BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781187|ref|YP_003065600.1| putative phage terminase,
large subunit [Candidatus Liberibacter asiaticus str. psy62]
(367 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040864|gb|ACT57660.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME
Sbjct: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL
Sbjct: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER
Sbjct: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI
Sbjct: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN
Sbjct: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG
Sbjct: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
Query: 361 CPVGSSI 367
CPVGSSI
Sbjct: 361 CPVGSSI 367
>gi|315121940|ref|YP_004062429.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495342|gb|ADR51941.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 509
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/359 (73%), Positives = 303/359 (84%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
M R + T + EQEL E++ + LSF NFV+R FPW L +FS+P RWQL+FME
Sbjct: 1 MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
AVD C NV+N +P IFK A+SAGRGIGKTTLNAWMMLWLISTRPGMSI+C+ANSETQL
Sbjct: 61 AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
K+TLWAEVSKWLSMLP++HWFEMQSLSLHP+ WYAE LE++ GIDSKHYTITCRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
PDTFVG HNT+GMA+FNDEASGTPD+IN SILGFFTE N NRFW+MTSN RRL GWFYDI
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLKGWFYDI 240
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
FN+PLEDW+R+QIDTRTVEGID FHEGIISRYGLDSDV R+E+LGQFPQQ++N+FIP
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPSFHEGIISRYGLDSDVTRVEVLGQFPQQDINSFIPFY 300
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
IEEA++RE I D YAPLIMGCDIAGEGGD TVVV RRG IEHIFDWS + ++++
Sbjct: 301 RIEEALNREPIKDPYAPLIMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNASSRK 359
>gi|315122902|ref|YP_004063391.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496304|gb|ADR52903.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 509
Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 262/359 (72%), Positives = 303/359 (84%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
M R + T + EQEL E++ + LSF NFV+R FPW L +FS+P RWQL+FME
Sbjct: 1 MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
AVD C NV+N +P IFK A+SAGRGIGKTTLNAWMMLWLISTRPGMSI+C+ANSETQL
Sbjct: 61 AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
K+TLWAEVSKWLSMLP++HWFEMQSLSLHP+ WYAE LE++ GIDSKHYTITCRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
PDTFVG HNT+GMA+FNDEASGTPD+IN SILGFFTE N NRFW+MTSN RRLNGWFYDI
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLNGWFYDI 240
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
FN+PLEDW+R+QIDTRTVEGID FHE II+RYGLDSDV R+E+LGQFPQQ++N+FIP
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPNFHENIIARYGLDSDVTRVEVLGQFPQQDINSFIPFY 300
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
IEEA++RE I D YAPL+MGCDIAGEGGD TVVV RRG IEHIFDWS + ++++
Sbjct: 301 RIEEALNREPIKDPYAPLVMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNVSSRK 359
>gi|317120722|gb|ADV02544.1| putative phage terminase large subunit [Liberibacter phage SC2]
gi|317120783|gb|ADV02604.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 516
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 257/359 (71%), Positives = 302/359 (84%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
M R + T+ + EQ+L +++ E LSF NFV+ FFPWG KG PLE FS P WQLEFME
Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L S+GIDSKHY+ CRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
PDTFVG HNT+GMA+ NDEASGTPD+IN ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
FN PL+DWKR+QIDTRTVEGID FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPQQ 300
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
YI EA+ R AI D YAPLIMGCDIAGEG DKTVVV RRGNIIE IFDWS +LI+ TN++
Sbjct: 301 YIVEALERVAIPDPYAPLIMGCDIAGEGEDKTVVVLRRGNIIERIFDWSGELIEVTNRK 359
>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040892|gb|ACT57688.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120680|gb|ADV02503.1| putative phage terminase large subunit [Liberibacter phage SC1]
gi|317120824|gb|ADV02645.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 511
Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust.
Identities = 252/359 (70%), Positives = 299/359 (83%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
M R + T+ + EQ+L +++ E LSF NFV+ FFPWG KG PLE FS P WQLEFME
Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L S+GIDSKHY+ CRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
PDTFVG HNT+GMA+ NDEASGTPD+IN ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
FN PL+DWKR+QIDTRTVEGID FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP N
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
IEEA++RE D YAPLIMGCDIA EGGD TVVV RRG +IEH+FDWS ++ TN +
Sbjct: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
>gi|302120432|gb|ADK92426.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 255
Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/255 (76%), Positives = 224/255 (87%)
Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
IGKTTLNAW++LWL+S RPGMSIIC+ANSETQLK TLWAEVSKWLS+LP++HWFEMQSLS
Sbjct: 1 IGKTTLNAWLVLWLMSIRPGMSIICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 60
Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
LHP+ WY+++L S+GIDSKHY+ CRTYSEERPDTFVG HNT+GMA+ NDEASGTPD+I
Sbjct: 61 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 120
Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
N ILGF TE N NRFWIMTSN RRL+G FY+IFN PL+DWKR+QIDTRTVEGID FHE
Sbjct: 121 NLGILGFLTEQNANRFWIMTSNPRRLSGKFYEIFNRPLDDWKRFQIDTRTVEGIDPSFHE 180
Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
GII+RYGLDSDV R+E+ GQFPQQ++++FIP N IEEA++RE D YAPLIMGCDIA E
Sbjct: 181 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 240
Query: 328 GGDKTVVVFRRGNII 342
GGD TVVV RRG +I
Sbjct: 241 GGDNTVVVLRRGPVI 255
>gi|167032754|ref|YP_001667985.1| putative phage terminase large subunit [Pseudomonas putida GB-1]
gi|166859242|gb|ABY97649.1| putative phage terminase, large subunit [Pseudomonas putida GB-1]
Length = 499
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 162/333 (48%), Gaps = 22/333 (6%)
Query: 12 EQELHEMLMHAECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
EQEL A + SF + +V+ FPWG G L + + P +WQ E +E++
Sbjct: 11 EQEL------ANDIASFSDDPLGYVLYAFPWGEAGGELANKTGPRKWQREVLESIGEQLR 64
Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
+ + I + A+++G GIGK+ L +W++ W + T + AN+E+QL+ W E
Sbjct: 65 AGAKDRGEVI-REAVASGHGIGKSALVSWVIKWALDTEVDTRGVVTANTESQLRTKTWPE 123
Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
V+KW + HWF++ +L + E K++ I +S+ + F G
Sbjct: 124 VAKWNRLSITAHWFKLTGTALISTDPDHE----------KNWRIDAVPWSDTNTEAFAGL 173
Query: 188 HNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
HN + + DEAS D++ + G T+ + W N R +G F + F
Sbjct: 174 HNEGKRILLIFDEASAIADLVWEVAEGALTDADTEIIWAAFGNPTRNSGRFRECFTKFKH 233
Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
W+ Q+D+RTV+G + I+ YG DSD RI + G FP+ IP +++ EAM
Sbjct: 234 RWRHRQVDSRTVDGTNKTQIAKWIADYGEDSDFVRIRVRGMFPRASDLQLIPTDWVAEAM 293
Query: 307 SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
R+ + L L+ G DIA G D V+ FRRG
Sbjct: 294 RRDGVYGLDDALVCGIDIARGGMDNNVIRFRRG 326
>gi|323156136|gb|EFZ42295.1| terminase large subunit [Escherichia coli EPECa14]
Length = 491
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 147/313 (46%), Gaps = 15/313 (4%)
Query: 30 NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89
+ + FPWG +G L H + P +WQ + + H + P + A+++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPATRYQPLML--ALASGHGIG 82
Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
K+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIIN 208
+ +G D K + +SE + F G HN + V DEAS D++
Sbjct: 143 SN---------DLGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
+ G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAG 326
+ YG DSD +I + G FP FIP +EAM R A YAP+I+G D A
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAYAPVIIGVDPAY 312
Query: 327 EGGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 313 SGVDDAVIYLRQG 325
>gi|212710820|ref|ZP_03318948.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
30120]
gi|212686517|gb|EEB46045.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
30120]
Length = 493
Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 154/345 (44%), Gaps = 30/345 (8%)
Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
+I T EQ ++++ M LS+ + FPWG G LE+ S P +WQ E + +
Sbjct: 1 MIETMSPEEQLINDIGMFTHDPLSY---ALYAFPWGEAGTELENASGPRQWQAEALNEIG 57
Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
H + P + A ++G GIGK+ + ++ W + T ++ AN+E QL+
Sbjct: 58 EHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTK 115
Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSL------HPSGWYAELLEQSMGIDSKHYTITCRTYS 177
W E++KW + + WF ++ H + W A+ + +S
Sbjct: 116 TWPEIAKWQRLSITKDWFTCTKTAIYSNDPNHANAWRADAV----------------PWS 159
Query: 178 EERPDTFVGPHNTHGMAVFN-DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
E + F G HN + DEAS D++ + G T+ N WI N R G
Sbjct: 160 ENNTEAFAGLHNQGKRIILVFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGR 219
Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
F + F WK QID+RTVEG + E I YG+D D ++ + G FP F
Sbjct: 220 FRECFRKFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQF 279
Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
IP + AM R + +AP+I+G D A G D V+ R+G
Sbjct: 280 IPTGLTDAAMKRTVTQAEVSHAPIILGVDPAYSGDDDAVIYLRQG 324
>gi|303328395|ref|ZP_07358832.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
gi|302861389|gb|EFL84326.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
Length = 500
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 147/313 (46%), Gaps = 16/313 (5%)
Query: 30 NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89
FV+ FPWG G ++ P WQ E + + + S ++ + A+S+G G+G
Sbjct: 31 GFVLFAFPWG-GGALADYPDGPDVWQREILRGMGEQLSTGA--SAASVIREAVSSGHGVG 87
Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
K+ L AW++LW +ST + AN+E QLK WAE++KW + +WF+ + +
Sbjct: 88 KSALVAWIILWAMSTFSDTRGVVTANTENQLKGKTWAELAKWHRLCLCGYWFDCTATA-- 145
Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTPDIIN 208
L+ G + K + + +SE + F G HN + + DEAS PD I
Sbjct: 146 -------LISTQAGHE-KTWRVDMVAWSERNTEAFAGLHNKGRRVLLIFDEASAIPDAIW 197
Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
+ G T+ + W N R G F + F W ++D+RT D
Sbjct: 198 EVSEGALTDADTEIIWCCFGNPTRNTGRFRECFGRYAHRWNTRRVDSRTAAMTDKNQLAQ 257
Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMGCDIAG 326
+ YG DSD R+ + G+FP+ FI + + EA R D Y AP I+G D+A
Sbjct: 258 WVEDYGEDSDFVRVRVRGEFPRAGDRQFISSDIVHEARGRSLKPDQYSFAPRILGVDVAR 317
Query: 327 EGGDKTVVVFRRG 339
G D++V+ R+G
Sbjct: 318 SGSDQSVITRRQG 330
>gi|268589373|ref|ZP_06123594.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
gi|291315400|gb|EFE55853.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
Length = 493
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 155/345 (44%), Gaps = 30/345 (8%)
Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
+I T EQ ++++ M LS+ + FPWG G LE+ + P +WQ E + +
Sbjct: 1 MIDTMSPEEQLINDIGMFTHDPLSYALYA---FPWGEAGTELENANGPRQWQAEALNEIG 57
Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
H + P + A ++G GIGK+ + ++ W + T ++ AN+E QL+
Sbjct: 58 EHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTK 115
Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSL------HPSGWYAELLEQSMGIDSKHYTITCRTYS 177
W E++KW + + WF ++ H + W A+ + +S
Sbjct: 116 TWPEIAKWQRLSITKDWFTYTKTAIYSNDPNHANAWRADAV----------------PWS 159
Query: 178 EERPDTFVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
E + F G HN + + DEAS D++ + G T+ N WI N R G
Sbjct: 160 ENNTEAFAGLHNQGKRIILIFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGR 219
Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
F + F WK QID+RTVEG + E I YG+D D ++ + G FP F
Sbjct: 220 FRECFRKFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQF 279
Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
IP + AM R + +AP+I+G D A G D V+ R+G
Sbjct: 280 IPTGLTDAAMKRTVTQAEVSHAPIIIGVDPAYSGDDDAVIYLRQG 324
>gi|330007152|ref|ZP_08305894.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
gi|328535499|gb|EGF61959.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
Length = 495
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 157/342 (45%), Gaps = 23/342 (6%)
Query: 7 TDQKL--EQELHEMLMHAECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
TD L E++L E L+ + + SF + + + FPWG G L H S P +WQ +
Sbjct: 2 TDAALSPEEQLKEQLI--DDIASFTHDPLGYALYAFPWGEDGTELAHASGPRQWQADAFR 59
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
+ H + P + A +G GIGK+ + ++ W +ST ++ AN++ QL
Sbjct: 60 EIGEHLQNPATRHQPLMISRA--SGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQL 117
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
+ W E+ KW ++ + WF + +++ + G D K + +SE
Sbjct: 118 RTKTWPEIIKWSNLAITKEWFTCTATAMYSN---------DPGHD-KRWRADAIPWSEHN 167
Query: 181 PDTFVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
+ F G HN + V DEAS D++ + G T+ + W+ N R G F +
Sbjct: 168 TEAFAGLHNERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRE 227
Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
F WK QID+RTVEG + + + YG DSD ++ + G FP FIP
Sbjct: 228 CFRKYKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPT 287
Query: 300 NYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
+EAM R A +AP I+G D A G D V+ R+G
Sbjct: 288 GLTDEAMKRVVTAAQVAHAPRIIGVDPAYSGVDDAVIYLRQG 329
>gi|262043569|ref|ZP_06016682.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039103|gb|EEW40261.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 491
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 144/312 (46%), Gaps = 15/312 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQNPATRHQPLML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWAMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKEWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIVVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD ++ + G FP FIP +EAM R A+ +AP I+G D A
Sbjct: 254 VDDYGEDSDFVKVRVRGIFPDASELQFIPTGLTDEAMKRVVTAVQVAHAPRIIGVDPAYS 313
Query: 328 GGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 314 GVDDAVIYLRQG 325
>gi|332344357|gb|AEE57691.1| terminase, large subunit [Escherichia coli UMNK88]
Length = 491
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG +G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQNPATRHQPLML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD +I + G FP FIP +EAM R A +AP+I+G D A
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313
Query: 328 GGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 314 GVDDAVIYLRQG 325
>gi|324008564|gb|EGB77783.1| hypothetical protein HMPREF9532_01752 [Escherichia coli MS 57-2]
Length = 491
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 146/312 (46%), Gaps = 15/312 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG +G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ +G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DLGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD +I + G FP FIP +EAM R A +AP+I+G D A
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313
Query: 328 GGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 314 GVDDAVIYLRQG 325
>gi|327252187|gb|EGE63859.1| terminase large subunit [Escherichia coli STEC_7v]
Length = 491
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG +G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPATRYQPLML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD +I + G FP FIP +EAM R A +AP+I+G D A
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313
Query: 328 GGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 314 GVDDAVIYLRQG 325
>gi|300898423|ref|ZP_07116764.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|300357890|gb|EFJ73760.1| conserved hypothetical protein [Escherichia coli MS 198-1]
Length = 491
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG +G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD +I + G FP FIP +EAM R A +AP+I+G D A
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313
Query: 328 GGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 314 GVDDAVIYLRQG 325
>gi|218700994|ref|YP_002408623.1| putative phage terminase, large subunit [Escherichia coli IAI39]
gi|218370980|emb|CAR18807.1| putative phage terminase, large subunit [Escherichia coli IAI39]
Length = 491
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG +G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD +I + G FP FIP +EAM R A +AP+I+G D A
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313
Query: 328 GGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 314 GVDDAVIYLRQG 325
>gi|331648179|ref|ZP_08349269.1| conserved hypothetical protein [Escherichia coli M605]
gi|331043039|gb|EGI15179.1| conserved hypothetical protein [Escherichia coli M605]
Length = 491
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG +G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD +I + G FP FIP +EAM R A +AP+I+G D A
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313
Query: 328 GGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 314 GVDDAVIYLRQG 325
>gi|298381721|ref|ZP_06991320.1| terminase large subunit protein [Escherichia coli FVEC1302]
gi|301019339|ref|ZP_07183525.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|298279163|gb|EFI20677.1| terminase large subunit protein [Escherichia coli FVEC1302]
gi|299882256|gb|EFI90467.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|323948690|gb|EGB44595.1| hypothetical protein ERKG_04913 [Escherichia coli H252]
Length = 491
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG +G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD +I + G FP FIP +EAM R A +AP+I+G D A
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313
Query: 328 GGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 314 GVDDAVIYLRQG 325
>gi|294491573|gb|ADE90329.1| putative phage terminase, large subunit [Escherichia coli IHE3034]
Length = 491
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG +G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD +I + G FP FIP +EAM R A +AP+I+G D A
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313
Query: 328 GGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 314 GVDDAVIYLRQG 325
>gi|301046412|ref|ZP_07193572.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|300301638|gb|EFJ58023.1| conserved hypothetical protein [Escherichia coli MS 185-1]
Length = 491
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 144/312 (46%), Gaps = 15/312 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEDGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD +I + G FP FIP +EAM R A +AP+I+G D A
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAYS 313
Query: 328 GGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 314 GVDDAVIYLRQG 325
>gi|290968649|ref|ZP_06560187.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
gi|290781302|gb|EFD93892.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
Length = 487
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 160/325 (49%), Gaps = 29/325 (8%)
Query: 31 FVMRFFPWG---IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
FV F W +KG+ P WQ++ ++ V S T + A ++G G
Sbjct: 22 FVYFAFDWDSEELKGQ------NPQTWQIKTLKEVGEGL------SLSTALQHATASGHG 69
Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
IGK+ L AW++LW ISTRP + AN+ TQL+ WAE+SKW + + +F + S +
Sbjct: 70 IGKSALVAWLILWAISTRPDTRGVVTANTATQLETKTWAELSKWYHLFRGKKFFTLTSTA 129
Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTPDI 206
+ E E++ ID+ +++ +R ++F G HN + + + DEAS +
Sbjct: 130 IFCR---QEGHERTWRIDAIPWSV-------DRTESFAGLHNQGNRLLLIFDEASAIDNK 179
Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
I + G T+ + W++ N R G F+D F+ + W +ID+RTV+ +
Sbjct: 180 IWEVAEGALTDKDTEILWLVFGNPTRSTGRFFDCFHKYKKSWITQKIDSRTVDISNKTQL 239
Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL---YAPLIMGCD 323
+ I YG+DSD ++ +LG+FP FI + A R + +AP I+G D
Sbjct: 240 QKWIQTYGIDSDFVKVRVLGEFPDTSDTQFISTAIVRTAWERRPLRTAEYDFAPCIIGMD 299
Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDW 348
A GGD TV+ R+G E + ++
Sbjct: 300 PAWTGGDSTVIFLRQGFFSEKLAEY 324
>gi|30387381|ref|NP_848210.1| terminase large subunit [Enterobacteria phage epsilon15]
gi|30266036|gb|AAO06065.1| terminase large subunit [Salmonella phage epsilon15]
