=++.++... .....++++-|++-+- ...++.|.+.+
T Consensus 100 i~~lvG~~G~GKTTt~aKLA~~~~~~-g~kv~li~~Dt~R~~A---~eQL~~~a~~~ 152 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAA---REQLRLLGEKV 152 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCHHH---HHHHHHHHHHH
T ss_pred EEEEECCCCCCCEEHHHHHHHHHHHC-CCEEEEEECCCCCCCH---HHHHHHHHHHC
T ss_conf 99996778898521199999999877-9844577414555338---99999999864
No 454
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=42.76 E-value=13 Score=15.18 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=18.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
..++++.+..++|||++...+.
T Consensus 7 ~~~I~ivG~~~~GKTsLl~~l~ 28 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 8989999899988899999997
No 455
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=42.32 E-value=14 Score=15.14 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=10.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 7761488678899999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~ 98 (367)
++|.++.|+|||.++-.++
T Consensus 8 i~I~GpTasGKt~la~~lA 26 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998977116999999999
No 456
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=42.24 E-value=14 Score=15.13 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=29.0
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 12477614886788999999999999708997799971537999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~ 120 (367)
.+.+++.+.-|+|||++.-.++-... ...++.++++...+-
T Consensus 38 ~~~V~ivG~pnaGKSTLln~L~~~~~---~~~~v~~v~~d~~~~ 78 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK---DKYKIACIAGDVIAK 78 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT---TTCCEEEEEEETTTH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---CCCCEEEEECCCCEE
T ss_conf 84999988999989999999999840---366068884564201
No 457
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5}
Probab=42.23 E-value=14 Score=15.13 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=24.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 77614886788999999999999708997799971
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
++|.++=|+|||+++..+.-++-.. +..++++.
T Consensus 3 I~ieG~~GsGKsT~~~~L~~~L~~~--g~~v~~~~ 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQK--GYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEE
T ss_conf 9998899898999999999999877--99489986
No 458
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=42.03 E-value=14 Score=15.11 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
.++|-+.=|+|||+++..+.-++
T Consensus 4 fI~iEG~~GsGKST~~~~L~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999884999999999998
No 459
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=41.93 E-value=14 Score=15.10 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=8.4
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 776148867889999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~ 97 (367)
++|.++.|+|||.++-.+
T Consensus 13 i~I~GpTasGKs~La~~l 30 (316)
T 3foz_A 13 IFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999898832799999999
No 460
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=41.48 E-value=14 Score=15.06 Aligned_cols=18 Identities=22% Similarity=0.702 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 776148867889999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~ 97 (367)
.++.+.-|+|||+++..+
T Consensus 168 sv~~G~SGVGKSSLIN~L 185 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRL 185 (302)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHC
T ss_conf 999898996787887613
No 461
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=41.11 E-value=14 Score=15.03 Aligned_cols=20 Identities=35% Similarity=0.316 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+++.+.-|+|||++.-+++
T Consensus 32 ~~~ilGpsGsGKSTllr~i~ 51 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999864999999997
No 462
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=40.82 E-value=14 Score=15.00 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=16.9
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 24776148867889999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWM 97 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~ 97 (367)
.|+.+.+--|+|||+++-.+
T Consensus 23 ~~I~l~G~tg~GKSsl~N~l 42 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSI 42 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 38999918998399999999
No 463
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=40.76 E-value=14 Score=14.99 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 477614886788999999999999708997799971
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
-+.+.++.|+|||.++-.++-- .+..++.+.
T Consensus 46 giLL~GppGtGKT~la~aia~~-----~~~~~~~~~ 76 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE-----SGLNFISVK 76 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH-----TTCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH-----HCCCEEEEE
T ss_conf 2688789998862899999998-----278718976
No 464
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=40.68 E-value=14 Score=14.99 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 999998888751245555541124776148867889999999999997089977999715379
Q gi|254781187|r 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 (367)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~ 118 (367)
.++-+.++..+.+...+. + --+...+.=|+|||+++-.++--+ +.+--+++||+.