Length = 491
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 155/338 (45%), Gaps = 21/338 (6%)
Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
IST+++L +++ A + + FPWG G L H + P +WQ + +
Sbjct: 6 ISTEEQLVEDI------ASFTYDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIRD 59
Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+
Sbjct: 60 HLQNPATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117
Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
W E+ KW ++ + WF + +++ + G D K + +SE + F
Sbjct: 118 WPEIIKWSNLAITKEWFTCTATAMYSN---------DPGHD-KRWRADAIPWSEHNTEAF 167
Query: 185 VGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
G HN + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227
Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
WK QID+RTVEG + + + YG +SD ++ + G FP FIP +
Sbjct: 228 YKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEESDFVKVRVRGIFPDASELQFIPTGLTD 287
Query: 304 EAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
EAM R A +AP+I+G D A G D V+ R+G
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQG 325
>gi|320175050|gb|EFW50163.1| terminase B protein, putative [Shigella dysenteriae CDC 74-1112]
Length = 480
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 145/313 (46%), Gaps = 15/313 (4%)
Query: 30 NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89
+ + FPWG +G L H + P +WQ + + H + P + A ++G GIG
Sbjct: 14 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 71
Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
K+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 72 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 131
Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIIN 208
+ G D K + +SE + F G HN + V DEAS D++
Sbjct: 132 SN---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 181
Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
+ G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 182 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQQLQK 241
Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAG 326
+ YG DSD +I + G FP FIP +EAM R A +AP+I+G D A
Sbjct: 242 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 301
Query: 327 EGGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 302 SGVDDAVIYLRQG 314
>gi|117624715|ref|YP_853628.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
gi|115513839|gb|ABJ01914.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
Length = 491
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 145/312 (46%), Gaps = 15/312 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG +G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD +I + G FP FIP +EAM R A ++P+I+G D A
Sbjct: 254 VDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHSPVIIGVDPAYS 313
Query: 328 GGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 314 GVDDAVIYLRQG 325
>gi|89152423|ref|YP_512256.1| putative terminase large subunit [Escherichia phage phiV10]
gi|74055446|gb|AAZ95895.1| putative terminase large subunit [Escherichia phage phiV10]
Length = 491
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 144/313 (46%), Gaps = 15/313 (4%)
Query: 30 NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89
+ + FPWG +G L H + P +WQ + + H + P + A ++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 82
Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
K+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIIN 208
+ G D K + +SE + F G HN + V DEAS D++
Sbjct: 143 SN---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
+ G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAG 326
+ YG SD +I + G FP FIP +EAM R A +AP+I+G D A
Sbjct: 253 WVDDYGEGSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312
Query: 327 EGGDKTVVVFRRG 339
G D V+ R+G
Sbjct: 313 SGVDDAVIYLRQG 325
>gi|309702815|emb|CBJ02146.1| putative terminase, large subunit [Escherichia coli ETEC H10407]
Length = 493
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 148/321 (46%), Gaps = 15/321 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG +G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQNPATRHQPIML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKEWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKEQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD ++ + G FP N FIP + A+ R +A +++G D + +
Sbjct: 254 VDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPAVGRVITPAQVQHAAVVLGVDPSHQ 313
Query: 328 GGDKTVVVFRRGNIIEHIFDW 348
G D V+ R+G + + +W
Sbjct: 314 GKDPAVIYLRQGLHCKKLGEW 334
>gi|215487825|ref|YP_002330256.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|215265897|emb|CAS10306.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
Length = 493
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 147/321 (45%), Gaps = 15/321 (4%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG G L H + P +WQ + + H + P + A ++G GIGK
Sbjct: 26 YALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQNPATRHQPLML--ARASGHGIGK 83
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKEWFTCTATAMYS 143
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINK 209
+ G D K + +SE + F G HN + V DEAS D++ +
Sbjct: 144 N---------DPGHD-KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
G T+ + W+ N R G F + F WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQQLQKW 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGE 327
+ YG DSD ++ + G FP N FIP + A+ R +A +++G D + +
Sbjct: 254 VDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPAVGRVITPAQVQHAAVVLGVDPSHQ 313
Query: 328 GGDKTVVVFRRGNIIEHIFDW 348
G D V+ R+G + + +W
Sbjct: 314 GKDPAVIYLRQGLHCKKLGEW 334
>gi|282848875|ref|ZP_06258265.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
gi|282581380|gb|EFB86773.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
Length = 483
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 157/337 (46%), Gaps = 17/337 (5%)
Query: 14 ELHEMLMHAECVLSFK--NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVN 71
E H+ L+ A L+ FV +PWG G PLE+ P WQ++ ++ D+
Sbjct: 2 EKHDELIEALGALTHDPLAFVYFAYPWGEPGTPLENMEGPDEWQIQILK--DIGEQLKKG 59
Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
T + A+++G GIGK+ L +W++ + IST + AN+E QL+ W E+SKW
Sbjct: 60 KDLQTAIQEAVASGHGIGKSALISWLIHFAISTHENTRGVVTANTEGQLRTKTWPELSKW 119
Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT- 190
+M + F + ++ S E K + I +S+ P++F G HN
Sbjct: 120 HNMFIAKDLFTYTATAIFSSDKDYE----------KTWRIDAIPWSKNSPESFAGLHNQG 169
Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
+ + V DEAS D+I + G T+ N W N R +G F + F + W
Sbjct: 170 NRILVLFDEASAIDDVIWEVTEGALTDANTEIIWCAFGNPTRNSGRFRECFRKYRKFWNT 229
Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
YQID+RTV+ + E + YG DSD ++ + G FP FI ++A +
Sbjct: 230 YQIDSRTVKISNKTKIEEWLEAYGEDSDFFKVRVRGVFPSASDLQFISTEIADKAQKQVY 289
Query: 311 IDDLYA--PLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
+ P+I+G D A G D +V R+G ++ +
Sbjct: 290 KPGQFEHLPVIIGVDPAWTGSDSLEIVMRQGYYMKSL 326
>gi|227355862|ref|ZP_03840255.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
gi|227164181|gb|EEI49078.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
Length = 494
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 151/344 (43%), Gaps = 33/344 (9%)
Query: 9 QKLEQELHEMLMHAECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
+ L++ E L+ E + SF + + FPWG G LE ++ P +WQ E + +
Sbjct: 3 EALQKSPEEQLI--EDIASFTHDPLGYAYYAFPWGEAGGELEEYNGPRQWQAEALNEIGE 60
Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
H + P + A ++G GIGK+ + ++ W + T ++ AN+E QL+
Sbjct: 61 HLRNPKTRHQPLLL--ARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTKT 118
Query: 125 WAEVSKWLSMLPHRHWFEMQSLSL------HPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
W E++KW + +WF ++ H + W A+ + +SE
Sbjct: 119 WPEIAKWQRLSLTNNWFTCTKTAIYSNDPNHANAWRADAV----------------PWSE 162
Query: 179 ERPDTFVGPHNTHGMAVFN-DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
+ F G HN + DEAS D++ + G T+ WI N R G F
Sbjct: 163 NNTEAFAGLHNKGKRIILVFDEASNIADLVWEVAEGALTDEGTEIIWIAFGNPTRNTGRF 222
Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
+ F W QID+RTVEG + + YG DSD ++ + G FP FI
Sbjct: 223 RECFRKFKHRWNTKQIDSRTVEGSNKEQIKNWEEDYGEDSDFFKVRVRGVFPSASELQFI 282
Query: 298 PHNYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
P +EAM R + +AP+I+G D A G D V+ R+G
Sbjct: 283 PTGLTDEAMKRIVTQAEVAHAPVIIGVDPAYSGIDDAVIYLRQG 326
>gi|304398406|ref|ZP_07380280.1| terminase, large subunit [Pantoea sp. aB]
gi|304354272|gb|EFM18645.1| terminase, large subunit [Pantoea sp. aB]
Length = 490
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 139/318 (43%), Gaps = 27/318 (8%)
Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
+ + FPWG +G L + P +WQ + + + H + P + A +G GIGK
Sbjct: 25 YALYAFPWGEEGTDLAYSKGPRQWQEDAFKQIGAHLQNPDTRHQPLMIGRA--SGHGIGK 82
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL-- 148
+ + ++ W + T ++ AN+E QL+ W E++KW + + WF + ++
Sbjct: 83 SAFISMLVKWGMDTCEDCKVVVTANTENQLRTKTWPEIAKWQRLSITQDWFTCTATAIYS 142
Query: 149 ----HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF-NDEASGT 203
H W A+ + +SE + F G HN + DEAS
Sbjct: 143 NDPSHAKSWRADAI----------------PWSENNTEAFAGLHNERKRIILIFDEASNI 186
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
D++ + G T+ N W+ N R G F + F WK QID+R+VEG +
Sbjct: 187 ADLVWEVAEGALTDENTEIIWVAFGNPTRNTGRFRECFRKLRHRWKTAQIDSRSVEGTNK 246
Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMG 321
+ + YG DSD ++ + G FP FIP + A+ R +A ++G
Sbjct: 247 EQIQKWVDDYGEDSDFVKVRVRGLFPSASEAQFIPTGLTDAAVGRVITPGQVAHAATVIG 306
Query: 322 CDIAGEGGDKTVVVFRRG 339
D A +GGD V+ R+G
Sbjct: 307 VDPAHQGGDPAVIYLRQG 324
>gi|332981151|ref|YP_004462592.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
gi|332698829|gb|AEE95770.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
Length = 461
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 146/301 (48%), Gaps = 50/301 (16%)
Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
++P WQ E ++A+ NP + A+ +G G+GKT L AW +LW + TRP
Sbjct: 25 AEPDDWQAETLQAL---------ADNPRV---AVRSGHGVGKTALEAWALLWFLFTRPYP 72
Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSL----HPSGWYAELLEQSMG 163
I C A + QL + LWAE SKWL P + +FE Q + +P W+A
Sbjct: 73 KIPCTAPTREQLHDILWAEASKWLERAPALKPYFEWQKTRIVQKQYPGRWFA-------- 124
Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
T RT + +P+ G H H + + DEASG D I ++I G T +
Sbjct: 125 --------TARTSN--KPENMAGFHEEHLLFII-DEASGIADNIFETIEGALTTSDAK-- 171
Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG-----FHEGIISRYGLDSD 278
+M N + +G F+D F +D Y TR V +DS + E + +Y DSD
Sbjct: 172 LLMCGNPTKNSGVFHDAF---FKDRSLYW--TRKVSCLDSQRVTLEYAERLKRKYHEDSD 226
Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
V R+ +LG+FP+ E + FI + +E A R+ D L +G D+A G D+TV+ R
Sbjct: 227 VYRVRVLGEFPKAEPDTFISLDIVEAATMRDVEPD--GVLEIGVDVARFGDDETVLAARA 284
Query: 339 G 339
G
Sbjct: 285 G 285
>gi|153810665|ref|ZP_01963333.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
gi|149833061|gb|EDM88143.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
Length = 469
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 136/264 (51%), Gaps = 17/264 (6%)
Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
++ +G GIGK+ + AW ++W + T P I C A ++ QL + LWAE+SKW R+
Sbjct: 44 SVRSGHGIGKSAVEAWSVIWFMCTHPYPKIPCTAPTQHQLFDILWAEISKW-----KRNN 98
Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
+ S + W E L M ++ + RT S PD G H H + + DEA
Sbjct: 99 KTLDSELI----WTKEKL--YMKGHAEEWFAVARTAST--PDALQGFHAEHMLYII-DEA 149
Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
SG D I + +LG + P +M N +L+G+FYD N E + + ID R
Sbjct: 150 SGVEDKIFEPVLGALS--TPGAKLLMCGNPTQLSGFFYDSHNKNREQYSTFHIDGRNSTR 207
Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI- 319
+ F + II+ YG DSDV R+ + G FP E + +IP +E++++ E + +I
Sbjct: 208 VSQEFVQTIINMYGEDSDVFRVRVAGDFPLAEDDIYIPLPLVEKSIATEYFPRRHPQIIH 267
Query: 320 MGCDIAGEGGDKTVVVFRRGNIIE 343
+GCD+A G DKTV+ +R ++
Sbjct: 268 IGCDVARFGTDKTVIGYRTDEKVQ 291
>gi|54302246|ref|YP_132239.1| terminase large subunit [Photobacterium profundum SS9]
gi|46915667|emb|CAG22439.1| hypothetical protein PBPRB0566 [Photobacterium profundum SS9]
Length = 513
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 151/324 (46%), Gaps = 25/324 (7%)
Query: 31 FVMRFFPWGIK------------GKPLEHFSQPHRWQLEFMEAV-DVHCHSNVNNSNPT- 76
FVM +PW + P W E + + +V ++ N +P
Sbjct: 27 FVMYAYPWDTDPDLQIVKLPEPWASKYDSVYGPDAWFCEMCDQLQEVIRKNDFNGVDPVD 86
Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
F +IS+G GIGK+ ++W++ +++STRP + +N+ QL+ W E+ KW L
Sbjct: 87 AFLYSISSGHGIGKSCASSWLIHFVMSTRPNSKGVVTSNTSEQLRTKTWGELGKWTKKLI 146
Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
++HWF + + + ++ + E + +D++ TCR EE ++F G H +
Sbjct: 147 NKHWFVYNNGKGNMNFYHKDYAE-TWRVDAQ----TCR---EENSESFAGLHCASSTPWY 198
Query: 197 -NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
DEAS PD I + G T+ P FW + N R +G F + + + W R QID+
Sbjct: 199 LFDEASAVPDKIWEVAEGGLTDGEP--FWFVFGNPTRNSGRFRECWRRFRQRWNRKQIDS 256
Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
TV+ + S YG DSD R+ + G FP N I +E AMSR A
Sbjct: 257 STVQVTNKKKISEWESDYGEDSDFYRVRVKGVFPSASSNQKISGALLEAAMSRTAHVIPG 316
Query: 316 APLIMGCDIAGEGGDKTVVVFRRG 339
+P +M D+A GGD V FR G
Sbjct: 317 SPRVMSLDVARGGGDNCVFRFRHG 340
>gi|332976102|gb|EGK12970.1| hypothetical protein HMPREF9374_1123 [Desmospora sp. 8437]
Length = 462
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 144/300 (48%), Gaps = 42/300 (14%)
Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
++P WQ D+ + +N + A+ AG G+GKT AW +LW + TRP
Sbjct: 31 AEPDEWQ-------DIALQALADNQ-----RVAVRAGHGVGKTATEAWAVLWFLLTRPFP 78
Query: 109 SIICIANSETQLKNTLWAEVSKWL----SMLPHRHWFEMQ-SLSLHPSGWYAELLEQSMG 163
I C A ++ QL + LW E++KWL + P+ W + + + + W+A
Sbjct: 79 KIPCTAPTKPQLMDVLWPEIAKWLMNAPELAPYVEWQKTRVVMKQYEERWFA-------- 130
Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
T RT + +P+ G H H + V DEASG + I ++I G T
Sbjct: 131 --------TARTSN--KPENMAGFHEEHLLFVI-DEASGVDNAIFETIDGALTTAGSK-- 177
Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
+M N R NG FYD F+ + + Y+I + + + +YG DSD+ R+
Sbjct: 178 LVMFGNPTRTNGVFYDAFHQDRDLYWTYKISCLDSKMASKDYARNMARKYGEDSDIYRVR 237
Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
+ G+FPQ + ++FIP +E+A R E ID+ L +G D+A G D+TV+ R G +
Sbjct: 238 VQGEFPQGDPDSFIPLELVEDARVRDLEWIDE--DELHIGVDVARFGSDETVLAARIGPV 295
>gi|257883493|ref|ZP_05663146.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|294614775|ref|ZP_06694675.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
gi|294622490|ref|ZP_06701512.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|257819151|gb|EEV46479.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|291592387|gb|EFF23996.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
gi|291598037|gb|EFF29147.1| conserved hypothetical protein [Enterococcus faecium U0317]
Length = 471
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 151/307 (49%), Gaps = 21/307 (6%)
Query: 35 FFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
F P+ G ++++ +P + + + NV N K ++ +G+G+GKT L
Sbjct: 5 FIPFADIGSAIDYYYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTAL 64
Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
A +LW ++ RP +I A + QL + LWAEV+KWL+ ++ + ++ G
Sbjct: 65 EAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG- 123
Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
DS+ + T RT + +P+ G H H M + DEASG D I ++ILG
Sbjct: 124 -----------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAILG 169
Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
+ + N+ +M N + G FYD N + ++ +++ + + + E I+ +Y
Sbjct: 170 TLSGFD-NKL-LMCGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKY 227
Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI---MGCDIAGEGGD 330
G +SDVAR+ I G+FP+ +++FI +E A ++ D L +G D+A G D
Sbjct: 228 GKESDVARVRIFGEFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDD 287
Query: 331 KTVVVFR 337
T++ R
Sbjct: 288 STILFPR 294
>gi|261208032|ref|ZP_05922709.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289567088|ref|ZP_06447483.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|260077749|gb|EEW65463.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289161103|gb|EFD09008.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
Length = 471
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 151/307 (49%), Gaps = 21/307 (6%)
Query: 35 FFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
F P+ G ++++ +P + + + NV N K ++ +G+G+GKT L
Sbjct: 5 FIPFADIGAAIDYYYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTAL 64
Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
A +LW ++ RP +I A + QL + LWAEV+KWL+ ++ + ++ G
Sbjct: 65 EAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG- 123
Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
DS+ + T RT + +P+ G H H M + DEASG D I ++ILG
Sbjct: 124 -----------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAILG 169
Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
+ + N+ +M N + G FYD N + ++ +++ + + + E I+ +Y
Sbjct: 170 TLSGFD-NKL-LMCGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKY 227
Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI---MGCDIAGEGGD 330
G +SDVAR+ I G+FP+ +++FI +E A ++ D L +G D+A G D
Sbjct: 228 GKESDVARVRIFGEFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDD 287
Query: 331 KTVVVFR 337
T++ R
Sbjct: 288 STILFPR 294
>gi|160940775|ref|ZP_02088117.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
BAA-613]
gi|158436295|gb|EDP14062.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
BAA-613]
Length = 484
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 127/262 (48%), Gaps = 33/262 (12%)
Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH- 139
++ +G GIGK+ + AW ++W + TRP I C A +E QL + LWAE+SKW+ P
Sbjct: 44 SVRSGHGIGKSAVEAWSVIWYMCTRPFPKIPCTAPTEHQLMDVLWAEISKWMRNNPALRD 103
Query: 140 ---WF-EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
W E + HP W+A RT + P+ G H H + +
Sbjct: 104 DLIWTKEKLYMQGHPEEWFA----------------VPRTATN--PEALQGFHAEHVLYI 145
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
DEASG D + + +LG T + +M N RL G+FYD + E + +D
Sbjct: 146 I-DEASGVSDKVFEPVLGAMT--GEDAKLLMMGNPTRLAGFFYDSHHRNREQYSAIHVDG 202
Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
R + + F + II +G DSDV R+ + GQFP+ ++ I + EEA + + +Y
Sbjct: 203 RDSQHVSRTFVQKIIDMFGEDSDVFRVRVAGQFPKSTPDSLIAMEWCEEAANLQ----VY 258
Query: 316 AP---LIMGCDIAGEGGDKTVV 334
AP + +G D+A G D + +
Sbjct: 259 APGGQIDIGVDVARYGDDSSAL 280
>gi|319956916|ref|YP_004168179.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
16511]
gi|319419320|gb|ADV46430.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
16511]
Length = 462
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 153/331 (46%), Gaps = 42/331 (12%)
Query: 42 GKPLEHF------SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
K LE F ++P + Q++ + A+D K +I +G G GKTTL A
Sbjct: 13 AKSLEFFVRVILKAKPTKQQMKAIRAIDQGKK-----------KISIRSGHGTGKTTLLA 61
Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
W++LW R I A + QL + L E+ KW +P ++ E+
Sbjct: 62 WIVLWWGLGREDAKIPMTAPTGHQLYDLLMPEIRKWREKMPVQYQNEV------------ 109
Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
E+ + + + ++ + RT +++P+ G H T+ +A DEASG P +I + G
Sbjct: 110 EVKTEKIDFANGNFAVP-RTARKDQPEALQGFHATN-LAFIIDEASGIPQVIFEVAEGAM 167
Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
T + IM +N R G+FYD + W+ +Q + E + + E +YG
Sbjct: 168 T--GESTLVIMAANPTRTEGYFYDSHHKNRWQWECFQFNAEESENVSKEWIEEKKRQYGE 225
Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
DSDV R+ I G+FP+Q N +++A +RE +DD A + G D+A G DK+V+
Sbjct: 226 DSDVYRVRIKGEFPRQSSNAVFSLQEVDDATTREIVDDSGAE-VWGLDVADFGDDKSVLA 284
Query: 336 FRRGNIIEHIF--------DWSAKLIQETNQ 358
R+G I D + LI E NQ
Sbjct: 285 KRKGKHFHEITARSGLTLPDLAGWLIYEYNQ 315
>gi|228950291|ref|ZP_04112468.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228809453|gb|EEM55897.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 495
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 136/311 (43%), Gaps = 54/311 (17%)
Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
+P WQ E + + H H +V +G+G+GKT + +W+ +W + RP
Sbjct: 40 EPDPWQKEVLNDIANHSHVSVR------------SGQGVGKTAMESWICIWFLCCRPYPK 87
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG----WYAELLEQSMGID 165
IIC A ++ QL + LWAE++KWL+ + + ++ G W+A
Sbjct: 88 IICTAPTKQQLYDVLWAEIAKWLNSSQVKDLLKWTKTKIYMKGFEDRWFA---------- 137
Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
T +T + RP+ G H + M DEASG D I ++ILG + F
Sbjct: 138 ------TAKTAT--RPENMQGFHEDY-MLFIADEASGIADDIMEAILGTLSGSENKLF-- 186
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