T Consensus 15 ~~lg~~la~~l~~~~~~~-g--~ii~L~G~LGaGKTtf~r~i~~~l-----g~~~~V~SPTF~ 69 (158)
T 1htw_A 15 LRFGKKFAEILLKLHTEK-A--IMVYLNGDLGAGKTTLTRGMLQGI-----GHQGNVKSPTYT 69 (158)
T ss_dssp HHHHHHHHHHHHHHCCSS-C--EEEEEECSTTSSHHHHHHHHHHHT-----TCCSCCCCCTTT
T ss_pred HHHHHHHHHHHHHCCCCC-C--EEEEEECCCCCCHHHHHHHHHHHH-----CCCCCCCCCCEE
T ss_conf 999999999987516899-8--499998898688999999999982-----766667898334
No 465
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=40.67 E-value=14 Score=14.98 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
.+++.+.-|+|||++.-.++-
T Consensus 43 ~~~llGpsGsGKSTllr~iaG 63 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999998459999999975
No 466
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=40.63 E-value=15 Score=14.98 Aligned_cols=20 Identities=10% Similarity=0.388 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 77614886788999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~l 99 (367)
+.+.++-|+|||++...++-
T Consensus 8 ivi~GpSG~GK~tl~~~L~~ 27 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999998998999999997
No 467
>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding cassette, transport protein; HET: ADP; 2.30A {Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A
Probab=40.63 E-value=15 Score=14.98 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+++.++-|.|||++.-+++
T Consensus 31 ~~~llGpsG~GKSTllr~ia 50 (381)
T 2awn_A 31 FVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999982999999997
No 468
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=40.60 E-value=15 Score=14.98 Aligned_cols=21 Identities=24% Similarity=0.101 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
-++|.+.-|+|||++.-.++-
T Consensus 31 ~~~i~GpsGsGKsTll~~i~G 51 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999649999999973
No 469
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) class, TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8}
Probab=40.35 E-value=15 Score=14.95 Aligned_cols=21 Identities=29% Similarity=0.161 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
-+++.+.-|+|||++.-+++=
T Consensus 31 ~~~llGpsGsGKsTll~~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999869999999975
No 470
>1wst_A MSAT, multiple substrate aminotransferase; alpha and beta; HET: PLP; 1.95A {Thermococcus profundus} SCOP: c.67.1.1 PDB: 1x0m_A
Probab=39.93 E-value=15 Score=14.91 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHC--CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 9999988887512--4555554112477614886788999999999999708997799971537999999
Q gi|254781187|r 56 LEFMEAVDVHCHS--NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 (367)
Q Consensus 56 ~~~l~~~~~~~~~--~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~ 123 (367)
.++-++|+++..+ +...+ ++ .+.|.+| ...+..++-.+++.|+..|++..|++......
T Consensus 86 ~~LR~aia~~~~~~~g~~~~-~~--~I~it~G------~~~al~~~~~~l~~~Gd~Vl~~~P~y~~~~~~ 146 (417)
T 1wst_A 86 TPLRLALARWMEKRYDIPMS-KV--EIMTVAG------SQQALDLIGRVFLNPGDPIVVEAPTYLAAIQA 146 (417)
T ss_dssp HHHHHHHHHHHHHHHCCCCT-TC--EEEEESS------HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCC-HH--EEEECCC------HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHH
T ss_conf 99999999999998688998-41--1998578------89999999999569998688679863035789
No 471
>1um8_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori 26695} SCOP: c.37.1.20
Probab=39.01 E-value=15 Score=14.83 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 477614886788999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~l 99 (367)
.+...++-|+|||.++-.++-
T Consensus 74 niLflGPTGvGKTElAk~LAk 94 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 157669897779999999986
No 472
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=38.92 E-value=15 Score=14.82 Aligned_cols=25 Identities=20% Similarity=0.140 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 2477614886788999999999999
Q gi|254781187|r 78 FKCAISAGRGIGKTTLNAWMMLWLI 102 (367)
Q Consensus 78 ~~~~v~sgrg~GKS~~~a~~~lw~~ 102 (367)
..++|-++=|+|||+++..++--+-
T Consensus 17 i~IaIDGPagsGKsT~Ak~LAk~lg 41 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 3899889997788999999999939
No 473
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=38.71 E-value=16 Score=14.80 Aligned_cols=34 Identities=21% Similarity=0.047 Sum_probs=23.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 77614886788999999999999708997799971537
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~ 117 (367)
+++-+.=|+|||+.+..+.-++- . ...++.-|..
T Consensus 8 IviEGidGsGKST~~~~L~~~L~---~-~~~~~~~p~~ 41 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQ---P-NCKLLKFPER 41 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHC---S-SEEEEESSCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---C-CCEEEEECCC
T ss_conf 99989988849999999999997---1-9889997899
No 474
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell membrane, GTP-binding, ION transport; 2.50A {Legionella pneumophila}
Probab=38.54 E-value=16 Score=14.78 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=18.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHH
Q ss_conf 1247761488678899999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
|.|+++.+--.+|||+++-.++
T Consensus 1 ~~~v~lvG~pNvGKSTL~N~L~ 22 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALT 22 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9879998999965999999995
No 475
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20
Probab=38.49 E-value=12 Score=15.52 Aligned_cols=41 Identities=15% Similarity=0.040 Sum_probs=29.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCC-------------CCEEEEEEECCCCC
Q ss_conf 289997545599889999898740698-------------82589998078999
Q gi|254781187|r 193 MAVFNDEASGTPDIINKSILGFFTELN-------------PNRFWIMTSNTRRL 233 (367)
Q Consensus 193 ~l~ivDEAsgI~d~i~e~i~g~Lt~~~-------------~~~~~i~igNP~r~ 233 (367)
-++++||..-.+..+-+++.-.|-++. .+...++..||...
T Consensus 146 gvl~lDEi~~~~~~~~~aLle~mee~~v~i~r~g~~~~~P~~~~liaa~Np~~~ 199 (350)
T 1g8p_A 146 GYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG 199 (350)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC
T ss_pred CEEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEECCCCCEEEEECCCCCCC
T ss_conf 752245565530889999986641686675688726547876699832567777
No 476
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=38.08 E-value=16 Score=14.74 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 7761488678899999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~ 98 (367)
+.|.++-|+|||++.-.++
T Consensus 9 ivi~GpsGsGK~tl~~~L~ 27 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999999999999998
No 477
>3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome, procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo sapiens}
Probab=37.93 E-value=16 Score=14.72 Aligned_cols=54 Identities=19% Similarity=0.097 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH---HHHHHCCCCEEEE
Q ss_conf 999999888875124555554112477614886788999999999---9997089977999
Q gi|254781187|r 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML---WLISTRPGMSIIC 112 (367)
Q Consensus 55 q~~~l~~~~~~~~~~~~~~~~~~~~~~v~sgrg~GKS~~~a~~~l---w~~~~~~~~~v~~ 112 (367)
..+.+..|.+.++..... ..-|+|.+.=|+|||++++.++- -.-..+++....+
T Consensus 135 R~~~~~~i~~~l~~~~~~----~~~v~i~G~~G~GKT~La~~~~~~~~~~~~~f~~~~~w~ 191 (1263)
T 3iyt_A 135 RKKLVNAIQQKLSKLKGE----PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWV 191 (1263)
T ss_dssp CHHHHHHHHHHHTTSTTS----CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCCC----EEEEEEECCCCCCHHHHHHHHHHCHHHHHHCCCCCEEEE
T ss_conf 699999999997643898----469999989863399999999967687862289808999
No 478
>2wsm_A Hydrogenase expression/formation protein (HYPB); hydrogenase maturation factor, metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=37.82 E-value=16 Score=14.71 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=28.0
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 12477614886788999999999999708997799971537999999
Q gi|254781187|r 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 (367)
Q Consensus 77 ~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~ 123 (367)
...+++.+.-|+|||+++..++-.. +...++.++++......+.
T Consensus 30 ~~~V~ivG~pnaGKSTLln~L~~~~---~~~~~~~~~~~~~~~~~d~ 73 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI---GNEVKIGAMLGDVVSKADY 73 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH---TTTSCEEEEECSCCCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HCCCCEEEEECCCCCCHHH
T ss_conf 8499988899998999999999886---1467356752577653134
No 479
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=37.71 E-value=16 Score=14.70 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------HCCCCEEEEECC--CHHHHHHH
Q ss_conf 4776148867889999999999997--------089977999715--37999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLIS--------TRPGMSIICIAN--SETQLKNT 123 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~--------~~~~~~v~~~A~--t~~Q~~~~ 123 (367)
-+.|.+.-|+|||+++..++.-.+. ..++.+|+++.. +..+++..