M N + +G F+D N +K +++ + E + +YG SDV R+ +
Sbjct: 187 MCGNPTKTSGVFFDSHNKDRALYKSHKVSSADSPRTSKKNIEMLKKKYGEGSDVYRVRVE 246
Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLY-----------------APLIMGCDIAGEG 328
G+FP+ E + FI E A RE A + +GCD+A G
Sbjct: 247 GEFPRGEADAFISLETAEAARMREVYKVEVIENEEEESTVKEIIPDTAVVEIGCDVARFG 306
Query: 329 GDKTVVVFRRG 339
D+T++ RRG
Sbjct: 307 SDETIIATRRG 317
>gi|228968731|ref|ZP_04129698.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228790961|gb|EEM38595.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 459
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 138/282 (48%), Gaps = 26/282 (9%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
K ++ +G+G+GKT L + +++W + RP +IC A ++ QL LWAE++KWL +
Sbjct: 39 KVSVRSGQGVGKTGLESVVVIWFLCCRPNPKVICTAPTKEQLFTVLWAEIAKWLEGSAVK 98
Query: 139 HWFEMQSLSLHPSG----WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
+ + ++ G W+A T RT + +P+ G H + M
Sbjct: 99 NLLKWTKTRVYMIGSEERWFA----------------TARTAT--KPENMQGFHEDY-ML 139
Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
DEASG D I ++ILG + F + N R +G FYD N + +K +++
Sbjct: 140 FVCDEASGIADPIMEAILGTLSGAENKLF--LCGNPTRTSGVFYDSHNRDRDLYKIHKVS 197
Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
+ E + +YG SDV R+ +LG+FP+ E + FIP +E+A S + ++
Sbjct: 198 SLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPKAEADAFIPLEIVEQAASCK-VEPT 256
Query: 315 YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
L +G D+A G D+TV+ R GN + + + + ET
Sbjct: 257 GETLDLGVDVARFGDDETVIAPRIGNKVFKLLNHYKQDTMET 298
>gi|228911519|ref|ZP_04075310.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
200]
gi|228848128|gb|EEM92991.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
200]
Length = 459
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 138/282 (48%), Gaps = 26/282 (9%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
K ++ +G+G+GKT L + +++W + RP +IC A ++ QL LWAE++KWL +
Sbjct: 39 KVSVRSGQGVGKTGLESVVVIWFLCCRPNPKVICTAPTKEQLFTVLWAEIAKWLEGSAVK 98
Query: 139 HWFEMQSLSLHPSG----WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
+ + ++ G W+A T RT + +P+ G H + M
Sbjct: 99 NLLKWTKTRVYMIGSEERWFA----------------TARTAT--KPENMQGFHEDY-ML 139
Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
DEASG D I ++ILG + F + N R +G FYD N + +K +++
Sbjct: 140 FVCDEASGIADPIMEAILGTLSGAENKLF--LCGNPTRTSGVFYDSHNRDRDLYKIHKVS 197
Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
+ E + +YG SDV R+ +LG+FP+ E + FIP +E+A S + ++
Sbjct: 198 SLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPKAEADAFIPLEIVEQAASCK-VEPT 256
Query: 315 YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
L +G D+A G D+TV+ R GN + + + + ET
Sbjct: 257 GETLDLGVDVARFGDDETVIAPRIGNKVFKLLNHYKQDTMET 298
>gi|150390341|ref|YP_001320390.1| hypothetical protein Amet_2579 [Alkaliphilus metalliredigens QYMF]
gi|149950203|gb|ABR48731.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
Length = 469
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 136/280 (48%), Gaps = 21/280 (7%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
K ++ +G+G+GKT L + + W + TRP +I A + QL + LWAE+SKWLS
Sbjct: 44 KVSVRSGQGVGKTGLESIAITWYLCTRPFPKVIATAPTRQQLYDVLWAEISKWLSKSKVD 103
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
++ +G+ + + T RT RP+ G H + + V D
Sbjct: 104 KLLRWTKTKIYMNGF------------EERWWATARTAV--RPENMQGFHEDYMLFVV-D 148
Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
EASG D I ++ILG T N+ ++ N + +G FYD N + +K +++ +
Sbjct: 149 EASGVADPIMEAILGTLTGYE-NKL-LLCGNPTKTSGTFYDSHNRDRDTYKSHKVSSMDS 206
Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP- 317
E + +YG DSDV R+ +LG FP+ E ++ I E+A E + D+
Sbjct: 207 PRTSKENIEMLKKKYGADSDVFRVRVLGDFPKGEADSLISLEVTEQAA--ETVVDISNAY 264
Query: 318 -LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
L +G DIA G DKT++ R GN + + +S K ET
Sbjct: 265 TLNIGADIARFGDDKTIIAPRIGNRVLDLQQYSKKDTMET 304
>gi|323486060|ref|ZP_08091391.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
WAL-14163]
gi|323400627|gb|EGA92994.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
WAL-14163]
Length = 476
Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 132/265 (49%), Gaps = 17/265 (6%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
K AI +G+G+GKT + A +LW + P I+ A ++ QL + LW+EVSKW+S P
Sbjct: 52 KVAIKSGQGVGKTGMEAVALLWFLCCYPYPRIVATAPTKQQLHDVLWSEVSKWMSKSP-- 109
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
+ S L + Y ++ + K + RT + +P+ G H + M D
Sbjct: 110 ----LLSDILKWTKTYIYMVG-----NEKRWFAVARTAT--KPENMQGFHEDN-MLFIVD 157
Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
EASG D I ++ILG + N +M N R +G FYD FN+ ++ + + +
Sbjct: 158 EASGVADPIMEAILGTLS--GANNKLLMCGNPTRTSGTFYDAFNVDRSIYRCHTVSSADS 215
Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
+ + E +I +YG DS+V + + G+FP+QE + FI + +E + DD+
Sbjct: 216 KRTNKQNIESLIRKYGKDSNVVLVRVFGEFPKQEDDVFIALSIVEHCCMLDLPDDVPIKR 275
Query: 319 I-MGCDIAGEGGDKTVVVFRRGNII 342
I G D+A G D+TV+ G I
Sbjct: 276 ISFGVDVARYGSDETVIAKNVGGRI 300
>gi|282598712|ref|YP_003358792.1| putative phage terminase B protein [Enterococcus phage phiEf11]
gi|300860603|ref|ZP_07106690.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
gi|307292389|ref|ZP_07572245.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
TX0411]
gi|258598082|gb|ACV83339.1| putative phage terminase B protein [Enterococcus phage phiEf11]
gi|300849642|gb|EFK77392.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
gi|306496518|gb|EFM66079.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
TX0411]
gi|315146097|gb|EFT90113.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
Length = 484
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 133/264 (50%), Gaps = 20/264 (7%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
K ++ +G+G+GKT L A +LW ++ RP +I A + QL + LWAEV+KWL+ +
Sbjct: 50 KVSVRSGQGVGKTALEAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNNSLIK 109
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
+ ++ G DS+ + T RT + +P+ G H H M + D
Sbjct: 110 DLLKWTKTKIYMVG------------DSERWFATARTAT--KPENMQGFHEDH-MLIVVD 154
Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
EASG D I ++ILG + + N+ +M N + G FYD N + ++ +++ +
Sbjct: 155 EASGVADPIMEAILGTLSGFD-NKL-LMCGNPNNIEGVFYDSHNTDRDKYRTHKVSSYDS 212
Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
+ + + +I +YG +SDVAR+ I G+FP+ +++FI +E A D +
Sbjct: 213 KRTNKENIQMLIDKYGENSDVARVRIYGEFPKGALDSFISLEIVEFAKDINISDSELKHV 272
Query: 319 I---MGCDIAGEGGDKTVVVFRRG 339
+G D+A G D T+V R G
Sbjct: 273 REGHIGVDVARFGDDSTIVFPRIG 296
>gi|266623290|ref|ZP_06116225.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
gi|288864932|gb|EFC97230.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
Length = 484
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 130/259 (50%), Gaps = 27/259 (10%)
Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH- 139
++ +G G+GK+ + +W ++W + TRP I C A ++ QL + LWAE+SKWL P
Sbjct: 44 SVRSGHGVGKSAVESWSVIWFLCTRPFPKIPCTAPTQHQLYDILWAEISKWLRNNPELKN 103
Query: 140 ---WFEMQS-LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
W + + ++ +P W+A RT + P+ G H H + +
Sbjct: 104 DIIWTQQRVYMNGYPEEWFA----------------VPRTATN--PEALQGFHAEHVLYI 145
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
DEASG D + + +LG T + +M N RL+G+F+D + ++ ID
Sbjct: 146 I-DEASGVSDKVFEPVLGAMT--GEDAKLLMMGNPTRLSGFFFDSHHKSRSEYSAMHIDG 202
Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
R + ++ F + II+ +G+DSDV R+ + GQFP+ ++ I ++ E A + + +
Sbjct: 203 RDSQHVNQKFVQKIINMFGMDSDVFRVRVAGQFPKSTPDSLIMMDWCEAATQLKP-ETVR 261
Query: 316 APLIMGCDIAGEGGDKTVV 334
+ +G D+A G D + +
Sbjct: 262 NRVDIGVDVARYGDDSSAL 280
>gi|150016512|ref|YP_001308766.1| hypothetical protein Cbei_1636 [Clostridium beijerinckii NCIMB
8052]
gi|149902977|gb|ABR33810.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
8052]
Length = 470
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 145/288 (50%), Gaps = 36/288 (12%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
K ++ +G+G+GKT L + ++ W + TRP +I A + QL + LWAE+SKWL+
Sbjct: 44 KVSVRSGQGVGKTGLESIVVTWYLCTRPFPKVIATAPTRQQLYDVLWAEISKWLASSKIE 103
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
+ E ++ G+ S+ + T +T + RP+ G H + + V D
Sbjct: 104 NLLEWTKTKIYMKGY------------SERWWATAKTAT--RPENMQGFHEDYMLFVV-D 148
Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT--- 255
EASG D I ++ILG T N+ +M N R +G FYD N + +K +++ +
Sbjct: 149 EASGVADPIMEAILGTLTGYE-NKL-LMCGNPTRTSGTFYDSHNRDRDLYKTFKVSSLES 206
Query: 256 -RT----VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
RT +E + +HEG SDV R+ + G+FP+ E ++ I Y E A +
Sbjct: 207 PRTSKDNIEMLKRKYHEG--------SDVWRVRVEGEFPKGESDSLISLEYAETA-TITK 257
Query: 311 IDDLYA--PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
I++++ L +G DIA G D++V+ R GN + + ++ K ET
Sbjct: 258 INNIHNNFTLHIGADIARFGNDESVIAPRIGNKVFDLLTYTKKDTMET 305
>gi|209901239|ref|YP_002290878.1| putative terminase B [Clostridium phage phiCD27]
gi|199612120|gb|ACH91293.1| putative terminase B [Clostridium phage phiCD27]
Length = 469
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 140/287 (48%), Gaps = 35/287 (12%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
K +I +G+G+GKT L + +W +STRP ++ A + QL + LWAE++KWLS
Sbjct: 44 KVSIRSGQGVGKTGLESIATVWYLSTRPFPKVVATAPTRQQLYDVLWAEIAKWLSNSKVE 103
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
E ++ G+ + + T RT +P+ G H + + V D
Sbjct: 104 KLLEWTKTKVYMKGF------------EERWWATARTAV--KPENMQGFHEDYMLFVV-D 148
Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT--- 255
EASG D I ++ILG + N+ ++ N R +G FYD N + +K +++ +
Sbjct: 149 EASGVADPIMEAILGTLSGAE-NKL-LLCGNPTRTSGTFYDSHNRDRDLYKTFKVSSLDS 206
Query: 256 -RT----VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
RT +E + +HEG SD R+ +LG+FP+ E ++ I +E + RE
Sbjct: 207 PRTSKDNIEMLKRKYHEG--------SDPWRVRVLGEFPKGESDSLISLEAVETSTIREV 258
Query: 311 -IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
I + Y L +G DIA G D+T++ R G + + +S K ET
Sbjct: 259 NISNDYI-LNIGADIARYGDDETIIAPRIGGKVFDLLTYSKKDTMET 304
>gi|253578914|ref|ZP_04856185.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849857|gb|EES77816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 473
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 149/293 (50%), Gaps = 41/293 (13%)
Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
+P WQ + A D+ +NP K +I +G+G+GKT L A + LW ++ P
Sbjct: 17 EPDEWQAQ--AARDLA-------ANP---KVSIKSGQGVGKTGLEAAVFLWFVTCFPHPR 64
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
I+ A ++ QL + LW+E+SKW+S E+ S+ L + Y ++ + K +
Sbjct: 65 IVATAPTKQQLHDVLWSEISKWMSK------SELLSILLKWTKTYVYMVGE-----EKRW 113
Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
RT + +P+ G H + M DEASG D I ++ILG + N N+ ++ N
Sbjct: 114 FGVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLSGAN-NKL-LLCGN 168
Query: 230 TRRLNGWFYDIFNIPLEDWKRYQI----DTRT-VEGIDSGFHEGIISRYGLDSDVARIEI 284
+ +G FYD +K + + TRT E IDS ++ +YG DS+V R+ +
Sbjct: 169 PTKTSGTFYDSHTRDRALYKCHTVSSMDSTRTNKENIDS-----LVRKYGWDSNVVRVRV 223
Query: 285 LGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAP--LIMGCDIAGEGGDKTVV 334
G+FP QE + FIP + IE+ S+ +DD + +G D+A G D+T++
Sbjct: 224 RGEFPNQEDDVFIPLSLIEQCSSKLLELDDADGMQFVSLGVDVARFGDDETII 276
>gi|255282256|ref|ZP_05346811.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
gi|255267204|gb|EET60409.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
Length = 506
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 33/289 (11%)
Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
+P WQ + + +D+ S V A+ +G+G+GKT + A +LW +S
Sbjct: 49 EPDEWQRDAL--MDLAEESRV----------AVKSGQGVGKTGIEAVAVLWFLSCFRYAR 96
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
++ A + QL + LW+E++KW P + ++ G+ K
Sbjct: 97 VVATAPTRQQLHDVLWSEIAKWQERSPLLKAILRWTKTYVYVKGY------------EKR 144
Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
+ RT + +P+ G H + M DEASG D I +++LG + N +M
Sbjct: 145 WFAVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAVLGTLS--GGNNKLLMCG 199
Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
N R G FYD F + + + + D + +I +YG DS++ R+ + G F
Sbjct: 200 NPTRTTGTFYDAFTKDRSIFACHTVSSLDSSRTDKNNIDALIRKYGEDSNLVRVRVKGLF 259
Query: 289 PQQEVNNFIPHNYIEEAMSRE---AIDDLYAPLIMGCDIAGEGGDKTVV 334
P+Q+ + FI I++ SR+ A +I+G D+A G D+TV+
Sbjct: 260 PKQDDDVFISQELIDQCTSRQYELPESRGMAQVILGVDVARYGNDETVI 308
>gi|308069786|ref|YP_003871391.1| hypothetical protein PPE_03030 [Paenibacillus polymyxa E681]
gi|305859065|gb|ADM70853.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 452
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 121/260 (46%), Gaps = 28/260 (10%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
+ ++ +G+G+GKT L A LW +S P +IC A + QL + LWAE++KW S P
Sbjct: 22 RVSVRSGQGVGKTGLEAATALWFLSCFPYPKVICTAPTRQQLHDVLWAEINKWQSKSP-- 79
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
+ L + Y + E+ + T RT + +P+ G H + M D
Sbjct: 80 --VLKRILKWTKTKIYMKNYEE-------RWFATARTAT--KPENMQGLHEDY-MLFIVD 127
Query: 199 EASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
EASG D I ++ILG + E N +M N + +G FYD N D+K TR
Sbjct: 128 EASGVADPIMEAILGTLSGEFNK---ILMCGNPTKTSGVFYDSHNKDRADYK-----TRK 179
Query: 258 VEGIDSGFHEG-----IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
V +DS + +YG SDV R+ + G+FP+ + FI E A ++
Sbjct: 180 VSCLDSPRTSKDNIAMLKRKYGEGSDVWRVRVEGEFPRGGSDTFISLEVAEFAAKEVKLE 239
Query: 313 DLYAPLIMGCDIAGEGGDKT 332
L +G D+A G D+T
Sbjct: 240 PTGDMLTIGVDVARFGDDET 259
>gi|289578588|ref|YP_003477215.1| hypothetical protein Thit_1395 [Thermoanaerobacter italicus Ab9]
gi|289528301|gb|ADD02653.1| conserved hypothetical protein [Thermoanaerobacter italicus Ab9]
Length = 460
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 140/318 (44%), Gaps = 52/318 (16%)
Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
+KG P E Q E ++AV H + A+ A G+GKT + AW+ L
Sbjct: 27 LKGDPWEK-------QEEILKAVRDHK------------RVAVRACHGVGKTKVAAWVAL 67
Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
W + T +I A + Q++N LW E+ + S P G ++L+
Sbjct: 68 WFLYTHHNSKVITTAPTWHQVENLLWREIHA------------AHAASRIPLG--GKVLQ 113
Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
+ + + + + T ++P+ F G H H + + DEASG + GF T +
Sbjct: 114 TQIELGEQWFALGLST---DKPERFQGFHAEHILLIV-DEASGVEQYTFDAAEGFLTSIG 169
Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG-----------FHEG 268
++ N +L+G FY+ F PL + + I + +G + E
Sbjct: 170 AK--LLLIGNPTQLSGEFYNAFRSPL--YHKIHISAFDSPNLKAGKIVRPYLVTPEWVED 225
Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328
++G DS + +LG+FP+Q + IP +IE A R + + P+ +G D+A G
Sbjct: 226 KRLKWGEDSPLWYSRVLGEFPEQGNDTLIPLAWIEAAQQRWHMTEAGEPVEIGADVARYG 285
Query: 329 GDKTVVVFRRGNIIEHIF 346
D TV++ RRG+ E ++
Sbjct: 286 TDTTVIMLRRGDKAEIVY 303
>gi|167767949|ref|ZP_02440002.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
gi|167710278|gb|EDS20857.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
gi|291560988|emb|CBL39788.1| hypothetical protein CL2_30180 [butyrate-producing bacterium SSC/2]
Length = 473
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 133/302 (44%), Gaps = 43/302 (14%)
Query: 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
F P WQ E A+ +NS K I +G+G+GKT A +LW +S
Sbjct: 30 FFYPDEWQKEAAFALR-------DNS-----KVTIKSGQGVGKTGFEAATLLWFLSCFEN 77
Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPH----RHWFEMQ-SLSLHPSGWYAELLEQSM 162
++ A + QL + LWAEVSKW S P W + + S+ WYA
Sbjct: 78 ARVVATAPTLHQLNDVLWAEVSKWQSKSPLLKEILQWTKTKISMIGSKERWYA------- 130
Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
RT + P+ G H + M DEASG D I ++ILG T N
Sbjct: 131 ---------VARTATT--PENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLT--GSNN 176
Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
++ N + +G FYD + + +++ + + + +I +YG +S+V R+
Sbjct: 177 KLLLCGNPTKASGTFYDSHTSDRKLYYCITVNSAESKRTNKDNIDSLIRKYGEESNVVRV 236
Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
+ G FP+Q+ + ++P +E ++ E I D+ +G D+A G D TV+ N
Sbjct: 237 RVKGLFPKQDDDVYMPLEMLEASIILEEIPPADI---CTLGVDVARFGDDDTVIARNMNN 293
Query: 341 II 342
I
Sbjct: 294 KI 295
>gi|315122636|ref|YP_004063125.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496038|gb|ADR52637.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 301
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 26 LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQ----LEFMEAVDVHCHSNVNNSNPTIFKCA 81
L+F ++ R WG +G PL + P WQ LE E ++ + + +FK A
Sbjct: 29 LAFTKYMYR---WGEEGTPLANCKGPRAWQTEVFLELAEFIEKNKEAKRLGKPLQVFKLA 85
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
I++ RGIGKT L AW+ W +STR G +++ ANS+ Q K T +AE+ +W S+ + H+F
Sbjct: 86 IASARGIGKTALVAWITYWFLSTRIGCTVVISANSDDQCKTTSFAEIRRWHSLAKNAHFF 145
Query: 142 EMQSLSLHPSG----WYAELLEQSM 162
E +G W AE + +++
Sbjct: 146 EANIAEALLAGGCSPWQAEPVAKTL 170
>gi|307308936|ref|ZP_07588619.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
BL225C]
gi|306900570|gb|EFN31183.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
BL225C]
Length = 472
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 129/295 (43%), Gaps = 30/295 (10%)
Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
+C + NN T+ G GKT ++A + W + + + A SE+ +K+ +
Sbjct: 40 YCEAFKNNQTITV-----KGSSGWGKTFISAISLWWSLIVFDPVKVTIFAPSESTIKSGI 94
Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM-GIDSKHYTITC----RTYSEE 179
W E +Q L + + + EL E S I K TC R S++
Sbjct: 95 WNE---------------LQVLYSNMAPLFRELFEVSATKIFRKSRGETCWAEYRLVSKD 139
Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
G H+ + + V DEASG D+I L P ++ SN + +G+F+
Sbjct: 140 NIAAARGFHSKNNI-VIADEASGIEDVIFTGALLNVLNDGPGAKVVLVSNPDKASGFFFK 198
Query: 240 IFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQFPQQEVNNF 296
+ P +DW + R G E YG + + ++ G+FP +V+
Sbjct: 199 TWRDPELSKDWIKVHGSIRDKPNYTPGEEERFARLYGGVTSRDYLTLVEGEFPLSDVDGL 258
Query: 297 IPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
I +++EA++ ++AI + AP+I G D AG G DK+V+ R N++ +W+
Sbjct: 259 ISREFLDEAVTNKDAIPNPKAPIIWGLDPAGAGKDKSVLAIRHDNVLRGFEEWAG 313
>gi|262316909|emb|CBA18135.1| putative terminase B [Paenibacillus phage phiBP]
Length = 248
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 16/208 (7%)
Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
++ +G+G+GKT L A + LW + P ++C A + QL + LWAE+SKW S P
Sbjct: 57 SVRSGQGVGKTALEAAISLWFLCCFPFPRVVCTAPTRQQLNDVLWAEISKWQSQSP---- 112
Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
+ L + Y + E+ + T RT + +P+ G H + M DEA
Sbjct: 113 ILKRILKWTKTKIYMKNYEE-------RWFATARTAT--KPENMQGFHEDY-MLFIVDEA 162
Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
SG D I +I G + + N+ + M N + +G+F+D N ++ +++
Sbjct: 163 SGVDDRIMAAIFGTLSG-DYNKLF-MCGNPTKTSGFFFDSHNRDRAIYRTHRVSCLDSPR 220
Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQF 288
E + ++YG SDV R+ +LG+F
Sbjct: 221 TSKENIEMLKAKYGEGSDVWRVRVLGEF 248
>gi|83593922|ref|YP_427674.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
gi|83576836|gb|ABC23387.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
Length = 505
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 122/300 (40%), Gaps = 39/300 (13%)
Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
P K + AG G+GKTT A + W + C A + +QL+ LW+E+++
Sbjct: 34 PAGAKVTVRAGHGVGKTTATAAAIWWHLECFDYSKTPCTAPTASQLEQILWSELARLRRR 93
Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGI------DSKHYTITCRTYSEERPDTFVGPH 188
Q L P+ E L G + + + RT ++PD G H
Sbjct: 94 ----ADARAQGTGL-PAALRLEALFAVSGRAIADRGTPREWFVVARTARRDQPDALQGFH 148
Query: 189 ----------------NTHGMAVF--NDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
+ G A+ +EASG PD + + G + +P +M N
Sbjct: 149 ASDIDLEAGAGPRLSAKSGGAALMFVIEEASGVPDAVFEVAEGALS--SPGARLLMVGNP 206
Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
R G+F + ++ +D G+ G++ +YG +S+V R+ G FP+
Sbjct: 207 TRNTGFFARSHKRDRASFTALRLRCADSPLVDPGYRAGLVRKYGAESNVVRVRADGAFPR 266
Query: 291 QEVNNFIPHNYIEEAM-----SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
Q+ + I E A+ +R A +D +G D+A G D+TV + R G ++ I
Sbjct: 267 QDDDVLIALETAEAALARPLPARMATEDERR---LGVDVARFGDDRTVFLLRIGPVVGAI 323
>gi|332980681|ref|YP_004462122.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
gi|332698359|gb|AEE95300.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
Length = 486
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 140/351 (39%), Gaps = 80/351 (22%)
Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
++P + Q++ + AV NP + A+ + G GK+ + ++LW + +
Sbjct: 28 TRPWKKQIDIISAV---------RDNP---RTAVRSCHGAGKSFIAGQVILWFLYSFYPS 75
Query: 109 SIICIANSETQLKNTLWAEVSKWL---------SMLPHRHWFEMQSLSLHPSGWYAELLE 159
++ A + Q++ +W EV ++LP R E+Q + WYA L
Sbjct: 76 IVLSTAPTWRQVEKLIWKEVRASYRRSKVPLGGNLLPKRP--EIQIIQ---DEWYAVGL- 129
Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
S PD F G H + + V DEA+G P+ I ++I G T +
Sbjct: 130 -----------------STNEPDRFQGFHEENILVVV-DEAAGVPEEIFEAIEGVLTSEH 171
Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS-GFHEGII-------- 270
++ N + G FY+ F P W+ I T + G E I
Sbjct: 172 AR--LLLLGNPTSVGGTFYNAFRTP--GWENISISAFTTPNFTAFGITEDDIINKTWESK 227
Query: 271 --------------------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
R+G +S + +LGQFP + + IP +IE AM+R
Sbjct: 228 ITNSLPNPKLITPAWVADKYRRWGPNSPAYQARVLGQFPSEGEDTLIPLAWIEAAMARWE 287
Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
P+ +G D+A G DKTV+ RRG + + ++ + ET GC
Sbjct: 288 DTPEGEPIEIGVDVARFGSDKTVIAARRGQKVLPLNVYAKQDTMET--VGC 336
>gi|269119479|ref|YP_003307656.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
gi|268613357|gb|ACZ07725.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
Length = 499
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 128/310 (41%), Gaps = 52/310 (16%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--------K 130
+ ++ AG GK++L + + + TRP +I A + QLK WAEV+ K
Sbjct: 47 RLSVPAGHSTGKSSLAGGLTTYWLITRPKSRVIVTAPTYRQLKTIYWAEVNKIYNRSKLK 106
Query: 131 WLSMLP-------------HRHWFEMQSLSLHPSGWYA------ELLEQSM---GI---- 164
L++ R WF + + P G E++EQ M GI
Sbjct: 107 QLNLFEINDKIMRINDKDLKREWFALPVTASTPEGMQGQHGDKTEVIEQIMKHLGIEEIG 166
Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP-NRF 223
D + I + E+ + + + V DE+SG + I + + G T+ + F
Sbjct: 167 DDETIEIVSQILRGEKQIEGLTKEDKEKLLVMVDESSGVKNEIFEVLEG--TDYDKLVLF 224
Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-----GIISRYGLDSD 278
MT NT G+FY+ P K Y++ T+ +S F + + YG DS+
Sbjct: 225 GNMTKNT----GYFYESVYNP--KSKFYKV---TMSSYNSPFMKKEQIHDLEETYGPDSN 275
Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVVFR 337
V R+ + G+ P N+ N I+ A R Y + +G D+ G GGD + + +
Sbjct: 276 VVRVRLKGEAPDGNENSIFSSNKIDSAFQRSLSLSEYETIKLGVDVGKGSGGDSSTIYEK 335
Query: 338 RGNIIEHIFD 347
+ N + D
Sbjct: 336 KDNRVRKKLD 345
>gi|315649222|ref|ZP_07902312.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
gi|315275441|gb|EFU38799.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
Length = 189
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 25/163 (15%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL--SMLP 136
+ ++ +G+G+GKT L A +++W + RP ++C A ++ QL + LW EVSKWL SM+
Sbjct: 47 RTSVRSGQGVGKTGLEAALVIWFLCCRPNPKVVCTAPTKQQLHDVLWTEVSKWLENSMVK 106
Query: 137 H-RHWFEMQSLSL-HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
+ W + + + H W+A T RT + +P+ G H + M
Sbjct: 107 NLLKWTKTKVYMIGHEQRWFA----------------TARTAN--KPENMQGFHEDY-ML 147
Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
DEASG D I ++ILG + N+ +M N R +G F
Sbjct: 148 FIVDEASGVSDPIMEAILGTLSGAE-NKL-LMCGNPTRTSGVF 188
>gi|304399103|ref|ZP_07380971.1| DNA packaging protein [Pantoea sp. aB]
gi|304353343|gb|EFM17722.1| DNA packaging protein [Pantoea sp. aB]
Length = 503
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 137/316 (43%), Gaps = 32/316 (10%)
Query: 28 FKNFVMRF-FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
+++ V+R+ + W + +E F WQ E + +N+ T + +++G
Sbjct: 16 WRDMVIRYRYNWALA--VVELFGMIPTWQQEEI----------MNSVQETGSQTTVTSGH 63
Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
G GK++L A M+L + P +I +AN Q+K ++ V + + RH +
Sbjct: 64 GTGKSSLTAMMLLIYMIMYPDARVIIVANKIGQVKTGVFKYVKTYWANAARRHPWLQNYF 123
Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
+L + +Y + GI + + C+ Y + G H H + + DEASG D
Sbjct: 124 TLTDTMFYE---KSRKGI----WEVLCKGYRLGNEEALAGEHAAHILLIL-DEASGISDK 175
Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRYQIDTRTVE 259
+ G TE + NR +M+ TR +G+FYD + P W +++
Sbjct: 176 AIAIMRGALTEED-NRMLMMSQPTRP-SGYFYDSHHSLARHPDNPNGFWNAIVLNSEEAP 233
Query: 260 GIDSGF-HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
+ F E ++ G DS +++LG+FP+ + + + A R+ +
Sbjct: 234 HVTLKFIREKLVEYGGRDSLEYMVKVLGRFPRNVSGYLLGRDECDRAARRKVYLEKGWGW 293
Query: 319 IMGCDIAGEGGDKTVV 334
+ D+ G G DK+++
Sbjct: 294 VATADV-GNGRDKSIL 308
>gi|48697461|ref|YP_024846.1| Pas60 [Actinoplanes phage phiAsp2]
gi|47679679|gb|AAT36808.1| Pas60 [Actinoplanes phage phiAsp2]
Length = 492
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 127/309 (41%), Gaps = 31/309 (10%)
Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
P W + ++ + ++ P + A+ G+GK+ A ++ W +TR M
Sbjct: 22 SPTAWAADCLDVRLAGYQGEILDAVPRERRVAVRGPHGLGKSFSGAILVNWFATTRDLMG 81
Query: 110 ----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
II A++ L+ LW E+ KW + +L P ELL+ + +
Sbjct: 82 KDWKIITTASAWRHLEVYLWPEIHKWAGRI------NFVALGRAPYNPRTELLDLRLKL- 134
Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT----ELNPN 221
H T + +P+ G H + + DEA P SI G F+ ++ N
Sbjct: 135 -THGAATA--VASNQPERIEGAHAEELLYLL-DEAKIVPPATWDSIEGAFSNAGVDVADN 190
Query: 222 RFWIMTSNTRRLNGWFYDIFNIP--LEDW--KRYQIDTRTVEG-IDSGFHEGIISRYGLD 276
+ S +G FYDI EDW + ++ G I + + S++G D
Sbjct: 191 AYAFAMSTPGAPSGRFYDIHRRAPGYEDWWTRHVTLEEAIASGRISRAWADQRRSQWGSD 250
Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAM------SREAIDDLYAPLIMGCDIAGEGGD 330
S V +LG+F + ++ IP ++E A+ R+ PL G D+ G GGD
Sbjct: 251 SAVFHNRVLGEFHASDEDSVIPLAWLEAAIERWHEWDRQGRPSPGGPLWTGVDV-GRGGD 309
Query: 331 KTVVVFRRG 339
+TV+ R G
Sbjct: 310 ETVLAARDG 318
>gi|322656964|gb|EFY53248.1| DNA packaging protein [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
Length = 411
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 19/264 (7%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
+ +++G G GK++L A ++L + P +I +AN Q+K ++ V ++ + R
Sbjct: 56 RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
H + L + +Y GI + + C+ Y + G H H + + D
Sbjct: 116 HGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAHLLLIL-D 167
Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
EASG D + G TE + NR +M S R +G+FYD + P W
Sbjct: 168 EASGISDKAIGVMTGALTEED-NRM-LMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 225
Query: 252 QIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
+++ + F + + Y G DS +++LGQFP++ + + + A R+
Sbjct: 226 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 285
Query: 311 IDDLYAPLIMGCDIAGEGGDKTVV 334
+ + + D+ G G DK+V+
Sbjct: 286 LLEKNWGWVATADV-GNGRDKSVL 308
>gi|323179619|gb|EFZ65182.1| terminase B protein [Escherichia coli 1180]
Length = 453
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 19/264 (7%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
+ +++G G GK++L A ++L + P +I +AN Q+K ++ V ++ + R
Sbjct: 7 RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 66
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
H + L + +Y GI + + C+ Y + G H H + + D
Sbjct: 67 HGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAHLLLIL-D 118
Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
EASG D + G TE + NR +M S R +G+FYD + P W
Sbjct: 119 EASGISDKAIGVMTGALTEED-NRM-LMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 176
Query: 252 QIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
+++ + F + + Y G DS +++LGQFP++ + + + A R+
Sbjct: 177 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 236
Query: 311 IDDLYAPLIMGCDIAGEGGDKTVV 334
+ + + D+ G G DK+V+
Sbjct: 237 LLEKNWGWVATADV-GNGRDKSVL 259
>gi|56266666|gb|AAV84947.1| DNA pacase B subunit [Enterobacteria phage D6]
Length = 502
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 19/264 (7%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
+ +++G G GK++L A ++L + P +I +AN Q+K ++ V ++ + R
Sbjct: 56 RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
H + L + +Y GI + + C+ Y + G H H + + D
Sbjct: 116 HGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAHLLLIL-D 167
Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
EASG D + G TE + NR +M S R +G+FYD + P W
Sbjct: 168 EASGISDKAIGVMTGALTEED-NRM-LMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 225
Query: 252 QIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
+++ + F + + Y G DS +++LGQFP++ + + + A R+
Sbjct: 226 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 285
Query: 311 IDDLYAPLIMGCDIAGEGGDKTVV 334
+ + + D+ G G DK+V+
Sbjct: 286 LLEKNWGWVATADV-GNGRDKSVL 308
>gi|323948959|gb|EGB44853.1| terminase B protein [Escherichia coli H252]
Length = 502
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 116/264 (43%), Gaps = 19/264 (7%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
+ +++G G GK++L A ++L + P +I +AN Q+K ++ V ++ + R
Sbjct: 56 RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
H + L + +Y GI + + C+ Y + G H H + + D
Sbjct: 116 HGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAHLLLIL-D 167
Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
EASG D + G TE + NR +M S R +G+FYD + P W
Sbjct: 168 EASGISDKAIGVMTGALTEED-NRM-LMLSQPTRPSGYFYDSHHSRAKTPDNPKGIWTAI 225
Query: 252 QIDTRTVEGIDSGF-HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
+++ + F E ++ G DS +++LGQFP++ + + + + R+
Sbjct: 226 VLNSEESPFVTPQFIKEKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRSARRKV 285
Query: 311 IDDLYAPLIMGCDIAGEGGDKTVV 334
+ + + D+ G G DK+V+
Sbjct: 286 LLEKNWGWVATADV-GNGRDKSVL 308
>gi|228924410|ref|ZP_04087639.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228835241|gb|EEM80653.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 293
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
+ N R +G FYD N + +K +++ + E + +YG SDV R+ +L
Sbjct: 3 LCGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVL 62
Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
G+FP+ E + FIP +E+A S + ++ L +G D+A G D+TV+ R GN + +
Sbjct: 63 GEFPKAEADAFIPLEIVEQAASCK-VEPTGETLDLGVDVARFGDDETVIAPRIGNKVFKL 121
Query: 346 FDWSAKLIQET 356
+ + ET
Sbjct: 122 LNHYKQDTMET 132
>gi|216906085|ref|YP_002333619.1| terminase [Abalone shriveling syndrome-associated virus]
gi|216263178|gb|ACJ72002.1| terminase [Abalone shriveling syndrome-associated virus]
Length = 507
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 128/313 (40%), Gaps = 35/313 (11%)
Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAI--SAGRGIGKTTLNAWMMLWLISTRPGMSII 111
WQLE VD NS+ F CAI S G G GKT L+ + +W PG
Sbjct: 51 WQLEI---VDYIAKFFRKNSDEKHFVCAIAVSGGNGTGKTKLSKALNIWRFCCHPGSRQF 107
Query: 112 CIANSETQLKNT----LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
+ NSE Q K T L +SK LS + ++S + + S A+ E D
Sbjct: 108 ILTNSERQTKRTGFTMLVRRISKLLSCIA-----ALESSAYYYSPAVADKPEVRTN-DMW 161
Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFN-DEASGTPDIINKSILGFFTELNPNRFWIM 226
T ++ +E G H H M F+ DE++ D + +++ +T+
Sbjct: 162 DVTYLLQSSTEA---ALSGLH--HPMMTFSFDESTYFNDHVWQALENMWTQ--GQVLCFC 214
Query: 227 TSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID-------SGFHEGIISRYGLDSD 278
T N + N +F +FN L + TR V ++ I YG
Sbjct: 215 TGNPSHDNNNYFARLFNKSLHKKDSLWL-TRCVSLLELPLKYRNDARARYIEEHYGKTHP 273
Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCD--IAGEGGDKTVVV 335
+LGQFP++ N I EAM RE ++ ++ P+IMG D I+ G + +
Sbjct: 274 RYIASVLGQFPKKNTCNPFDITAISEAMEREVREEFIHHPVIMGIDVSISANNGSASAIC 333
Query: 336 FRRGNIIEHIFDW 348
R G + + ++
Sbjct: 334 VREGTAVRVLREY 346
>gi|260871239|ref|YP_003238019.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
gi|257767818|dbj|BAI39311.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
Length = 494
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 121/268 (45%), Gaps = 27/268 (10%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV-SKWLSMLPHR 138
++++G G GK+ + + + + I PG +I +AN Q+ + ++ + S W + +
Sbjct: 52 TSVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRF 111
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI---TCRTYSEERPDTFVGPHNTHGMAV 195
W + S + E+ + + +TI +CR+ +EE G H H + +
Sbjct: 112 PWLSKYFILTETS--FFEVTGKGV------WTILIKSCRSGNEE---ALAGEHADHLLYI 160
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDW 248
DEASG D I G T + NR +++ TR +G+FYD + P +
Sbjct: 161 I-DEASGVSDKAFSVITGALTGKD-NRILLLSQPTRP-SGYFYDSHHRLAIRPGNPDGLF 217
Query: 249 KRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
+++ +D+ F ++ Y G D+ + I++ G+FP+ + + + +E A
Sbjct: 218 TAIILNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATR 277
Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
R+ + D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWVACVDVAGGTGRDKSVI 305
>gi|331649955|ref|ZP_08351031.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M605]
gi|331041212|gb|EGI13366.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M605]
Length = 494
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 120/268 (44%), Gaps = 27/268 (10%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV-SKWLSMLPHR 138
++++G G GK+ + + + + I PG +I +AN Q+ + ++ + S W + +
Sbjct: 52 TSVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRF 111
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI---TCRTYSEERPDTFVGPHNTHGMAV 195
W + S + E+ + + +TI +CR +EE G H H + +
Sbjct: 112 PWLSKYFILTETS--FFEVTGKGV------WTILIKSCRPGNEE---ALAGEHADHLLYI 160
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDW 248
DEASG D I G T + NR +++ TR +G+FYD + P +
Sbjct: 161 I-DEASGVSDKAFSVITGALTGKD-NRILLLSQPTRP-SGYFYDSHHRLAIRPGNPDGLF 217
Query: 249 KRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
+++ +D+ F ++ Y G D+ + I++ G+FP+ + + + +E A
Sbjct: 218 TAIILNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATR 277
Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
R+ + D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWVACVDVAGGTGRDKSVI 305
>gi|46401730|ref|YP_006576.1| PacB [Enterobacteria phage P1]
gi|301646767|ref|ZP_07246623.1| putative terminase B protein [Escherichia coli MS 146-1]
gi|129547|sp|P27753|TERL_BPP1 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein B; AltName: Full=PACase B protein; AltName:
Full=Terminase B protein; AltName: Full=Terminase large
subunit
gi|68597607|sp|Q5XLR0|TERL_BPP7 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein B; AltName: Full=PACase B protein; AltName:
Full=Terminase B protein; AltName: Full=Terminase large
subunit
gi|33323612|gb|AAQ07582.1|AF503408_106 PacB [Enterobacteria phage P7]
gi|215636|gb|AAA21724.1| pacB [Enterobacteria phage P1]
gi|33338757|gb|AAQ14080.1| PacB [Enterobacteria phage P1]
gi|33338866|gb|AAQ14188.1| PacB [Enterobacteria phage P1]
gi|54112354|gb|AAV28854.1| PacB [Enterobacteria phage P7]
gi|301075042|gb|EFK89848.1| putative terminase B protein [Escherichia coli MS 146-1]
Length = 494
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 120/268 (44%), Gaps = 27/268 (10%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV-SKWLSMLPHR 138
++++G G GK+ + + + + I PG +I +AN Q+ + ++ + S W + +
Sbjct: 52 TSVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRF 111
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI---TCRTYSEERPDTFVGPHNTHGMAV 195
W + S + E+ + + +TI +CR +EE G H H + +
Sbjct: 112 PWLSKYFILTETS--FFEVTGKGV------WTILIKSCRPGNEE---ALAGEHADHLLYI 160
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDW 248
DEASG D I G T + NR +++ TR +G+FYD + P +
Sbjct: 161 I-DEASGVSDKAFSVITGALTGKD-NRILLLSQPTRP-SGYFYDSHHRLAIRPGNPDGLF 217
Query: 249 KRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
+++ +D+ F ++ Y G D+ + I++ G+FP+ + + + +E A
Sbjct: 218 TAIILNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATR 277
Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
R+ + D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWVACVDVAGGTGRDKSVI 305
>gi|161789175|ref|YP_001595730.1| PacB [Vibrio sp. 0908]
gi|161761461|gb|ABX77106.1| PacB [Vibrio sp. 0908]
Length = 572
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 11/163 (6%)
Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
+N P + ++++G G GK+ L A + L I T P + ANS Q+ N +++ +
Sbjct: 53 INALTPVGARVSVASGHGTGKSHLTAALCLHFIITHPESLCMLTANSLDQVTNVVFSYIK 112
Query: 130 K-WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
+ W+ + + W E Q + +YA+ + I K TC +EE G H
Sbjct: 113 RCWVKICQRQPWLE-QYFVITAKSFYAKGYKGVWQIFGK----TCSKGNEE---GLAGQH 164
Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
M V DEASG D + + G TE N N+ +++ TR
Sbjct: 165 RRDYMVVV-DEASGVSDRAFEVLRGALTEDN-NKMLLISQFTR 205
>gi|56266643|gb|AAV84926.1| DNA pacase B subunit [Enterobacteria phage phiW39]
Length = 494
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 114/266 (42%), Gaps = 21/266 (7%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS-KWLSMLPH 137
K ++S+G G GK+ + + M++ I PG I +AN Q+ ++ + W +
Sbjct: 51 KTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSR 110
Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
W L + +Y E+ + + +T+ + + + G H H + +
Sbjct: 111 FPWL-ADYFVLTETAFY-EITGKGV------WTVVPKGFRLGSEEALAGEHADHLLYII- 161
Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKR 250
DEASG D I G T + NR +++ TR +G+FYD + P +
Sbjct: 162 DEASGVSDRAFGIITGALTGQD-NRILLLSQPTRP-SGYFYDTHHKLAKRPGNPDGVYTA 219
Query: 251 YQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
+++ + F + ++ Y G D+ + I++ G FP+ + + + +E A R+
Sbjct: 220 ITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRK 279
Query: 310 AIDDLYAPLIMGCDIA-GEGGDKTVV 334
+ D+A G G DK+V+
Sbjct: 280 VKIAKGWGWLACVDVAGGTGRDKSVI 305
>gi|324111095|gb|EGC05081.1| terminase B protein [Escherichia fergusonii B253]
Length = 494
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 114/266 (42%), Gaps = 21/266 (7%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS-KWLSMLPH 137
K ++S+G G GK+ + + M++ I PG I +AN Q+ ++ + W +
Sbjct: 51 KTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSR 110
Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
W L + +Y E+ + + +T+ + + + G H H + +
Sbjct: 111 FPWL-ADYFVLTETAFY-EVTGKGV------WTVVPKGFRLGSEEALAGEHADHLLYII- 161
Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKR 250
DEASG D I G T + NR +++ TR +G+FYD + P +
Sbjct: 162 DEASGVSDRAFGIITGALTGQD-NRILLLSQPTRP-SGYFYDTHHKLAKRPGNPDGVYTA 219
Query: 251 YQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
+++ + F + ++ Y G D+ + I++ G FP+ + + + +E A R+
Sbjct: 220 ITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRK 279
Query: 310 AIDDLYAPLIMGCDIA-GEGGDKTVV 334
+ D+A G G DK+V+
Sbjct: 280 VKIAKGWGWLACVDVAGGTGRDKSVI 305
>gi|312964323|ref|ZP_07778627.1| terminase B protein [Escherichia coli 2362-75]
gi|331655801|ref|ZP_08356790.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M718]
gi|312291036|gb|EFR18910.1| terminase B protein [Escherichia coli 2362-75]
gi|323186470|gb|EFZ71817.1| terminase B protein [Escherichia coli 1357]
gi|323969205|gb|EGB64507.1| terminase B protein [Escherichia coli TA007]
gi|325495624|gb|EGC93488.1| DNA pacase B subunit [Escherichia fergusonii ECD227]
gi|331046575|gb|EGI18664.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M718]
Length = 494
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 114/266 (42%), Gaps = 21/266 (7%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS-KWLSMLPH 137
K ++S+G G GK+ + + M++ I PG I +AN Q+ ++ + W +
Sbjct: 51 KTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSR 110
Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
W L + +Y E+ + + +T+ + + + G H H + +
Sbjct: 111 FPWL-ADYFVLTETAFY-EVTGKGV------WTVVPKGFRLGSEEALAGEHADHLLYII- 161
Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKR 250
DEASG D I G T + NR +++ TR +G+FYD + P +
Sbjct: 162 DEASGVSDRAFGIITGALTGQD-NRILLLSQPTRP-SGYFYDTHHKLAKRPGNPDGVYTA 219
Query: 251 YQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
+++ + F + ++ Y G D+ + I++ G FP+ + + + +E A R+
Sbjct: 220 ITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRK 279
Query: 310 AIDDLYAPLIMGCDIA-GEGGDKTVV 334
+ D+A G G DK+V+
Sbjct: 280 VKIAKGWGWLACVDVAGGTGRDKSVI 305
>gi|257459276|ref|ZP_05624390.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
gi|257443289|gb|EEV18418.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
Length = 431
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 108/275 (39%), Gaps = 35/275 (12%)
Query: 80 CAISAGR--GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
C I GR G K T NA + WL+ G I+ + LK L LP
Sbjct: 26 CTIEKGRRFGFTKGTANACIE-WLLE---GQKILWVDTIAANLKRYFERYFLPELRQLPK 81
Query: 138 RHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
W + Q L G Y + S ERP+ G + +
Sbjct: 82 ELWNWNAQDKQLKICGGYLDF------------------RSAERPENIEG--FGYDTVIL 121
Query: 197 NDEA--SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED---WKRY 251
N+ P + + +I + NPN + + N F+D+ + + W+ +
Sbjct: 122 NEAGIILKDPYLWDNAISPMLLD-NPNSRAFIGGVPKGKNK-FFDLAQRGMRNEKGWRNF 179
Query: 252 QIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
Q + + + +++ G DSDVAR EI G+F N+ IE A ++
Sbjct: 180 QFSSYDNPLLQKEEIDRLVAELGGADSDVARQEIFGEFLDTTSNSVFSLAAIEAAFRKQR 239
Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
D AP+I D+A EG D++V+ R+G+ +E +
Sbjct: 240 YFDAGAPVIWALDVAREGDDESVLCKRQGDSVEPL 274
>gi|168467778|ref|ZP_02701615.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|195629119|gb|EDX48493.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
Length = 494
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 115/265 (43%), Gaps = 19/265 (7%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
K ++S+G G GK+ + + M++ I PG I +AN Q+ ++ + S R
Sbjct: 51 KTSVSSGHGTGKSDMTSIMIMLFIIMFPGARAIIVANKIQQVMTGIFKYLKINWSTATSR 110
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
+ + L + +Y E+ + + +T+ + + + G H H + + D
Sbjct: 111 FPWLAEYFVLTDTSFY-EITSKGV------WTVVPKGFRLGNEEALAGEHADHLLYII-D 162
Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRY 251
EASG D + G T + NR +++ TR +G+FYD + P +
Sbjct: 163 EASGVSDKAFGIMTGALTGKD-NRILLLSQPTRP-SGYFYDTHHKLAKRPGNPNGIYTAI 220
Query: 252 QIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
+++ + F + ++ Y G DS + I++ G FP+ + + + +E A R+
Sbjct: 221 TLNSEESPLVTPEFIKMKLAEYGGRDSPMYLIKVRGLFPKTQDGFLLGRDEVERASRRKV 280
Query: 311 IDDLYAPLIMGCDIA-GEGGDKTVV 334
I D+A G G DK+V+
Sbjct: 281 KIAKGWGWIACVDVAGGTGRDKSVI 305
>gi|320103661|ref|YP_004179252.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
gi|319750943|gb|ADV62703.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
Length = 553
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 109/290 (37%), Gaps = 33/290 (11%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
++ G +GK+ L A + LW + T PG ++ A S+ L L+ E+ K L+ R
Sbjct: 68 VATGNAVGKSYLAAGLTLWWLYTHPGSLVVATAPSQGLLGTVLFRELQKALAA-SRRRGL 126
Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
+ + + L G C + + G H+ M V DEAS
Sbjct: 127 GLPGMVVGSDRGTPFSLRVGPGRRLAAEGWGCLGIATRGVERLAGRHHADLMVVV-DEAS 185
Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT------ 255
G + T LNP + ++ N F+ + L + I
Sbjct: 186 G----VQPEAWEALTSLNPRKLFV-CGNPLTPGTVFHKLHQRGLTEASDPSIPDHARGVA 240
Query: 256 --------------RTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
R+ G+ D GF ++G S + + G FP V+ I
Sbjct: 241 LTIPSTASPDINLERSPRGLADRGFIREAERQWGRGSPLWLSHVEGVFPTVAVHALIEPG 300
Query: 301 YIEEAMSREAIDDLYAP---LIMGCDI-AGEGGDKTVVVFR-RGNIIEHI 345
++++A S E P ++GCD+ AG G D+T +V R G I E I
Sbjct: 301 WLDQAASLERSQTYENPPGQPVLGCDLAAGVGADRTAIVVRDEGGIRELI 350
>gi|226940459|ref|YP_002795533.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715386|gb|ACO74524.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 272
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
W QID+RTVEG + YG +SD ++ + G FP FI + A
Sbjct: 14 WVARQIDSRTVEGTNKEQIAKWAEDYGEESDFFKVRVRGMFPSMSARQFISETDVSAAYG 73
Query: 308 REAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRG 339
R + YAP I+ D A EG D+ V+ R+G
Sbjct: 74 RALRPEQYQYAPKILTVDPAWEGDDEFVIGLRQG 107
>gi|148653111|ref|YP_001280204.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
gi|148572195|gb|ABQ94254.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
Length = 520
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
+ ++++G G GK+ + LW + P ++ A QL+ +W E++ L L +
Sbjct: 57 RTSVASGHGTGKSRSAGIIALWHLLFYPESVMLFTAPQIGQLRTVVWKEINICLQRLRNN 116
Query: 139 HWFEMQSLSLHPSGWYAE---LLEQSMGIDSKHYT--ITCRTYSEERPDTFVGPHNTHGM 193
GW A+ +L + + I T + +T + +P G H H M
Sbjct: 117 KAL----------GWLADYVVVLAEKIYIKGFKDTWFVFAKTAPKHQPTNIAGQHGDHYM 166
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
V+ DEA G D + + +G T N NR ++TS + G+FYD
Sbjct: 167 -VWADEACGIDDAVMEVAIGALTHEN-NRA-VLTSQPAKNTGFFYD 209
>gi|332974843|gb|EGK11758.1| hypothetical protein HMPREF9373_1714 [Psychrobacter sp. 1501(2011)]
Length = 520
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
+ ++++G G GK+ + LW + P ++ A QL+ +W E++ L L +
Sbjct: 57 RTSVASGHGTGKSRSAGIIALWHLLFYPESVMLFTAPQIGQLRTVVWKEINICLQRLRNN 116
Query: 139 HWFEMQSLSLHPSGWYAE---LLEQSMGIDSKHYT--ITCRTYSEERPDTFVGPHNTHGM 193
GW A+ +L + + I T + +T + +P G H H M
Sbjct: 117 KAL----------GWLADYVVVLAEKIYIKGFKDTWFVFAKTAPKHQPTNIAGQHGDHYM 166
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
V+ DEA G D + + +G T N NR ++TS + G+FYD
Sbjct: 167 -VWADEACGIDDAVMEVAIGALTHEN-NRA-VLTSQPAKNTGFFYD 209
>gi|226227228|ref|YP_002761334.1| hypothetical protein GAU_1822 [Gemmatimonas aurantiaca T-27]
gi|226090419|dbj|BAH38864.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 549
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 108/286 (37%), Gaps = 47/286 (16%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
A+++G G GKT L A ++LW I+ P +A Q + +W EV+ RH
Sbjct: 70 VAVASGTGTGKTFLEAVLLLWWIAVEPDSIATTVATKADQQEKGIWREVA--------RH 121
Query: 140 WFEMQSLSLHPSGWYAEL---LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
W Q + P L +E G + IT + E + V + + +
Sbjct: 122 WPRFQ--ACFPEAELTTLRIRMEPWRGDAWGAWGITAAPKAGEESSSAVQGLHAKRLLIL 179
Query: 197 NDEASGTPDIINKSILGFFT--------------ELNP-NRFWIMTSNTRRLNGWFYDIF 241
DE G P + +++ T + +P +F + T+R+
Sbjct: 180 VDETPGVPQPVMTALVNTATGEENVIAAFGNPDYQADPLGQF----AETKRVTA-----I 230
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISR---YGLDSDVARIEILGQFPQQEVNNFIP 298
I D + + G + I +R YG++S V + + G P+Q + I
Sbjct: 231 RISALDHPNVVLGVERIPGAATRLS--IATREDKYGVESGVYQSRVRGIAPEQSASALIH 288
Query: 299 HNYIEEAMSR-EAIDD---LYAPLIMGCDIA-GEGGDKTVVVFRRG 339
+ A R E++ P +G D+A E GDK V +G
Sbjct: 289 LAWCVAAADRAESVQHAALALGPKALGVDVAQSENGDKAAVAMGQG 334
>gi|189460514|ref|ZP_03009299.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
gi|189432758|gb|EDV01743.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
Length = 556
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 102/268 (38%), Gaps = 51/268 (19%)
Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
+ A ++ Q+KN + E+S+ + R + L+ + + ++
Sbjct: 124 KVALTAPTDRQVKNIMMPEISRLFNRAKARGVELIGKLNAY-----------DIRTNNDE 172
Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG-------FFTELNPN 221
+ +T E + + G H H M V EA+G D +I G NPN
Sbjct: 173 WFLTGFKADEHNHEAWSGFHAVHTMFVVT-EATGIGDDTFAAIEGNLQGDSRILLVFNPN 231
Query: 222 RFWIMTSNTRRLNGWF------------------------YDIFNIPLEDWKRYQIDTRT 257
+ + +++ + W YD LE+W
Sbjct: 232 KTVGYAAKSQKGDRWHKYRLNSLTAPNIASKKIIIPGQVDYDWVLDKLENWCEKISPDEI 291
Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR----EAIDD 313
+ +D EG R D+ R ++LG FP+ + + IP ++EEA R + +
Sbjct: 292 ISEMDDFEFEGQWYR---PEDLFRKKVLGLFPKVDEDTLIPRQWLEEAHERWKQAKGREP 348
Query: 314 LYAPL-IMGCDIAGEGGDKTVVVFRRGN 340
L A L I+G D+AG G D T V RR N
Sbjct: 349 LRADLNILGVDVAGMGRDATCYVLRRDN 376
>gi|283956317|ref|ZP_06373797.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
1336]
gi|283792037|gb|EFC30826.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
1336]
Length = 430
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
FY++ L D WK +Q + + + E I G DS+V + EI G+F
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEDSEVVKQEIYGEFIDSSS 223
Query: 294 NNFIPHNYIEEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA- 350
IE AMS+ + I+ + I G D+A G DK+V+ R+G I++ I +S
Sbjct: 224 AELFALTEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSVLAKRKGFIVDEIKKYSQL 283
Query: 351 -------KLIQETNQ-EGCPVG 364
+++ E NQ E P G
Sbjct: 284 GTMELANRILAEYNQSEDKPKG 305
>gi|154175204|ref|YP_001409090.1| Ppx/GppA family phosphatase [Campylobacter curvus 525.92]
gi|112803006|gb|EAU00350.1| phosphatase, Ppx/GppA family [Campylobacter curvus 525.92]
Length = 433
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 246 EDWKRYQIDT-----RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
+DW +QI + E ID E I G+DSDV + EI G+F N P +
Sbjct: 174 KDWVNFQISSFENPLLRKEEID----ELIAELGGVDSDVVKQEIYGEFLDTTTNALFPLS 229
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
IE A + + A I G D+A +G D++V+ R G ++++
Sbjct: 230 QIEAAFGKVRAYEPNAVQIWGLDVARDGDDESVLCVREGYHVKNL 274
>gi|226940437|ref|YP_002795511.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715364|gb|ACO74502.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 133
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 23/129 (17%)
Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL------HPSGWYAELLEQSMGI 164
+ AN++TQL+ EV KW + HWF+ QS S+ H W A+ +
Sbjct: 1 MITANTDTQLRTKTSPEVGKWQRLSITSHWFDPQSASIAARDKEHAKTWRADFV------ 54
Query: 165 DSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
+SE + F G HN + + DEAS D + + G T+
Sbjct: 55 ----------PWSEHNTEAFAGLHNKGKRIVLIFDEASAIADKVWEVAEGALTDEETEII 104
Query: 224 WIMTSNTRR 232
WI N R
Sbjct: 105 WIAFGNPTR 113
>gi|153951273|ref|YP_001397540.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|153951467|ref|YP_001398214.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938719|gb|ABS43460.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938913|gb|ABS43654.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 430
Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
FY++ L D WK +Q + + + E I G SDV R EI G+F
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGESSDVVRQEIYGEFIDSSS 223
Query: 294 NNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
+ IE AMS+ + + I G D+A G DK+V+ R+G +I+ + +S
Sbjct: 224 AELFSLSGIENAMSKNSFSTQKMQGENIWGLDVARYGDDKSVLAKRKGFVIDELKKYS 281
>gi|282880015|ref|ZP_06288737.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
5C-B1]
gi|281306129|gb|EFA98167.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
5C-B1]
Length = 459
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-------EAIDDLYAPLIMGCDIAGEGG 329
+D+ RI++LG FP+ + IP ++E A R + + YA + G D+AG G
Sbjct: 221 NDLFRIKVLGLFPKASEDTLIPFEWLELAHDRWKKLNAEDFVPRKYARV--GIDVAGMGR 278
Query: 330 DKTVVVFRRGNIIEHI 345
D + V R GN + I
Sbjct: 279 DSSCFVLRYGNYVPEI 294
>gi|57237579|ref|YP_178593.1| terminase B protein, putative [Campylobacter jejuni RM1221]
gi|57166383|gb|AAW35162.1| terminase B protein, putative [Campylobacter jejuni RM1221]
Length = 430
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGLD-SDVARIEILGQFPQQEV 293
FY++ L D WK +Q + + + +I G + S+V + EI G+F
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSS 223
Query: 294 NNFIPHNYIEEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA- 350
+ IE AMS+ + I+ + I G D+A G DK+ + R+G +I I +S
Sbjct: 224 AELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQL 283
Query: 351 -------KLIQETNQ-EGCPVG 364
K++ E NQ E P G
Sbjct: 284 GTIELANKILAEYNQSEDKPKG 305
>gi|315929403|gb|EFV08605.1| phosphatase, Ppx/GppA family [Campylobacter jejuni subsp. jejuni
305]
Length = 430
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGLD-SDVARIEILGQFPQQEV 293
FY++ L D WK +Q + + + +I G + S+V + EI G+F
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSS 223
Query: 294 NNFIPHNYIEEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA- 350
+ IE AMS+ + I+ + I G D+A G DK+ + R+G +I I +S
Sbjct: 224 AELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQL 283
Query: 351 -------KLIQETNQ-EGCPVG 364
K++ E NQ E P G
Sbjct: 284 GTIELANKILAEYNQSEDKPKG 305
>gi|298387330|ref|ZP_06996883.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|298259999|gb|EFI02870.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length = 500
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP---LIMGCDIAGEGGDKTV 333
+D+ RI++ G FP+ + IP+ +IE A R + Y P +G D+AG G D +V
Sbjct: 264 NDLFRIKVRGMFPKVAEDVLIPYEWIEIANKRWQENHPYRPRKSCKLGVDVAGMGRDNSV 323
Query: 334 VVFRRGNIIEHI 345
R GN +
Sbjct: 324 FCPRYGNYVSQF 335
>gi|292670767|ref|ZP_06604193.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292647388|gb|EFF65360.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 442
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 28/144 (19%)
Query: 221 NRFWIMTSNTRRLNGWFYDIFN------IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
N+F+ M + + GW+ I+ +P E+ K Q +E
Sbjct: 168 NQFYEMYQHAEKSAGWYSCIYRTDETGVLPAEELKDMQAQMTEME--------------- 212
Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKT 332
R E+L F + IP + + A +R DD L P+I+G D+A G D+T
Sbjct: 213 -----IRQELLCDFTASASDVVIPIDLVTAAANRLLKDDDVLGQPVILGVDVARFGDDRT 267
Query: 333 VVVFRRGNIIEHIFDWSAKLIQET 356
V+ R+G ++ + ++ ET
Sbjct: 268 VLCVRQGLWLKEVRTFTGLSTMET 291
>gi|225574768|ref|ZP_03783378.1| hypothetical protein RUMHYD_02845 [Blautia hydrogenotrophica DSM
10507]
gi|225037968|gb|EEG48214.1| hypothetical protein RUMHYD_02845 [Blautia hydrogenotrophica DSM
10507]
Length = 428
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 68/319 (21%), Positives = 137/319 (42%), Gaps = 36/319 (11%)
Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
C V+ S SAG G K+ A L + G ++ICI S+ +++ +
Sbjct: 10 CFREVDRSQKRYIVMKGSAGSG--KSVDTAQNYLLRLMQDKGRNLICIRKSDITNRDSTY 67
Query: 126 AEVS----KWLSMLPHRHWFEMQ---SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
AE++ + R+W Q SL+ P+G +++ + + + + + T+
Sbjct: 68 AELTGAAYRIFGDQVDRYWNIKQSPLSLTFRPNG--NQIIFRGVNDEKQREKLKSITFQR 125
Query: 179 ER-PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW--IMTSNTRRLNG 235
+ D ++ A F +II+ + G EL P++F+ MT N N
Sbjct: 126 GKLTDVWIEEATEITQADF--------EIIDDRLRG---ELPPDQFYQIRMTFNPVNKNH 174
Query: 236 WFYDI-FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
W + F+ P + + ID+ +H + R +D + +I LG + EV
Sbjct: 175 WIKKVFFDTPDSNVLTHHSTYLDNRFIDAAYHARMARRKEVDPEGYQIYGLGNWG--EVG 232
Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN---IIEHIFDW--- 348
I HN+ E +S + +DD Y + +G D + +++ + + I++ I+ +
Sbjct: 233 GLILHNWAVENIS-QNLDD-YDDIAIGQDFGFNHANAILLLGMKDDNIYILQEIYVFEKE 290
Query: 349 SAKLIQETNQEGCPVGSSI 367
+A++I ++G P+ ++
Sbjct: 291 TAEIIPLAIKDGIPIKRTM 309
>gi|291334627|gb|ADD94276.1| hypothetical protein Syncc9605_0456 [uncultured phage
MedDCM-OCT-S04-C231]
Length = 320
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 236 WFYDIFNIPLED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
WFYD++ ED W+R+ T +EG + HE +R LD+ R E F +
Sbjct: 96 WFYDLWCYVPEDETGEWQRWSYTT--IEGGNVSKHEVEAARAQLDNRTFRQEFEASF--E 151
Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
+ + ++ +E +S+EA D PL++G D
Sbjct: 152 NLTGLVAISFSDENISQEAKDISIQPLLLGVD 183
>gi|294085818|ref|YP_003552578.1| hypothetical protein SAR116_2251 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665393|gb|ADE40494.1| protein of unknown function DUF264 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 454
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 101/280 (36%), Gaps = 51/280 (18%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH---R 138
+ AGRG GKT A + WL + I + + + + S LS+ P+
Sbjct: 80 LMAGRGFGKTRAGAEWIRWLAQSGRARRIALVGETFDDARQVMVEGASGILSVCPNWARP 139
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
W Q + PSG R YS + P+ GP +G A D
Sbjct: 140 AWRAGQRTLIWPSG------------------TIARCYSADDPEQLRGPEFDYGWA---D 178
Query: 199 EASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
E + P + +L +P + + T R W D+ ED Q +R
Sbjct: 179 EIAKWRYPSAWDNLMLALRIGKSPQ---CIATTTPRPVRWLADLAAA--EDTVLVQGASR 233
Query: 257 -TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
+ F + R+G DS +AR QE+ + N + R I L+
Sbjct: 234 ENAANLSPAFMAAMHRRFG-DSYLAR---------QELEGIMMSNLPDALWCRNDILRLH 283
Query: 316 APL---------IMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
P+ ++G D A GGD+T ++ + HI+
Sbjct: 284 RPMPKRHRFIRIVIGVDPAMGGGDETGIITAGKDQDGHIW 323
>gi|134287454|ref|YP_001109621.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
gi|134131876|gb|ABO60570.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
Length = 509
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 111/268 (41%), Gaps = 29/268 (10%)
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW---AEVSKWLSML 135
+ ++S+G G GKT+ A + LW + + I A + + + +W A++S +S
Sbjct: 54 RTSVSSGHGTGKTSGFAIIALWHLLCYYLSNTILTAPKISTVSDGVWKEFADLSTKISNG 113
Query: 136 PHR---HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
P +F ++S ++ G+ ++ + ++ P+ G H
Sbjct: 114 PQSWIWEYFVIESERVYVRGY------------KLNWFVIAKSAPRGSPENLAGAHRDW- 160
Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----W 248
+ DEASG PD I G T+ NR + + TR +G+FY+ + W
Sbjct: 161 LLWLADEASGIPDDNFGVITGSLTD-ERNRMCLASQPTRS-SGFFYETHHALSRAEGGPW 218
Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
++ + + F +Y + +I++ G+FP+ + IE + R
Sbjct: 219 NNLVFNSEFSPIVSAKFIAEKKLQY--TEEEYQIKVQGRFPENSSKYLVGPQAIEACVGR 276
Query: 309 EAID-DLYAPLIMGCDIAGEG-GDKTVV 334
I D + ++ D+ G G D+TV+
Sbjct: 277 TVIKPDEHWGWLLPVDVGGGGWRDETVM 304
>gi|226479018|emb|CAX73004.1| Cell division control protein 42 homolog precursor [Schistosoma
japonicum]
Length = 98
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
KP++ P L+ + + H H N+NN NPTI KC + +GKT+L
Sbjct: 2 KPIDGGFSPELPHLKKVRPQNTHGH-NINNENPTIVKCILIGDEQVGKTSL 51
>gi|153806881|ref|ZP_01959549.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
gi|149131558|gb|EDM22764.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
Length = 513
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAP---LIMGCDIAGEGGDK 331
+D+ R+++LG FP+ + IP+ +IE A +E + P +G D+AG G D
Sbjct: 275 NDLFRVKVLGMFPKVSEDVLIPYEWIEIANRNWQELQASGFIPAKSCKLGVDVAGMGRDN 334
Query: 332 TVVVFRRGNII 342
+V+ R GN +
Sbjct: 335 SVLCPRYGNYV 345
>gi|291334534|gb|ADD94186.1| hypothetical protein Syncc9605_0456 [uncultured phage
MedDCM-OCT-S04-C1220]
gi|291335526|gb|ADD95137.1| hypothetical protein Syncc9605_0456 [uncultured phage
MedDCM-OCT-S04-C491]
gi|291335665|gb|ADD95272.1| hypothetical protein Syncc9605_0456 [uncultured phage
MedDCM-OCT-S04-C846]
Length = 354
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 236 WFYDIFNIPLED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
WFYD++ +D W+R+ T ++G + HE +R LD+ R E F +
Sbjct: 96 WFYDLWCYVPDDETNEWQRWSYTT--IDGGNVSKHEVEAARAQLDTRTFRQEFEASF--E 151
Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
+ + ++ +E +S+EA D PL++G D
Sbjct: 152 NLTGLVAISFSDENISQEAKDISIQPLLLGVD 183
>gi|225155389|ref|ZP_03723881.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
gi|224803845|gb|EEG22076.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
Length = 479
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
L G F+D F+ + + ++Q I F E + ++YG DSD+ R ILGQ P+
Sbjct: 183 LFGRFHDAFS--QDRFAQFQAGIADCPHITPEFIEAMRAQYGEDSDIYRSMILGQRPKGN 240
Query: 293 VNNF-IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
F +P E S + + CD A E D+ V+ R GN + + W
Sbjct: 241 ETGFVVPFVDYERCESNPPVWQEGTKQVF-CDFA-ETSDECVIAKRDGNRLSIVDAW 295
>gi|186682890|ref|YP_001866086.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
gi|186465342|gb|ACC81143.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
Length = 543
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 18/131 (13%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
+ A G GK+ + + ++++ + G++I A SE Q+K LWAE+ K
Sbjct: 64 VKAAHGTGKSFIASLLVIYFLFCVGGVAITT-APSEDQVKWILWAELRK----------- 111
Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
+ L G ++++ + IT R YSE ++F G H + + DEA
Sbjct: 112 -IHGLHKTKLGGRCDIMQLLFSETVYAFGITSRDYSE---NSFQGQHRQKQL-LIEDEAD 166
Query: 202 G-TPDIINKSI 211
G TP I N I
Sbjct: 167 GITPQIDNGFI 177
>gi|76156436|gb|AAX27647.2| SJCHGC05167 protein [Schistosoma japonicum]
Length = 206
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
KP++ P L+ + + H H N+NN NPTI KC + +GKT+L
Sbjct: 2 KPIDGGFSPELPHLKKVRPQNTHGH-NINNENPTIVKCILIGDEQVGKTSL 51
>gi|29841054|gb|AAP06067.1| similar to NM_021205 CDC42-like GTPase; novel Ras family protein;
Wrch-1; Ryu GTPase in Homo sapiens [Schistosoma
japonicum]
Length = 187
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
KP++ P L+ + + H H N+NN NPTI KC + +GKT+L
Sbjct: 2 KPIDGGFSPELPHLKKVRPQNTHGH-NINNENPTIVKCILIGDEQVGKTSL 51
>gi|119386463|ref|YP_917518.1| PBSX family phage terminase large subunit [Paracoccus denitrificans
PD1222]
gi|119377058|gb|ABL71822.1| phage terminase, large subunit, PBSX family [Paracoccus
denitrificans PD1222]
Length = 441
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
G + + FI + EAM+R+ + L++G D+A G D++V+ RRG
Sbjct: 214 GDYEAESDMQFIGGGLVREAMARQPFSQIGDELVLGVDVARFGDDRSVIWARRGR 268
>gi|291337121|gb|ADD96636.1| hypothetical protein Syncc9605_0456 [uncultured organism
MedDCM-OCT-S12-C92]
Length = 354
Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 236 WFYDIFNIPLED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
WFYD++ +D W+R+ T ++G + HE +R LD+ R E F +
Sbjct: 96 WFYDLWCYVPDDETNEWQRWSYTT--IDGGNVSKHEVEAARAQLDTRTFRQEFEASF--E 151
Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
+ + ++ ++ +S EA D PL++G D
Sbjct: 152 NLTGLVAISFSDDNISTEAKDISIQPLLLGVD 183
Searching..................................................done
Results from round 2
>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040864|gb|ACT57660.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 521 bits (1341), Expect = e-146, Method: Composition-based stats.