T Consensus 32 ~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~Vlyi~~E~~~~~i~~R 86 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHR 86 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCHHHHHHH
T ss_conf 8999808989899999999999975996346433478637998356789999999
No 480
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 3k0c_A* 3k0f_A*
Probab=37.41 E-value=16 Score=14.67 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 7761488678899999999999970899779997
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
+.|.+.-|+|||.++.-++.-.+.. .+.+++++
T Consensus 42 ~lI~G~pGsGKT~la~q~l~~~~~~-~ge~vlyi 74 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFV 74 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH-CCCEEEEE
T ss_conf 9999389988999999999999986-79859999
No 481
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=37.31 E-value=16 Score=14.66 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHCCCC-CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 999988887512455-5554112477614886788999999999999708997799971537999999
Q gi|254781187|r 57 EFMEAVDVHCHSNVN-NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 (367)
Q Consensus 57 ~~l~~~~~~~~~~~~-~~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~ 123 (367)
++-++|+++..+..+ ...|+ ..+.|.+|-. .+..++-..++.|+-.|++..|++......
T Consensus 79 ~LR~aia~~~~~~~g~~~~~~-~~i~vt~G~~------~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~ 139 (412)
T 2x5d_A 79 RLRRAISHWYRDRYDVQIDPE-SEAIVTIGSK------EGLAHLMLATLDHGDTILVPNPSYPIHIYG 139 (412)
T ss_dssp HHHHHHHHHHHHHHCCCCCTT-TSEEEESCHH------HHHHHHHHHHCCTTCEEEEEESCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCC-CEEEEECCHH------HHHHHHHHHHHCCCCEEEECCCCCHHHHHH
T ss_conf 999999999998539878966-5799958759------999999999847979999907976468999
No 482
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=37.13 E-value=16 Score=14.64 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=29.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHH
Q ss_conf 77614886788999999999999708997799971--5379999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTL 124 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A--~t~~Q~~~~l 124 (367)
+.|.++-|+|||+++..++++.+. +.+.+|++.+ -+..++...+
T Consensus 203 ~vi~a~pg~GKT~~~~~~a~~~a~-~~g~~v~~~slEm~~~~~~~r~ 248 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSSCHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHH
T ss_conf 999830466621888878999999-7799499985889999999999
No 483
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=36.57 E-value=17 Score=14.59 Aligned_cols=27 Identities=30% Similarity=0.122 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 477614886788999999999999708
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTR 105 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~ 105 (367)
-++|-++=|+|||+++-.++--+-+.+
T Consensus 7 IIaIDGPagSGKST~ak~LA~~Lg~~~ 33 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHL 33 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 899778986788999999999919976
No 484
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
Probab=36.57 E-value=17 Score=14.59 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=33.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHH
Q ss_conf 4776148867889999999999997-089977999715379999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTL 124 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~-~~~~~~v~~~A~t~~Q~~~~l 124 (367)
+..=.|--|.||+...|.-++-... .-|....+|.||+..-++.++
T Consensus 160 nmigqsqsgtgktaafaltmlsrvdasvpkpqaiclapsrelarqim 206 (508)
T 3fho_A 160 NMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIM 206 (508)
T ss_dssp CEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHH
T ss_conf 43064658885159999999986225799974477477399999999
No 485
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=36.38 E-value=17 Score=14.57 Aligned_cols=41 Identities=24% Similarity=0.114 Sum_probs=27.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 77614886788999999999999708997799971537999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~ 120 (367)
++|-+.=|+|||+.+..+.-++........++.--|.....
T Consensus 6 I~ieG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~~p~~~~~ 46 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQL 46 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
T ss_conf 99889999889999999999999779975998419699728
No 486
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=36.38 E-value=17 Score=14.57 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 47761488678899999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~ 98 (367)
-+++.+.-|+|||++.-+++
T Consensus 31 ~~~llGpsGsGKsTll~~ia 50 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99999999854999999997
No 487
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 1ars_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* 1cq7_A* ...