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME
Sbjct: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL
Sbjct: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER
Sbjct: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI
Sbjct: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN
Sbjct: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG
Sbjct: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
Query: 361 CPVGSSI 367
CPVGSSI
Sbjct: 361 CPVGSSI 367
>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040892|gb|ACT57688.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120680|gb|ADV02503.1| putative phage terminase large subunit [Liberibacter phage SC1]
gi|317120824|gb|ADV02645.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 511
Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats.
Identities = 252/359 (70%), Positives = 299/359 (83%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
M R + T+ + EQ+L +++ E LSF NFV+ FFPWG KG PLE FS P WQLEFME
Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L S+GIDSKHY+ CRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
PDTFVG HNT+GMA+ NDEASGTPD+IN ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
FN PL+DWKR+QIDTRTVEGID FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP N
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
IEEA++RE D YAPLIMGCDIA EGGD TVVV RRG +IEH+FDWS ++ TN +
Sbjct: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
>gi|317120722|gb|ADV02544.1| putative phage terminase large subunit [Liberibacter phage SC2]
gi|317120783|gb|ADV02604.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 516
Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats.
Identities = 257/359 (71%), Positives = 302/359 (84%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
M R + T+ + EQ+L +++ E LSF NFV+ FFPWG KG PLE FS P WQLEFME
Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L S+GIDSKHY+ CRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
PDTFVG HNT+GMA+ NDEASGTPD+IN ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
FN PL+DWKR+QIDTRTVEGID FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPQQ 300
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
YI EA+ R AI D YAPLIMGCDIAGEG DKTVVV RRGNIIE IFDWS +LI+ TN++
Sbjct: 301 YIVEALERVAIPDPYAPLIMGCDIAGEGEDKTVVVLRRGNIIERIFDWSGELIEVTNRK 359
>gi|315122902|ref|YP_004063391.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496304|gb|ADR52903.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 509
Score = 480 bits (1234), Expect = e-133, Method: Composition-based stats.
Identities = 262/359 (72%), Positives = 303/359 (84%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
M R + T + EQEL E++ + LSF NFV+R FPW L +FS+P RWQL+FME
Sbjct: 1 MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
AVD C NV+N +P IFK A+SAGRGIGKTTLNAWMMLWLISTRPGMSI+C+ANSETQL
Sbjct: 61 AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
K+TLWAEVSKWLSMLP++HWFEMQSLSLHP+ WYAE LE++ GIDSKHYTITCRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
PDTFVG HNT+GMA+FNDEASGTPD+IN SILGFFTE N NRFW+MTSN RRLNGWFYDI
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLNGWFYDI 240
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
FN+PLEDW+R+QIDTRTVEGID FHE II+RYGLDSDV R+E+LGQFPQQ++N+FIP
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPNFHENIIARYGLDSDVTRVEVLGQFPQQDINSFIPFY 300
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
IEEA++RE I D YAPL+MGCDIAGEGGD TVVV RRG IEHIFDWS + ++++
Sbjct: 301 RIEEALNREPIKDPYAPLVMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNVSSRK 359
>gi|315121940|ref|YP_004062429.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495342|gb|ADR51941.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 509
Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats.
Identities = 264/359 (73%), Positives = 303/359 (84%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
M R + T + EQEL E++ + LSF NFV+R FPW L +FS+P RWQL+FME
Sbjct: 1 MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
AVD C NV+N +P IFK A+SAGRGIGKTTLNAWMMLWLISTRPGMSI+C+ANSETQL
Sbjct: 61 AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
K+TLWAEVSKWLSMLP++HWFEMQSLSLHP+ WYAE LE++ GIDSKHYTITCRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
PDTFVG HNT+GMA+FNDEASGTPD+IN SILGFFTE N NRFW+MTSN RRL GWFYDI
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLKGWFYDI 240
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
FN+PLEDW+R+QIDTRTVEGID FHEGIISRYGLDSDV R+E+LGQFPQQ++N+FIP
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPSFHEGIISRYGLDSDVTRVEVLGQFPQQDINSFIPFY 300
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
IEEA++RE I D YAPLIMGCDIAGEGGD TVVV RRG IEHIFDWS + ++++
Sbjct: 301 RIEEALNREPIKDPYAPLIMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNASSRK 359
>gi|212710820|ref|ZP_03318948.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
30120]
gi|212686517|gb|EEB46045.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
30120]
Length = 493
Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats.
Identities = 98/355 (27%), Positives = 157/355 (44%), Gaps = 20/355 (5%)
Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
+I T EQ ++++ M LS + + FPWG G LE+ S P +WQ E + +
Sbjct: 1 MIETMSPEEQLINDIGMFTHDPLS---YALYAFPWGEAGTELENASGPRQWQAEALNEIG 57
Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
H + P + A ++G GIGK+ + ++ W + T ++ AN+E QL+
Sbjct: 58 EHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTK 115
Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
W E++KW + + WF +++ + + + +SE +
Sbjct: 116 TWPEIAKWQRLSITKDWFTCTKTAIYSNDP----------NHANAWRADAVPWSENNTEA 165
Query: 184 FVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
F G HN + + DEAS D++ + G T+ N WI N R G F + F
Sbjct: 166 FAGLHNQGKRIILVFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFR 225
Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
WK QID+RTVEG + E I YG+D D ++ + G FP FIP
Sbjct: 226 KFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLT 285
Query: 303 EEAMSREAIDDL--YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
+ AM R +AP+I+G D A G D V+ R+G + + W+ +
Sbjct: 286 DAAMKRTVTQAEVSHAPIILGVDPAYSGDDDAVIYLRQGLHSKCL--WTGSKTID 338
>gi|268589373|ref|ZP_06123594.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
gi|291315400|gb|EFE55853.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
Length = 493
Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats.
Identities = 97/355 (27%), Positives = 157/355 (44%), Gaps = 20/355 (5%)
Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
+I T EQ ++++ M LS + + FPWG G LE+ + P +WQ E + +
Sbjct: 1 MIDTMSPEEQLINDIGMFTHDPLS---YALYAFPWGEAGTELENANGPRQWQAEALNEIG 57
Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
H + P + A ++G GIGK+ + ++ W + T ++ AN+E QL+
Sbjct: 58 EHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTK 115
Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
W E++KW + + WF +++ + + + +SE +
Sbjct: 116 TWPEIAKWQRLSITKDWFTYTKTAIYSNDP----------NHANAWRADAVPWSENNTEA 165
Query: 184 FVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
F G HN + + DEAS D++ + G T+ N WI N R G F + F
Sbjct: 166 FAGLHNQGKRIILIFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFR 225
Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
WK QID+RTVEG + E I YG+D D ++ + G FP FIP
Sbjct: 226 KFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLT 285
Query: 303 EEAMSREAIDDL--YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
+ AM R +AP+I+G D A G D V+ R+G + + W+ +
Sbjct: 286 DAAMKRTVTQAEVSHAPIIIGVDPAYSGDDDAVIYLRQGLHSKCL--WTGSKTID 338
>gi|215487825|ref|YP_002330256.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|215265897|emb|CAS10306.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
Length = 493
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 88/346 (25%), Positives = 152/346 (43%), Gaps = 18/346 (5%)
Query: 6 STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65
EQ + ++ L + + FPWG G L H + P +WQ + + H
Sbjct: 4 EAMSPEEQLVEDIASFTYDPL---GYALYAFPWGEDGTELAHATGPRKWQADAFREIRDH 60
Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
+ P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W
Sbjct: 61 LQNPATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTW 118
Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
E+ KW ++ + WF + +++ + + K + +SE + F
Sbjct: 119 PEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFA 168
Query: 186 GPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
G HN + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 169 GLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKY 228
Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
WK QID+RTVEG + + + YG DSD ++ + G FP N FIP +
Sbjct: 229 KHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQP 288
Query: 305 AMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
A+ R +A +++G D + +G D V+ R+G + + +W
Sbjct: 289 AVGRVITPAQVQHAAVVLGVDPSHQGKDPAVIYLRQGLHCKKLGEW 334
>gi|330007152|ref|ZP_08305894.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
gi|328535499|gb|EGF61959.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
Length = 495
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 99/356 (27%), Positives = 161/356 (45%), Gaps = 25/356 (7%)
Query: 7 TDQKL--EQELHEMLMHAECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
TD L E++L E L+ + + SF + + + FPWG G L H S P +WQ +
Sbjct: 2 TDAALSPEEQLKEQLI--DDIASFTHDPLGYALYAFPWGEDGTELAHASGPRQWQADAFR 59
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
+ H + P + + ++G GIGK+ + ++ W +ST ++ AN++ QL
Sbjct: 60 EIGEHLQNPATRHQPLMI--SRASGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQL 117
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
+ W E+ KW ++ + WF + +++ + + K + +SE
Sbjct: 118 RTKTWPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHN 167
Query: 181 PDTFVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
+ F G HN + V DEAS D++ + G T+ + W+ N R G F +
Sbjct: 168 TEAFAGLHNERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRE 227
Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
F WK QID+RTVEG + + + YG DSD ++ + G FP FIP
Sbjct: 228 CFRKYKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPT 287
Query: 300 NYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
+EAM R A +AP I+G D A G D V+ R+G + + W+
Sbjct: 288 GLTDEAMKRVVTAAQVAHAPRIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 341
>gi|309702815|emb|CBJ02146.1| putative terminase, large subunit [Escherichia coli ETEC H10407]
Length = 493
Score = 389 bits (998), Expect = e-106, Method: Composition-based stats.
Identities = 88/344 (25%), Positives = 153/344 (44%), Gaps = 18/344 (5%)
Query: 8 DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
EQ + ++ L + + FPWG +G L H + P +WQ + + H
Sbjct: 6 MSPEEQLVEDIAGFTYDPL---GYALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQ 62
Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
+ P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E
Sbjct: 63 NPATRHQPIML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
+ KW ++ + WF + +++ + + K + +SE + F G
Sbjct: 121 IIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
HN + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
WK QID+RTVEG + + + YG DSD ++ + G FP N FIP + A+
Sbjct: 231 RWKCAQIDSRTVEGTNKEQLQKWVDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPAV 290
Query: 307 SR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
R +A +++G D + +G D V+ R+G + + +W
Sbjct: 291 GRVITPAQVQHAAVVLGVDPSHQGKDPAVIYLRQGLHCKKLGEW 334
>gi|262043569|ref|ZP_06016682.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039103|gb|EEW40261.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 491
Score = 389 bits (998), Expect = e-106, Method: Composition-based stats.
Identities = 93/348 (26%), Positives = 153/348 (43%), Gaps = 20/348 (5%)
Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
EQ + ++ L + + FPWG G L H + P +WQ + + H +
Sbjct: 7 SPEEQLIDDIASFTHDPL---GYALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQN 63
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E+
Sbjct: 64 PATRHQPLML--ARASGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQLRTKTWPEI 121
Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
KW ++ + WF + +++ + + K + +SE + F G H
Sbjct: 122 IKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171
Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
N + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 172 NERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
WK QID+RTVEG + + + YG DSD ++ + G FP FIP +EAM
Sbjct: 232 WKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPTGLTDEAMK 291
Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
R A+ +AP I+G D A G D V+ R+G + + W+
Sbjct: 292 RVVTAVQVAHAPRIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|323156136|gb|EFZ42295.1| terminase large subunit [Escherichia coli EPECa14]
Length = 491
Score = 389 bits (998), Expect = e-106, Method: Composition-based stats.
Identities = 95/348 (27%), Positives = 155/348 (44%), Gaps = 20/348 (5%)
Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
EQ + ++ L + + FPWG +G L H + P +WQ + + H +
Sbjct: 7 SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
P + A+++G GIGK+ + ++ W +ST ++ AN++ QL+ W E+
Sbjct: 64 PATRYQPLML--ALASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121
Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
KW ++ + WF + +++ + + K + +SE + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDLGHD----------KRWRADAIPWSEHNTEAFAGLH 171
Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
N + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
WK QID+RTVEG + + + YG DSD +I + G FP FIP +EAM
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291
Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
R A YAP+I+G D A G D V+ R+G + + W+
Sbjct: 292 RVVTAAQVAYAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|332344357|gb|AEE57691.1| terminase, large subunit [Escherichia coli UMNK88]
Length = 491
Score = 388 bits (997), Expect = e-106, Method: Composition-based stats.
Identities = 94/349 (26%), Positives = 154/349 (44%), Gaps = 20/349 (5%)
Query: 8 DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
EQ + ++ L + + FPWG +G L H + P +WQ + + H
Sbjct: 6 MSPEEQLVEDIASFTYDPL---GYALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQ 62
Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
+ P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E
Sbjct: 63 NPATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
+ KW ++ + WF + +++ + + K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
HN + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
WK QID+RTVEG + + + YG DSD +I + G FP FIP +EAM
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 SR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
R A +AP+I+G D A G D V+ R+G + + W+
Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|327252187|gb|EGE63859.1| terminase large subunit [Escherichia coli STEC_7v]
Length = 491
Score = 388 bits (996), Expect = e-106, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)
Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
EQ + ++ L + + FPWG +G L H + P +WQ + + H +
Sbjct: 7 SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E+
Sbjct: 64 PATRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121
Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
KW ++ + WF + +++ + + K + +SE + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171
Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
N + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
WK QID+RTVEG + + + YG DSD +I + G FP FIP +EAM
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291
Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
R A +AP+I+G D A G D V+ R+G + + W+
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|301046412|ref|ZP_07193572.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|300301638|gb|EFJ58023.1| conserved hypothetical protein [Escherichia coli MS 185-1]
Length = 491
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 94/352 (26%), Positives = 155/352 (44%), Gaps = 20/352 (5%)
Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
++ EQ + ++ L + + FPWG G L H + P +WQ + +
Sbjct: 3 VAAMSPEEQLVEDIASFTYDPL---GYALYAFPWGEDGTELAHATGPRQWQADAFREIRD 59
Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+
Sbjct: 60 HLQNPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117
Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
W E+ KW ++ + WF + +++ + + K + +SE + F
Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167
Query: 185 VGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
G HN + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227
Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
WK QID+RTVEG + + + YG DSD +I + G FP FIP +
Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287
Query: 304 EAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
EAM R A +AP+I+G D A G D V+ R+G + + W+
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|331648179|ref|ZP_08349269.1| conserved hypothetical protein [Escherichia coli M605]
gi|331043039|gb|EGI15179.1| conserved hypothetical protein [Escherichia coli M605]
Length = 491
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)
Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
EQ + ++ L + + FPWG +G L H + P +WQ + + H +
Sbjct: 7 SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E+
Sbjct: 64 PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121
Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
KW ++ + WF + +++ + + K + +SE + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171
Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
N + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
WK QID+RTVEG + + + YG DSD +I + G FP FIP +EAM
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291
Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
R A +AP+I+G D A G D V+ R+G + + W+
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|300898423|ref|ZP_07116764.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|300357890|gb|EFJ73760.1| conserved hypothetical protein [Escherichia coli MS 198-1]
Length = 491
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)
Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
EQ + ++ L + + FPWG +G L H + P +WQ + + H +
Sbjct: 7 SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQN 63
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E+
Sbjct: 64 PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121
Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
KW ++ + WF + +++ + + K + +SE + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171
Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
N + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
WK QID+RTVEG + + + YG DSD +I + G FP FIP +EAM
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291
Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
R A +AP+I+G D A G D V+ R+G + + W+
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|298381721|ref|ZP_06991320.1| terminase large subunit protein [Escherichia coli FVEC1302]
gi|301019339|ref|ZP_07183525.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|298279163|gb|EFI20677.1| terminase large subunit protein [Escherichia coli FVEC1302]
gi|299882256|gb|EFI90467.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|323948690|gb|EGB44595.1| hypothetical protein ERKG_04913 [Escherichia coli H252]
Length = 491
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)
Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
EQ + ++ L + + FPWG +G L H + P +WQ + + H +
Sbjct: 7 SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E+
Sbjct: 64 PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121
Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
KW ++ + WF + +++ + + K + +SE + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171
Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
N + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
WK QID+RTVEG + + + YG DSD +I + G FP FIP +EAM
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291
Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
R A +AP+I+G D A G D V+ R+G + + W+
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|294491573|gb|ADE90329.1| putative phage terminase, large subunit [Escherichia coli IHE3034]
Length = 491
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)
Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
EQ + ++ L + + FPWG +G L H + P +WQ + + H +
Sbjct: 7 SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E+
Sbjct: 64 PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121
Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
KW ++ + WF + +++ + + K + +SE + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171
Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
N + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
WK QID+RTVEG + + + YG DSD +I + G FP FIP +EAM
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291
Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
R A +AP+I+G D A G D V+ R+G + + W+
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|324008564|gb|EGB77783.1| hypothetical protein HMPREF9532_01752 [Escherichia coli MS 57-2]
Length = 491
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)
Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
EQ + ++ L + + FPWG +G L H + P +WQ + + H +
Sbjct: 7 SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E+
Sbjct: 64 PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121
Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
KW ++ + WF + +++ + + K + +SE + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDLGHD----------KRWRADAIPWSEHNTEAFAGLH 171
Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
N + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
WK QID+RTVEG + + + YG DSD +I + G FP FIP +EAM
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291
Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
R A +AP+I+G D A G D V+ R+G + + W+
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|30387381|ref|NP_848210.1| terminase large subunit [Enterobacteria phage epsilon15]
gi|30266036|gb|AAO06065.1| terminase large subunit [Salmonella phage epsilon15]
Length = 491
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 94/352 (26%), Positives = 158/352 (44%), Gaps = 23/352 (6%)
Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
IST+++L +++ A + + FPWG G L H + P +WQ + +
Sbjct: 6 ISTEEQLVEDI------ASFTYDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIRD 59
Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+
Sbjct: 60 HLQNPATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117
Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
W E+ KW ++ + WF + +++ + + K + +SE + F
Sbjct: 118 WPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167
Query: 185 VGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
G HN + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227
Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
WK QID+RTVEG + + + YG +SD ++ + G FP FIP +
Sbjct: 228 YKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEESDFVKVRVRGIFPDASELQFIPTGLTD 287
Query: 304 EAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
EAM R A +AP+I+G D A G D V+ R+G + + W+
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|218700994|ref|YP_002408623.1| putative phage terminase, large subunit [Escherichia coli IAI39]
gi|218370980|emb|CAR18807.1| putative phage terminase, large subunit [Escherichia coli IAI39]
Length = 491
Score = 387 bits (993), Expect = e-105, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 20/348 (5%)
Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
EQ + ++ L + + FPWG +G L H + P +WQ + + H +
Sbjct: 7 SPEEQLIDDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E+
Sbjct: 64 PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121
Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
KW ++ + WF + +++ + + K + +SE + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171
Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
N + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
WK QID+RTVEG + + + YG DSD +I + G FP FIP +EAM
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291
Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
R A +AP+I+G D A G D V+ R+G + + W+
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|117624715|ref|YP_853628.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
gi|115513839|gb|ABJ01914.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
Length = 491
Score = 386 bits (992), Expect = e-105, Method: Composition-based stats.
Identities = 93/348 (26%), Positives = 154/348 (44%), Gaps = 20/348 (5%)
Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
EQ + ++ L + + FPWG +G L H + P +WQ + + H +
Sbjct: 7 SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E+
Sbjct: 64 PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121
Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
KW ++ + WF + +++ + + K + +SE + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171
Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
N + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
WK QID+RTVEG + + + YG DSD +I + G FP FIP +EAM
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291
Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
R A ++P+I+G D A G D V+ R+G + + W+
Sbjct: 292 RVVTAAQVAHSPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|89152423|ref|YP_512256.1| putative terminase large subunit [Escherichia phage phiV10]
gi|74055446|gb|AAZ95895.1| putative terminase large subunit [Escherichia phage phiV10]
Length = 491
Score = 386 bits (990), Expect = e-105, Method: Composition-based stats.