Probab=36.10 E-value=17 Score=14.54 Aligned_cols=70 Identities=11% Similarity=-0.117 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
Q ss_conf 84289999999888875124555-554112477614886788999999999999708997799971537999999
Q gi|254781187|r 50 QPHRWQLEFMEAVDVHCHSNVNN-SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 (367)
Q Consensus 50 ~p~~wq~~~l~~~~~~~~~~~~~-~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~ 123 (367)
+|...-.++.++|+++..+.... ..+... +.+. +.|.+...+....-.....|+..|++..|++..-..+
T Consensus 66 ~p~~G~~~lr~aia~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~l~~~~~~~~~~gd~Vlv~~P~y~~y~~~ 136 (396)
T 2q7w_A 66 LGIDGIPEFGRCTQELLFGKGSALINDKRA-RTAQ---TPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSV 136 (396)
T ss_dssp CCTTCCHHHHHHHHHHHHCTTCHHHHTTCE-EEEE---ESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCEE-EEEC---CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHH
T ss_conf 996678999999999997458987788649-9961---7578999999999997369998899828898648999
No 488
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=36.06 E-value=17 Score=14.54 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=26.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC-CCH
Q ss_conf 77614886788999999999999708997799971-537
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA-NSE 117 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A-~t~ 117 (367)
+++-+.=|+|||+.+..+.-++.. .+.++++++ |..
T Consensus 3 I~ieG~dGsGKsT~~~~L~~~L~~--~g~~v~~~~~P~~ 39 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK--RGKKVILKREPGG 39 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH--CCC-EEEEESSCS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCC
T ss_conf 999899888899999999999997--7998899769999
No 489
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=35.95 E-value=17 Score=14.53 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 47761488678899999999999970899779997
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~ 113 (367)
.+.|.+.=|+|||++...++-+. ....++.++
T Consensus 16 vi~v~G~~GaGKTTLl~~Ll~~~---~~~~~~~iV 47 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYL---EDNYKVAYV 47 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TTTSCEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHH---HHCCEEEEE
T ss_conf 89999189980999999999987---308748999
No 490
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, endosome, nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=35.87 E-value=17 Score=14.52 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=35.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCC--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 4366684289999999888875124555--554112477614886788999999999999708997799971
Q gi|254781187|r 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNN--SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 (367)
Q Consensus 45 ~~~~~~p~~wq~~~l~~~~~~~~~~~~~--~~~~~~~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A 114 (367)
+....|.+....++-+.|.-.+++...- ......-+.+.++.|+|||.++-+++--. +..++.+.
T Consensus 50 ~~dI~G~~~~k~~l~e~v~~pl~~~~l~~~~~~p~~giLL~GPpGtGKT~la~aiA~e~-----~~~~~~v~ 116 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVS 116 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH-----TCEEEEEE
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHC-----CCCCEECC
T ss_conf 89871899999999999999874989773699999626887999998899999999860-----89961300
No 491
>3lx5_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTP-binding, GTPase, transmembran nucleotide-binding; HET: AGO; 1.90A {Streptococcus thermophilus} PDB: 3lx8_A*
Probab=35.77 E-value=17 Score=14.51 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 11247761488678899999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~ 98 (367)
.+.++++.+--.+|||+++-+++
T Consensus 2 ~~~~ValvG~pNvGKStL~N~L~ 24 (272)
T 3lx5_A 2 SMTEIALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp --CEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 76889999999999999999996
No 492
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=35.55 E-value=17 Score=14.49 Aligned_cols=23 Identities=17% Similarity=-0.022 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 47761488678899999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWL 101 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~ 101 (367)
-+.|.++.|+|||.++-.++--+
T Consensus 3 l~~I~GpTasGKS~lAi~LA~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99997987527899999999986
No 493
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=35.38 E-value=18 Score=14.47 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=25.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-CCCH
Q ss_conf 7761488678899999999999970899779997-1537
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI-ANSE 117 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~-A~t~ 117 (367)
+++.+.=|+|||+.+..+.-++-... ..+..+ -|+.