Identities = 93/348 (26%), Positives = 153/348 (43%), Gaps = 20/348 (5%)
Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
EQ + ++ L + + FPWG +G L H + P +WQ + + H +
Sbjct: 7 SPEEQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQN 63
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E+
Sbjct: 64 PETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEI 121
Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
KW ++ + WF + +++ + + K + +SE + F G H
Sbjct: 122 IKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLH 171
Query: 189 NTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
N + V DEAS D++ + G T+ + W+ N R G F + F
Sbjct: 172 NERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHR 231
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
WK QID+RTVEG + + + YG SD +I + G FP FIP +EAM
Sbjct: 232 WKTAQIDSRTVEGTNKQQLQKWVDDYGEGSDFVKIRVRGIFPDASELQFIPTGLTDEAMK 291
Query: 308 R--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
R A +AP+I+G D A G D V+ R+G + + W+
Sbjct: 292 RVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 337
>gi|320175050|gb|EFW50163.1| terminase B protein, putative [Shigella dysenteriae CDC 74-1112]
Length = 480
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 93/338 (27%), Positives = 152/338 (44%), Gaps = 21/338 (6%)
Query: 23 ECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
E + F + + + FPWG +G L H + P +WQ + + H + P +
Sbjct: 3 EDIAGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML 62
Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ +
Sbjct: 63 --ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITK 120
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFN 197
WF + +++ + + K + +SE + F G HN + V
Sbjct: 121 DWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLHNERKRIIVVF 170
Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
DEAS D++ + G T+ + W+ N R G F + F WK QID+RT
Sbjct: 171 DEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRT 230
Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLY 315
VEG + + + YG DSD +I + G FP FIP +EAM R A +
Sbjct: 231 VEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAH 290
Query: 316 APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
AP+I+G D A G D V+ R+G + + W+
Sbjct: 291 APVIIGVDPAYSGVDDAVIYLRQGLHSKVL--WTGNKT 326
>gi|227355862|ref|ZP_03840255.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
gi|227164181|gb|EEI49078.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
Length = 494
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 94/352 (26%), Positives = 154/352 (43%), Gaps = 23/352 (6%)
Query: 9 QKLEQELHEMLMHAECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
+ L++ E L+ E + SF + + FPWG G LE ++ P +WQ E + +
Sbjct: 3 EALQKSPEEQLI--EDIASFTHDPLGYAYYAFPWGEAGGELEEYNGPRQWQAEALNEIGE 60
Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
H + P + A ++G GIGK+ + ++ W + T ++ AN+E QL+
Sbjct: 61 HLRNPKTRHQPLLL--ARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTKT 118
Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
W E++KW + +WF +++ + + + +SE + F
Sbjct: 119 WPEIAKWQRLSLTNNWFTCTKTAIYSNDP----------NHANAWRADAVPWSENNTEAF 168
Query: 185 VGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
G HN + + DEAS D++ + G T+ WI N R G F + F
Sbjct: 169 AGLHNKGKRIILVFDEASNIADLVWEVAEGALTDEGTEIIWIAFGNPTRNTGRFRECFRK 228
Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
W QID+RTVEG + + YG DSD ++ + G FP FIP +
Sbjct: 229 FKHRWNTKQIDSRTVEGSNKEQIKNWEEDYGEDSDFFKVRVRGVFPSASELQFIPTGLTD 288
Query: 304 EAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
EAM R + +AP+I+G D A G D V+ R+G + + W+
Sbjct: 289 EAMKRIVTQAEVAHAPVIIGVDPAYSGIDDAVIYLRQGLFSKCL--WTGFKT 338
>gi|304398406|ref|ZP_07380280.1| terminase, large subunit [Pantoea sp. aB]
gi|304354272|gb|EFM18645.1| terminase, large subunit [Pantoea sp. aB]
Length = 490
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 87/348 (25%), Positives = 153/348 (43%), Gaps = 19/348 (5%)
Query: 5 ISTDQKLE-QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
+S+ LE Q + ++ + + FPWG +G L + P +WQ + + +
Sbjct: 1 MSSAADLEIQLIEDIGAFTHDPF---GYALYAFPWGEEGTDLAYSKGPRQWQEDAFKQIG 57
Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
H + P + A +G GIGK+ + ++ W + T ++ AN+E QL+
Sbjct: 58 AHLQNPDTRHQPLMIGRA--SGHGIGKSAFISMLVKWGMDTCEDCKVVVTANTENQLRTK 115
Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
W E++KW + + WF + +++ + +K + +SE +
Sbjct: 116 TWPEIAKWQRLSITQDWFTCTATAIYSNDP----------SHAKSWRADAIPWSENNTEA 165
Query: 184 FVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
F G HN + + DEAS D++ + G T+ N W+ N R G F + F
Sbjct: 166 FAGLHNERKRIILIFDEASNIADLVWEVAEGALTDENTEIIWVAFGNPTRNTGRFRECFR 225
Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
WK QID+R+VEG + + + YG DSD ++ + G FP FIP
Sbjct: 226 KLRHRWKTAQIDSRSVEGTNKEQIQKWVDDYGEDSDFVKVRVRGLFPSASEAQFIPTGLT 285
Query: 303 EEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
+ A+ R +A ++G D A +GGD V+ R+G + + ++
Sbjct: 286 DAAVGRVITPGQVAHAATVIGVDPAHQGGDPAVIYLRQGLHTKKLGEY 333
>gi|228911519|ref|ZP_04075310.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
200]
gi|228848128|gb|EEM92991.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
200]
Length = 459
Score = 368 bits (945), Expect = e-100, Method: Composition-based stats.
Identities = 81/310 (26%), Positives = 141/310 (45%), Gaps = 18/310 (5%)
Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
++ P + + + V K ++ +G+G+GKT L + +++W + RP
Sbjct: 7 YWDDPVAFAEDMLGFYPDEWQRKVLMDLAQSPKVSVRSGQGVGKTGLESVVVIWFLCCRP 66
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+IC A ++ QL LWAE++KWL ++ + ++ G
Sbjct: 67 NPKVICTAPTKEQLFTVLWAEIAKWLEGSAVKNLLKWTKTRVYMIG------------SE 114
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
+ + T RT + +P+ G H + M DEASG D I ++ILG + +
Sbjct: 115 ERWFATARTAT--KPENMQGFHEDY-MLFVCDEASGIADPIMEAILGTLS--GAENKLFL 169
Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
N R +G FYD N + +K +++ + E + +YG SDV R+ +LG
Sbjct: 170 CGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLG 229
Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
+FP+ E + FIP +E+A S + L +G D+A G D+TV+ R GN + +
Sbjct: 230 EFPKAEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVFKLL 288
Query: 347 DWSAKLIQET 356
+ + ET
Sbjct: 289 NHYKQDTMET 298
>gi|228968731|ref|ZP_04129698.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228790961|gb|EEM38595.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 459
Score = 368 bits (945), Expect = e-100, Method: Composition-based stats.
Identities = 81/310 (26%), Positives = 141/310 (45%), Gaps = 18/310 (5%)
Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
++ P + + + V K ++ +G+G+GKT L + +++W + RP
Sbjct: 7 YWDDPVAFAEDMLGFYPDEWQRKVLMDLAQSPKVSVRSGQGVGKTGLESVVVIWFLCCRP 66
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+IC A ++ QL LWAE++KWL ++ + ++ G
Sbjct: 67 NPKVICTAPTKEQLFTVLWAEIAKWLEGSAVKNLLKWTKTRVYMIG------------SE 114
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
+ + T RT + +P+ G H + M DEASG D I ++ILG + +
Sbjct: 115 ERWFATARTAT--KPENMQGFHEDY-MLFVCDEASGIADPIMEAILGTLS--GAENKLFL 169
Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
N R +G FYD N + +K +++ + E + +YG SDV R+ +LG
Sbjct: 170 CGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLG 229
Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
+FP+ E + FIP +E+A S + L +G D+A G D+TV+ R GN + +
Sbjct: 230 EFPKAEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVFKLL 288
Query: 347 DWSAKLIQET 356
+ + ET
Sbjct: 289 NHYKQDTMET 298
>gi|302120432|gb|ADK92426.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 255
Score = 366 bits (939), Expect = 3e-99, Method: Composition-based stats.
Identities = 194/255 (76%), Positives = 224/255 (87%)
Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
IGKTTLNAW++LWL+S RPGMSIIC+ANSETQLK TLWAEVSKWLS+LP++HWFEMQSLS
Sbjct: 1 IGKTTLNAWLVLWLMSIRPGMSIICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 60
Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
LHP+ WY+++L S+GIDSKHY+ CRTYSEERPDTFVG HNT+GMA+ NDEASGTPD+I
Sbjct: 61 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 120
Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
N ILGF TE N NRFWIMTSN RRL+G FY+IFN PL+DWKR+QIDTRTVEGID FHE
Sbjct: 121 NLGILGFLTEQNANRFWIMTSNPRRLSGKFYEIFNRPLDDWKRFQIDTRTVEGIDPSFHE 180
Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
GII+RYGLDSDV R+E+ GQFPQQ++++FIP N IEEA++RE D YAPLIMGCDIA E
Sbjct: 181 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 240
Query: 328 GGDKTVVVFRRGNII 342
GGD TVVV RRG +I
Sbjct: 241 GGDNTVVVLRRGPVI 255
>gi|282848875|ref|ZP_06258265.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
gi|282581380|gb|EFB86773.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
Length = 483
Score = 362 bits (929), Expect = 4e-98, Method: Composition-based stats.
Identities = 97/344 (28%), Positives = 156/344 (45%), Gaps = 17/344 (4%)
Query: 14 ELHEMLMHAECVLSFK--NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVN 71
E H+ L+ A L+ FV +PWG G PLE+ P WQ++ ++ +
Sbjct: 2 EKHDELIEALGALTHDPLAFVYFAYPWGEPGTPLENMEGPDEWQIQILKDIGEQLK--KG 59
Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
T + A+++G GIGK+ L +W++ + IST + AN+E QL+ W E+SKW
Sbjct: 60 KDLQTAIQEAVASGHGIGKSALISWLIHFAISTHENTRGVVTANTEGQLRTKTWPELSKW 119
Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT- 190
+M + F + ++ S E K + I +S+ P++F G HN
Sbjct: 120 HNMFIAKDLFTYTATAIFSSDKDYE----------KTWRIDAIPWSKNSPESFAGLHNQG 169
Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
+ + V DEAS D+I + G T+ N W N R +G F + F + W
Sbjct: 170 NRILVLFDEASAIDDVIWEVTEGALTDANTEIIWCAFGNPTRNSGRFRECFRKYRKFWNT 229
Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
YQID+RTV+ + E + YG DSD ++ + G FP FI ++A +
Sbjct: 230 YQIDSRTVKISNKTKIEEWLEAYGEDSDFFKVRVRGVFPSASDLQFISTEIADKAQKQVY 289
Query: 311 IDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+ P+I+G D A G D +V R+G ++ +
Sbjct: 290 KPGQFEHLPVIIGVDPAWTGSDSLEIVMRQGYYMKSLASIPKND 333
>gi|150390341|ref|YP_001320390.1| hypothetical protein Amet_2579 [Alkaliphilus metalliredigens QYMF]
gi|149950203|gb|ABR48731.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
Length = 469
Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats.
Identities = 87/313 (27%), Positives = 138/313 (44%), Gaps = 18/313 (5%)
Query: 45 LEHFSQPHRWQLE-FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
L+++ W E + + V K ++ +G+G+GKT L + + W +
Sbjct: 9 LDNYWDNPVWFAEDMLGFYPDPWQAKVLMDLAQHPKVSVRSGQGVGKTGLESIAITWYLC 68
Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
TRP +I A + QL + LWAE+SKWLS ++ +G+
Sbjct: 69 TRPFPKVIATAPTRQQLYDVLWAEISKWLSKSKVDKLLRWTKTKIYMNGF---------- 118
Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
+ + T RT RP+ G H + M DEASG D I ++ILG T
Sbjct: 119 --EERWWATARTAV--RPENMQGFHEDY-MLFVVDEASGVADPIMEAILGTLTGY--ENK 171
Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
++ N + +G FYD N + +K +++ + E + +YG DSDV R+
Sbjct: 172 LLLCGNPTKTSGTFYDSHNRDRDTYKSHKVSSMDSPRTSKENIEMLKKKYGADSDVFRVR 231
Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIE 343
+LG FP+ E ++ I E+A L +G DIA G DKT++ R GN +
Sbjct: 232 VLGDFPKGEADSLISLEVTEQAAETVVDISNAYTLNIGADIARFGDDKTIIAPRIGNRVL 291
Query: 344 HIFDWSAKLIQET 356
+ +S K ET
Sbjct: 292 DLQQYSKKDTMET 304
>gi|167032754|ref|YP_001667985.1| putative phage terminase large subunit [Pseudomonas putida GB-1]
gi|166859242|gb|ABY97649.1| putative phage terminase, large subunit [Pseudomonas putida GB-1]
Length = 499
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 98/337 (29%), Positives = 161/337 (47%), Gaps = 16/337 (4%)
Query: 8 DQKLEQELHEMLMHAECVLSFKN----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
+E+ A + SF + +V+ FPWG G L + + P +WQ E +E++
Sbjct: 1 MNASNREIDYEQELANDIASFSDDPLGYVLYAFPWGEAGGELANKTGPRKWQREVLESIG 60
Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
+ + + + A+++G GIGK+ L +W++ W + T + AN+E+QL+
Sbjct: 61 EQLRAGAKDRGE-VIREAVASGHGIGKSALVSWVIKWALDTEVDTRGVVTANTESQLRTK 119
Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
W EV+KW + HWF++ +L + E K++ I +S+ +
Sbjct: 120 TWPEVAKWNRLSITAHWFKLTGTALISTDPDHE----------KNWRIDAVPWSDTNTEA 169
Query: 184 FVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
F G HN + + DEAS D++ + G T+ + W N R +G F + F
Sbjct: 170 FAGLHNEGKRILLIFDEASAIADLVWEVAEGALTDADTEIIWAAFGNPTRNSGRFRECFT 229
Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
W+ Q+D+RTV+G + I+ YG DSD RI + G FP+ IP +++
Sbjct: 230 KFKHRWRHRQVDSRTVDGTNKTQIAKWIADYGEDSDFVRIRVRGMFPRASDLQLIPTDWV 289
Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
EAM R+ + L L+ G DIA G D V+ FRRG
Sbjct: 290 AEAMRRDGVYGLDDALVCGIDIARGGMDNNVIRFRRG 326
>gi|282598712|ref|YP_003358792.1| putative phage terminase B protein [Enterococcus phage phiEf11]
gi|300860603|ref|ZP_07106690.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
gi|307292389|ref|ZP_07572245.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
TX0411]
gi|258598082|gb|ACV83339.1| putative phage terminase B protein [Enterococcus phage phiEf11]
gi|300849642|gb|EFK77392.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
gi|306496518|gb|EFM66079.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
TX0411]
gi|315146097|gb|EFT90113.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
Length = 484
Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats.
Identities = 85/327 (25%), Positives = 151/327 (46%), Gaps = 21/327 (6%)
Query: 35 FFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
F P+ G ++++ +P + + + V + K ++ +G+G+GKT L
Sbjct: 5 FIPFADIGAAIDYYYDKPVAFCQDILHLDPDEWQDKVLDDLAKFPKVSVRSGQGVGKTAL 64
Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
A +LW ++ RP +I A + QL + LWAEV+KWL+ + + ++ G
Sbjct: 65 EAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNNSLIKDLLKWTKTKIYMVG- 123
Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
DS+ + T RT + +P+ G H H M + DEASG D I ++ILG
Sbjct: 124 -----------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVADPIMEAILG 169
Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
+ + +M N + G FYD N + ++ +++ + + + + +I +Y
Sbjct: 170 TLSGFD--NKLLMCGNPNNIEGVFYDSHNTDRDKYRTHKVSSYDSKRTNKENIQMLIDKY 227
Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL---IMGCDIAGEGGD 330
G +SDVAR+ I G+FP+ +++FI +E A D + +G D+A G D
Sbjct: 228 GENSDVARVRIYGEFPKGALDSFISLEIVEFAKDINISDSELKHVREGHIGVDVARFGDD 287
Query: 331 KTVVVFRRGNIIEHIFDWSAKLIQETN 357
T+V R G +S + +T
Sbjct: 288 STIVFPRIGAKALPFEKYSKQDTMQTT 314
>gi|303328395|ref|ZP_07358832.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
gi|302861389|gb|EFL84326.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
Length = 500
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 93/332 (28%), Positives = 148/332 (44%), Gaps = 16/332 (4%)
Query: 25 VLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84
FV+ FPWG G ++ P WQ E + + + + + ++ + A+S+
Sbjct: 26 AADPLGFVLFAFPWG-GGALADYPDGPDVWQREILRGMGEQLSTGASAA--SVIREAVSS 82
Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
G G+GK+ L AW++LW +ST + AN+E QLK WAE++KW + +WF+
Sbjct: 83 GHGVGKSALVAWIILWAMSTFSDTRGVVTANTENQLKGKTWAELAKWHRLCLCGYWFDCT 142
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGT 203
+ +L + E K + + +SE + F G HN + + DEAS
Sbjct: 143 ATALISTQAGHE----------KTWRVDMVAWSERNTEAFAGLHNKGRRVLLIFDEASAI 192
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
PD I + G T+ + W N R G F + F W ++D+RT D
Sbjct: 193 PDAIWEVSEGALTDADTEIIWCCFGNPTRNTGRFRECFGRYAHRWNTRRVDSRTAAMTDK 252
Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMG 321
+ YG DSD R+ + G+FP+ FI + + EA R D Y AP I+G
Sbjct: 253 NQLAQWVEDYGEDSDFVRVRVRGEFPRAGDRQFISSDIVHEARGRSLKPDQYSFAPRILG 312
Query: 322 CDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
D+A G D++V+ R+G +
Sbjct: 313 VDVARSGSDQSVITRRQGLACLEQRKFRGLDT 344
>gi|209901239|ref|YP_002290878.1| putative terminase B [Clostridium phage phiCD27]
gi|199612120|gb|ACH91293.1| putative terminase B [Clostridium phage phiCD27]
Length = 469
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 82/310 (26%), Positives = 139/310 (44%), Gaps = 17/310 (5%)
Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
++ P + + + S+V + K +I +G+G+GKT L + +W +STRP
Sbjct: 12 YWDNPVWFAEDMLNFKADKWQSDVLMALAQTPKVSIRSGQGVGKTGLESIATVWYLSTRP 71
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
++ A + QL + LWAE++KWLS E ++ G+
Sbjct: 72 FPKVVATAPTRQQLYDVLWAEIAKWLSNSKVEKLLEWTKTKVYMKGF------------E 119
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
+ + T RT +P+ G H + M DEASG D I ++ILG + ++
Sbjct: 120 ERWWATARTAV--KPENMQGFHEDY-MLFVVDEASGVADPIMEAILGTLS--GAENKLLL 174
Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
N R +G FYD N + +K +++ + E + +Y SD R+ +LG
Sbjct: 175 CGNPTRTSGTFYDSHNRDRDLYKTFKVSSLDSPRTSKDNIEMLKRKYHEGSDPWRVRVLG 234
Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
+FP+ E ++ I +E + RE L +G DIA G D+T++ R G + +
Sbjct: 235 EFPKGESDSLISLEAVETSTIREVNISNDYILNIGADIARYGDDETIIAPRIGGKVFDLL 294
Query: 347 DWSAKLIQET 356
+S K ET
Sbjct: 295 TYSKKDTMET 304
>gi|257883493|ref|ZP_05663146.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|294614775|ref|ZP_06694675.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
gi|294622490|ref|ZP_06701512.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|257819151|gb|EEV46479.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|291592387|gb|EFF23996.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
gi|291598037|gb|EFF29147.1| conserved hypothetical protein [Enterococcus faecium U0317]
Length = 471
Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats.
Identities = 88/327 (26%), Positives = 154/327 (47%), Gaps = 21/327 (6%)
Query: 35 FFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
F P+ G ++++ +P + + + NV N K ++ +G+G+GKT L
Sbjct: 5 FIPFADIGSAIDYYYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTAL 64
Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
A +LW ++ RP +I A + QL + LWAEV+KWL+ ++ + ++ G
Sbjct: 65 EAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG- 123
Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
DS+ + T RT + +P+ G H H M + DEASG D I ++ILG
Sbjct: 124 -----------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAILG 169
Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
+ + +M N + G FYD N + ++ +++ + + + E I+ +Y
Sbjct: 170 TLSGFD--NKLLMCGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKY 227
Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL---IMGCDIAGEGGD 330
G +SDVAR+ I G+FP+ +++FI +E A ++ D L +G D+A G D
Sbjct: 228 GKESDVARVRIFGEFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDD 287
Query: 331 KTVVVFRRGNIIEHIFDWSAKLIQETN 357
T++ R +S + ET
Sbjct: 288 STILFPRIATRALEYEKYSKRSTMETT 314
>gi|228950291|ref|ZP_04112468.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228809453|gb|EEM55897.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 495
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 85/373 (22%), Positives = 157/373 (42%), Gaps = 62/373 (16%)
Query: 1 MPRLISTDQKLEQELHEML--MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58
+ ++T++++ Q++ L ++ + ++F ++ +P WQ E
Sbjct: 3 VSNDVTTEEEVLQDIITQLLEIYVDDPVAFVEDILEV--------------EPDPWQKEV 48
Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
+ + H H ++ +G+G+GKT + +W+ +W + RP IIC A ++
Sbjct: 49 LNDIANHSH------------VSVRSGQGVGKTAMESWICIWFLCCRPYPKIICTAPTKQ 96
Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
QL + LWAE++KWL+ + + ++ G+ + T +T +
Sbjct: 97 QLYDVLWAEIAKWLNSSQVKDLLKWTKTKIYMKGF------------EDRWFATAKTAT- 143
Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
RP+ G H + M DEASG D I ++ILG + M N + +G F+
Sbjct: 144 -RPENMQGFHEDY-MLFIADEASGIADDIMEAILGTLS--GSENKLFMCGNPTKTSGVFF 199
Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
D N +K +++ + E + +YG SDV R+ + G+FP+ E + FI
Sbjct: 200 DSHNKDRALYKSHKVSSADSPRTSKKNIEMLKKKYGEGSDVYRVRVEGEFPRGEADAFIS 259
Query: 299 HNYIEEAMSREAIDDLY-----------------APLIMGCDIAGEGGDKTVVVFRRGNI 341
E A RE A + +GCD+A G D+T++ RRG
Sbjct: 260 LETAEAARMREVYKVEVIENEEEESTVKEIIPDTAVVEIGCDVARFGSDETIIATRRGWK 319
Query: 342 IEHIFDWSAKLIQ 354
+ + +
Sbjct: 320 VLPLQVHHQRDTM 332
>gi|261208032|ref|ZP_05922709.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289567088|ref|ZP_06447483.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|260077749|gb|EEW65463.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289161103|gb|EFD09008.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
Length = 471
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 88/327 (26%), Positives = 154/327 (47%), Gaps = 21/327 (6%)
Query: 35 FFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
F P+ G ++++ +P + + + NV N K ++ +G+G+GKT L
Sbjct: 5 FIPFADIGAAIDYYYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTAL 64
Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
A +LW ++ RP +I A + QL + LWAEV+KWL+ ++ + ++ G
Sbjct: 65 EAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG- 123
Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
DS+ + T RT + +P+ G H H M + DEASG D I ++ILG
Sbjct: 124 -----------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAILG 169
Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
+ + +M N + G FYD N + ++ +++ + + + E I+ +Y
Sbjct: 170 TLSGFD--NKLLMCGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKY 227
Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL---IMGCDIAGEGGD 330
G +SDVAR+ I G+FP+ +++FI +E A ++ D L +G D+A G D
Sbjct: 228 GKESDVARVRIFGEFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDD 287
Query: 331 KTVVVFRRGNIIEHIFDWSAKLIQETN 357
T++ R +S + ET
Sbjct: 288 STILFPRIATRALEYEKYSKRSTMETT 314
>gi|150016512|ref|YP_001308766.1| hypothetical protein Cbei_1636 [Clostridium beijerinckii NCIMB
8052]
gi|149902977|gb|ABR33810.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
8052]
Length = 470
Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats.