T Consensus 13 I~ieG~dGsGKtT~~~~L~e~L~~~g--~~v~~~~~p~~ 49 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLKNNN--VEVKHLYFPNR 49 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCC
T ss_conf 99989988899999999999998779--96689984899
No 494
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=35.34 E-value=18 Score=14.47 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 77614886788999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~l 99 (367)
+.|.++-|+|||++...++-
T Consensus 19 ivi~GPSG~GK~tL~~~L~~ 38 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999999999999986
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 2zi3_A* ...
Probab=35.26 E-value=18 Score=14.46 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=20.3
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 1124776148867889999999999
Q gi|254781187|r 76 TIFKCAISAGRGIGKTTLNAWMMLW 100 (367)
Q Consensus 76 ~~~~~~v~sgrg~GKS~~~a~~~lw 100 (367)
.+..++|-++=|+|||+++-.+.-+
T Consensus 23 ~~k~I~IeG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9998999899888599999999999
No 496
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=34.98 E-value=18 Score=14.43 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 77614886788999999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~l 99 (367)
+.+.++-|+|||+++-.++-
T Consensus 23 ivi~GpsGsGK~Tl~~~L~~ 42 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989898899999999996
No 497
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=34.88 E-value=18 Score=14.42 Aligned_cols=53 Identities=15% Similarity=0.015 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCC---CCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 36668428999999988887512455---5554112477614886788999999999
Q gi|254781187|r 46 EHFSQPHRWQLEFMEAVDVHCHSNVN---NSNPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 46 ~~~~~p~~wq~~~l~~~~~~~~~~~~---~~~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
....|.+.--.++.+.|.-.+.+... ...|. .-+.+.++.|+|||.++.+++-
T Consensus 134 ~di~Gl~~~k~~l~e~v~~pl~~~~~~~~~~~p~-rgiLL~GPPGtGKT~lakaiA~ 189 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCC-SEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCC-CCEEEECCCCCCHHHHHHHHHH
T ss_conf 9965999999999999999974999774899999-7147779899978999999998
No 498
>1vkr_A Mannitol-specific PTS system enzyme iiabc components; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli O157} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=34.70 E-value=18 Score=14.41 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=21.6
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 554112477614886788999999999
Q gi|254781187|r 73 SNPTIFKCAISAGRGIGKTTLNAWMML 99 (367)
Q Consensus 73 ~~~~~~~~~v~sgrg~GKS~~~a~~~l 99 (367)
+..++.|+.+.+|.|.|=|.+.+..+-
T Consensus 9 ~~~~vkkIlvVC~~G~GSS~ml~~~i~ 35 (125)
T 1vkr_A 9 DLSHVRKIIVACDAGMGSSAMGAGVLR 35 (125)
T ss_dssp --CCCCEEEECCSSSSHHHHHHHHHHH
T ss_pred HHHHHCEEEEECCCCCCHHHHHHHHHH
T ss_conf 476527899999999657999999999
No 499
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=34.53 E-value=18 Score=14.39 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=26.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 477614886788999999999999708997799971537999999999
Q gi|254781187|r 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 (367)
Q Consensus 79 ~~~v~sgrg~GKS~~~a~~~lw~~~~~~~~~v~~~A~t~~Q~~~~lw~ 126 (367)
.+||-++=|+|||+++-.++--+ +...+- |+.--|.+.|.
T Consensus 5 ~IaIDGpagSGKsT~ak~LA~~l-----~~~~ld---TG~lYRa~a~~ 44 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL-----SMIYVD---TGAMYRALTYK 44 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT-----TCEEEE---HHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCEEEC---HHHHHHHHHHH
T ss_conf 99977898678899999999992-----992753---68999999999
No 500
>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13
Probab=34.47 E-value=18 Score=14.38 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 7761488678899999999
Q gi|254781187|r 80 CAISAGRGIGKTTLNAWMM 98 (367)
Q Consensus 80 ~~v~sgrg~GKS~~~a~~~ 98 (367)
+++.+.-|+|||++.-.+.
T Consensus 34 ~~ivG~SGsGKSTLlr~i~ 52 (343)
T 3dhw_C 34 YGVIGASGAGKSTLIRCVN 52 (343)
T ss_dssp EEEEESTTSSHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHH
T ss_conf 9999999834999999997
Done!