Identities = 85/312 (27%), Positives = 142/312 (45%), Gaps = 18/312 (5%)
Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
++ P + + M S V + K ++ +G+G+GKT L + ++ W + TRP
Sbjct: 12 YWDNPVWFAEDMMNFHADKWQSEVLMALAQSPKVSVRSGQGVGKTGLESIVVTWYLCTRP 71
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+I A + QL + LWAE+SKWL+ + E ++ G+ S
Sbjct: 72 FPKVIATAPTRQQLYDVLWAEISKWLASSKIENLLEWTKTKIYMKGY------------S 119
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
+ + T +T + RP+ G H + M DEASG D I ++ILG T +M
Sbjct: 120 ERWWATAKTAT--RPENMQGFHEDY-MLFVVDEASGVADPIMEAILGTLTGY--ENKLLM 174
Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
N R +G FYD N + +K +++ + E + +Y SDV R+ + G
Sbjct: 175 CGNPTRTSGTFYDSHNRDRDLYKTFKVSSLESPRTSKDNIEMLKRKYHEGSDVWRVRVEG 234
Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
+FP+ E ++ I Y E A + + L +G DIA G D++V+ R GN + +
Sbjct: 235 EFPKGESDSLISLEYAETATITKINNIHNNFTLHIGADIARFGNDESVIAPRIGNKVFDL 294
Query: 346 FDWSAKLIQETN 357
++ K ET
Sbjct: 295 LTYTKKDTMETT 306
>gi|332981151|ref|YP_004462592.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
gi|332698829|gb|AEE95770.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
Length = 461
Score = 344 bits (883), Expect = 9e-93, Method: Composition-based stats.
Identities = 88/309 (28%), Positives = 144/309 (46%), Gaps = 32/309 (10%)
Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
++P WQ E ++A+ + + A+ +G G+GKT L AW +LW + TRP
Sbjct: 25 AEPDDWQAETLQALADN------------PRVAVRSGHGVGKTALEAWALLWFLFTRPYP 72
Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
I C A + QL + LWAE SKWL P + +FE Q + +
Sbjct: 73 KIPCTAPTREQLHDILWAEASKWLERAPALKPYFEWQKTRIVQKQY------------PG 120
Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
+ T RT +P+ G H H + + DEASG D I ++I G T + +M
Sbjct: 121 RWFATARTS--NKPENMAGFHEEHLLFII-DEASGIADNIFETIEGALTTSD--AKLLMC 175
Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
N + +G F+D F + ++ + + + E + +Y DSDV R+ +LG+
Sbjct: 176 GNPTKNSGVFHDAFFKDRSLYWTRKVSCLDSQRVTLEYAERLKRKYHEDSDVYRVRVLGE 235
Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
FP+ E + FI + +E A R+ D L +G D+A G D+TV+ R G + ++
Sbjct: 236 FPKAEPDTFISLDIVEAATMRDVEPD--GVLEIGVDVARFGDDETVLAARAGLKLVYLKA 293
Query: 348 WSAKLIQET 356
++ + T
Sbjct: 294 YTKQDTMTT 302
>gi|290968649|ref|ZP_06560187.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
gi|290781302|gb|EFD93892.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
Length = 487
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 94/344 (27%), Positives = 158/344 (45%), Gaps = 23/344 (6%)
Query: 13 QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72
+++ + FV F W + ++ P WQ++ ++ V
Sbjct: 4 EDIELLQALGSLASDPVAFVYFAFDWDSEELKGQN---PQTWQIKTLKEVGEGL------ 54
Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
S T + A ++G GIGK+ L AW++LW ISTRP + AN+ TQL+ WAE+SKW
Sbjct: 55 SLSTALQHATASGHGIGKSALVAWLILWAISTRPDTRGVVTANTATQLETKTWAELSKWY 114
Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-H 191
+ + +F + S ++ + + I +S +R ++F G HN +
Sbjct: 115 HLFRGKKFFTLTSTAIF----------CRQEGHERTWRIDAIPWSVDRTESFAGLHNQGN 164
Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
+ + DEAS + I + G T+ + W++ N R G F+D F+ + W
Sbjct: 165 RLLLIFDEASAIDNKIWEVAEGALTDKDTEILWLVFGNPTRSTGRFFDCFHKYKKSWITQ 224
Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
+ID+RTV+ + + I YG+DSD ++ +LG+FP FI + A R +
Sbjct: 225 KIDSRTVDISNKTQLQKWIQTYGIDSDFVKVRVLGEFPDTSDTQFISTAIVRTAWERRPL 284
Query: 312 DDL---YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+AP I+G D A GGD TV+ R+G E + ++
Sbjct: 285 RTAEYDFAPCIIGMDPAWTGGDSTVIFLRQGFFSEKLAEYKQND 328
>gi|308069786|ref|YP_003871391.1| hypothetical protein PPE_03030 [Paenibacillus polymyxa E681]
gi|305859065|gb|ADM70853.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 452
Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats.
Identities = 77/307 (25%), Positives = 125/307 (40%), Gaps = 30/307 (9%)
Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
P WQ + + + + ++ +G+G+GKT L A LW +S P +
Sbjct: 6 PDDWQASTLMDLANN------------PRVSVRSGQGVGKTGLEAATALWFLSCFPYPKV 53
Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
IC A + QL + LWAE++KW S P + + ++ + + +
Sbjct: 54 ICTAPTRQQLHDVLWAEINKWQSKSPVLKRILKWTKTKIYMKNY------------EERW 101
Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
T RT + +P+ G H + M DEASG D I ++ILG + +M N
Sbjct: 102 FATARTAT--KPENMQGLHEDY-MLFIVDEASGVADPIMEAILGTLSGEFNKI--LMCGN 156
Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
+ +G FYD N D+K ++ + +YG SDV R+ + G+FP
Sbjct: 157 PTKTSGVFYDSHNKDRADYKTRKVSCLDSPRTSKDNIAMLKRKYGEGSDVWRVRVEGEFP 216
Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
+ + FI E A ++ L +G D+A G D+T + G I
Sbjct: 217 RGGSDTFISLEVAEFAAKEVKLEPTGDMLTIGVDVARFGDDETSMFAGIGPRIVGEHHHF 276
Query: 350 AKLIQET 356
K T
Sbjct: 277 KKGTMVT 283
>gi|153810665|ref|ZP_01963333.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
gi|149833061|gb|EDM88143.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
Length = 469
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 88/314 (28%), Positives = 144/314 (45%), Gaps = 19/314 (6%)
Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
L + + P + + ++A + S ++ +G GIGK+ + AW ++W + T
Sbjct: 8 LYYANHPVEFVQDILKADPDPEQKKILRSLVENQMTSVRSGHGIGKSAVEAWSVIWFMCT 67
Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMG 163
P I C A ++ QL + LWAE+SKW L+ G
Sbjct: 68 HPYPKIPCTAPTQHQLFDILWAEISKWKRNNKTLDSELIWTKEKLYMKG----------- 116
Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
++ + RT S PD G H H + + DEASG D I + +LG + P
Sbjct: 117 -HAEEWFAVARTAST--PDALQGFHAEHMLYII-DEASGVEDKIFEPVLGALST--PGAK 170
Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
+M N +L+G+FYD N E + + ID R + F + II+ YG DSDV R+
Sbjct: 171 LLMCGNPTQLSGFFYDSHNKNREQYSTFHIDGRNSTRVSQEFVQTIINMYGEDSDVFRVR 230
Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDKTVVVFRRGNII 342
+ G FP E + +IP +E++++ E + +I +GCD+A G DKTV+ +R +
Sbjct: 231 VAGDFPLAEDDIYIPLPLVEKSIATEYFPRRHPQIIHIGCDVARFGTDKTVIGYRTDEKV 290
Query: 343 EHIFDWSAKLIQET 356
+ + +T
Sbjct: 291 QFFKKRVGQDTMKT 304
>gi|323486060|ref|ZP_08091391.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
WAL-14163]
gi|323400627|gb|EGA92994.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
WAL-14163]
Length = 476
Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats.
Identities = 83/312 (26%), Positives = 138/312 (44%), Gaps = 19/312 (6%)
Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
+ P + E + K AI +G+G+GKT + A +LW + P
Sbjct: 20 YRKNPVLFAQEVLLFEPDDWQKQALMDLAESPKVAIKSGQGVGKTGMEAVALLWFLCCYP 79
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGID 165
I+ A ++ QL + LW+EVSKW+S P + ++ G +
Sbjct: 80 YPRIVATAPTKQQLHDVLWSEVSKWMSKSPLLSDILKWTKTYIYMVG------------N 127
Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
K + RT + +P+ G H + M DEASG D I ++ILG + N +
Sbjct: 128 EKRWFAVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLS--GANNKLL 182
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
M N R +G FYD FN+ ++ + + + + + E +I +YG DS+V + +
Sbjct: 183 MCGNPTRTSGTFYDAFNVDRSIYRCHTVSSADSKRTNKQNIESLIRKYGKDSNVVLVRVF 242
Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDKTVVVFRRGNIIEH 344
G+FP+QE + FI + +E + DD+ I G D+A G D+TV+ G I
Sbjct: 243 GEFPKQEDDVFIALSIVEHCCMLDLPDDVPIKRISFGVDVARYGSDETVIAKNVGGRITL 302
Query: 345 IFDWSAKLIQET 356
+ + + T
Sbjct: 303 PVSFRGQSLMTT 314
>gi|54302246|ref|YP_132239.1| terminase large subunit [Photobacterium profundum SS9]
gi|46915667|emb|CAG22439.1| hypothetical protein PBPRB0566 [Photobacterium profundum SS9]
Length = 513
Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats.
Identities = 97/354 (27%), Positives = 155/354 (43%), Gaps = 29/354 (8%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIK------------GKPLEHF 48
M + + + Q ++ + L FVM +PW +
Sbjct: 1 MAKKEEINYEH-QLAIDIGGFYDDPL---GFVMYAYPWDTDPDLQIVKLPEPWASKYDSV 56
Query: 49 SQPHRWQLEFMEAV-DVHCHSNVNNSNPT-IFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
P W E + + +V ++ N +P F +IS+G GIGK+ ++W++ +++STRP
Sbjct: 57 YGPDAWFCEMCDQLQEVIRKNDFNGVDPVDAFLYSISSGHGIGKSCASSWLIHFVMSTRP 116
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ +N+ QL+ W E+ KW L ++HWF + + + ++ + E
Sbjct: 117 NSKGVVTSNTSEQLRTKTWGELGKWTKKLINKHWFVYNNGKGNMNFYHKDYAE------- 169
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAV-FNDEASGTPDIINKSILGFFTELNPNRFWI 225
+ + +T EE ++F G H DEAS PD I + G T+ P FW
Sbjct: 170 -TWRVDAQTCREENSESFAGLHCASSTPWYLFDEASAVPDKIWEVAEGGLTDGEP--FWF 226
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
+ N R +G F + + + W R QID+ TV+ + S YG DSD R+ +
Sbjct: 227 VFGNPTRNSGRFRECWRRFRQRWNRKQIDSSTVQVTNKKKISEWESDYGEDSDFYRVRVK 286
Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
G FP N I +E AMSR A +P +M D+A GGD V FR G
Sbjct: 287 GVFPSASSNQKISGALLEAAMSRTAHVIPGSPRVMSLDVARGGGDNCVFRFRHG 340
>gi|255282256|ref|ZP_05346811.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
gi|255267204|gb|EET60409.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
Length = 506
Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats.
Identities = 75/311 (24%), Positives = 135/311 (43%), Gaps = 33/311 (10%)
Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
+P WQ + + + + A+ +G+G+GKT + A +LW +S
Sbjct: 49 EPDEWQRDALMDLAE------------ESRVAVKSGQGVGKTGIEAVAVLWFLSCFRYAR 96
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
++ A + QL + LW+E++KW P + ++ G+ K
Sbjct: 97 VVATAPTRQQLHDVLWSEIAKWQERSPLLKAILRWTKTYVYVKGY------------EKR 144
Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
+ RT + +P+ G H + M DEASG D I +++LG + N +M
Sbjct: 145 WFAVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAVLGTLS--GGNNKLLMCG 199
Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
N R G FYD F + + + + D + +I +YG DS++ R+ + G F
Sbjct: 200 NPTRTTGTFYDAFTKDRSIFACHTVSSLDSSRTDKNNIDALIRKYGEDSNLVRVRVKGLF 259
Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDL---YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
P+Q+ + FI I++ SR+ A +I+G D+A G D+TV+ I+ +
Sbjct: 260 PKQDDDVFISQELIDQCTSRQYELPESRGMAQVILGVDVARYGNDETVIYRNFKGRIKMV 319
Query: 346 FDWSAKLIQET 356
+ + + T
Sbjct: 320 RNRRGQNLMAT 330
>gi|332976102|gb|EGK12970.1| hypothetical protein HMPREF9374_1123 [Desmospora sp. 8437]
Length = 462
Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats.
Identities = 89/313 (28%), Positives = 142/313 (45%), Gaps = 31/313 (9%)
Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
++P WQ D+ + +N + A+ AG G+GKT AW +LW + TRP
Sbjct: 31 AEPDEWQ-------DIALQALADNQ-----RVAVRAGHGVGKTATEAWAVLWFLLTRPFP 78
Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
I C A ++ QL + LW E++KWL P + E Q + + +
Sbjct: 79 KIPCTAPTKPQLMDVLWPEIAKWLMNAPELAPYVEWQKTRVVMKQY------------EE 126
Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
+ T RT +P+ G H H + V DEASG + I ++I G T +M
Sbjct: 127 RWFATARTS--NKPENMAGFHEEHLLFVI-DEASGVDNAIFETIDGALTTAG--SKLVMF 181
Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
N R NG FYD F+ + + Y+I + + + +YG DSD+ R+ + G+
Sbjct: 182 GNPTRTNGVFYDAFHQDRDLYWTYKISCLDSKMASKDYARNMARKYGEDSDIYRVRVQGE 241
Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
FPQ + ++FIP +E+A R+ L +G D+A G D+TV+ R G + +
Sbjct: 242 FPQGDPDSFIPLELVEDARVRDLEWIDEDELHIGVDVARFGSDETVLAARIGPVAFRLDR 301
Query: 348 WSAKLIQETNQEG 360
+ + T G
Sbjct: 302 YGGR-TPTTETVG 313
>gi|160940775|ref|ZP_02088117.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
BAA-613]
gi|158436295|gb|EDP14062.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
BAA-613]
Length = 484
Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats.
Identities = 80/300 (26%), Positives = 131/300 (43%), Gaps = 19/300 (6%)
Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
L + P + + + A ++ S ++ +G GIGK+ + AW ++W +
Sbjct: 6 AVLFYADNPIYFVEDVIRAKPDEKQRDILRSLRDYPMTSVRSGHGIGKSAVEAWSVIWYM 65
Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQS 161
TRP I C A +E QL + LWAE+SKW+ P R L+ G
Sbjct: 66 CTRPFPKIPCTAPTEHQLMDVLWAEISKWMRNNPALRDDLIWTKEKLYMQG--------- 116
Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
+ + RT + P+ G H H + + DEASG D + + +LG T +
Sbjct: 117 ---HPEEWFAVPRTAT--NPEALQGFHAEHVLYII-DEASGVSDKVFEPVLGAMTGED-- 168
Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
+M N RL G+FYD + E + +D R + + F + II +G DSDV R
Sbjct: 169 AKLLMMGNPTRLAGFFYDSHHRNREQYSAIHVDGRDSQHVSRTFVQKIIDMFGEDSDVFR 228
Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
+ + GQFP+ ++ I + EEA + + + +G D+A G D + +
Sbjct: 229 VRVAGQFPKSTPDSLIAMEWCEEAANLQVY-APGGQIDIGVDVARYGDDSSALYPLIDKK 287
>gi|253578914|ref|ZP_04856185.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849857|gb|EES77816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 473
Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats.
Identities = 78/311 (25%), Positives = 141/311 (45%), Gaps = 19/311 (6%)
Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
P + E + + K +I +G+G+GKT L A + LW ++ P
Sbjct: 4 DDPVMFFREVLNFEPDEWQAQAARDLAANPKVSIKSGQGVGKTGLEAAVFLWFVTCFPHP 63
Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
I+ A ++ QL + LW+E+SKW+S E+ S+ L + Y ++ + K
Sbjct: 64 RIVATAPTKQQLHDVLWSEISKWMSKS------ELLSILLKWTKTYVYMVGE-----EKR 112
Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
+ RT + +P+ G H + M DEASG D I ++ILG + N ++
Sbjct: 113 WFGVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLS--GANNKLLLCG 167
Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
N + +G FYD +K + + + + + ++ +YG DS+V R+ + G+F
Sbjct: 168 NPTKTSGTFYDSHTRDRALYKCHTVSSMDSTRTNKENIDSLVRKYGWDSNVVRVRVRGEF 227
Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAP---LIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
P QE + FIP + IE+ S+ D + +G D+A G D+T++ + +
Sbjct: 228 PNQEDDVFIPLSLIEQCSSKLLELDDADGMQFVSLGVDVARFGDDETIIYRNYHGHCKIV 287
Query: 346 FDWSAKLIQET 356
+ + + T
Sbjct: 288 RNRRGQNLMAT 298
>gi|167767949|ref|ZP_02440002.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
gi|167710278|gb|EDS20857.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
gi|291560988|emb|CBL39788.1| hypothetical protein CL2_30180 [butyrate-producing bacterium SSC/2]
Length = 473
Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats.
Identities = 78/310 (25%), Positives = 131/310 (42%), Gaps = 31/310 (10%)
Query: 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
F P WQ E A+ + K I +G+G+GKT A +LW +S
Sbjct: 30 FFYPDEWQKEAAFALRDN------------SKVTIKSGQGVGKTGFEAATLLWFLSCFEN 77
Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
++ A + QL + LWAEVSKW S P + + + G
Sbjct: 78 ARVVATAPTLHQLNDVLWAEVSKWQSKSPLLKEILQWTKTKISMIG------------SK 125
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
+ + RT + P+ G H + M DEASG D I ++ILG T N ++
Sbjct: 126 ERWYAVARTATT--PENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLT--GSNNKLLL 180
Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
N + +G FYD + + +++ + + + +I +YG +S+V R+ + G
Sbjct: 181 CGNPTKASGTFYDSHTSDRKLYYCITVNSAESKRTNKDNIDSLIRKYGEESNVVRVRVKG 240
Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
FP+Q+ + ++P +E ++ E I +G D+A G D TV+ N I
Sbjct: 241 LFPKQDDDVYMPLEMLEASIILEEIPPADI-CTLGVDVARFGDDDTVIARNMNNKITLEK 299
Query: 347 DWSAKLIQET 356
+ + +T
Sbjct: 300 IRHGQDLMKT 309
>gi|266623290|ref|ZP_06116225.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
gi|288864932|gb|EFC97230.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
Length = 484
Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats.
Identities = 73/297 (24%), Positives = 139/297 (46%), Gaps = 19/297 (6%)
Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
L + +P + + + ++ S ++ +G G+GK+ + +W ++W
Sbjct: 4 DDAVLFYADEPIYFVEDIIRVTPDQKQRDILRSLRDYPMTSVRSGHGVGKSAVESWSVIW 63
Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLE 159
+ TRP I C A ++ QL + LWAE+SKWL P ++ ++ +G+
Sbjct: 64 FLCTRPFPKIPCTAPTQHQLYDILWAEISKWLRNNPELKNDIIWTQQRVYMNGY------ 117
Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
+ + RT + P+ G H H + + DEASG D + + +LG T +
Sbjct: 118 ------PEEWFAVPRTAT--NPEALQGFHAEHVLYII-DEASGVSDKVFEPVLGAMTGED 168
Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
+M N RL+G+F+D + ++ ID R + ++ F + II+ +G+DSDV
Sbjct: 169 --AKLLMMGNPTRLSGFFFDSHHKSRSEYSAMHIDGRDSQHVNQKFVQKIINMFGMDSDV 226
Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
R+ + GQFP+ ++ I ++ E A + + + + +G D+A G D + +
Sbjct: 227 FRVRVAGQFPKSTPDSLIMMDWCEAATQLKP-ETVRNRVDIGVDVARYGDDSSALYP 282
>gi|319956916|ref|YP_004168179.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
16511]
gi|319419320|gb|ADV46430.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
16511]
Length = 462
Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 95/331 (28%), Positives = 148/331 (44%), Gaps = 42/331 (12%)
Query: 42 GKPLEHF------SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
K LE F ++P + Q++ + A+D K +I +G G GKTTL A
Sbjct: 13 AKSLEFFVRVILKAKPTKQQMKAIRAIDQGKK-----------KISIRSGHGTGKTTLLA 61
Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
W++LW R I A + QL + L E+ KW +P ++ E++ +
Sbjct: 62 WIVLWWGLGREDAKIPMTAPTGHQLYDLLMPEIRKWREKMPVQYQNEVEVKTEKID---- 117
Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
+ RT +++P+ G H T+ +A DEASG P +I + G
Sbjct: 118 ---------FANGNFAVPRTARKDQPEALQGFHATN-LAFIIDEASGIPQVIFEVAEGAM 167
Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
T + IM +N R G+FYD + W+ +Q + E + + E +YG
Sbjct: 168 TGEST--LVIMAANPTRTEGYFYDSHHKNRWQWECFQFNAEESENVSKEWIEEKKRQYGE 225
Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
DSDV R+ I G+FP+Q N +++A +RE +DD A + G D+A G DK+V+
Sbjct: 226 DSDVYRVRIKGEFPRQSSNAVFSLQEVDDATTREIVDDSGAEV-WGLDVADFGDDKSVLA 284
Query: 336 FRRGNIIEHIF--------DWSAKLIQETNQ 358
R+G I D + LI E NQ
Sbjct: 285 KRKGKHFHEITARSGLTLPDLAGWLIYEYNQ 315
>gi|289578588|ref|YP_003477215.1| hypothetical protein Thit_1395 [Thermoanaerobacter italicus Ab9]
gi|289528301|gb|ADD02653.1| conserved hypothetical protein [Thermoanaerobacter italicus Ab9]
Length = 460
Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats.
Identities = 76/320 (23%), Positives = 133/320 (41%), Gaps = 45/320 (14%)
Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
P Q E ++AV H + A+ A G+GKT + AW+ LW + T +
Sbjct: 31 PWEKQEEILKAVRDHK------------RVAVRACHGVGKTKVAAWVALWFLYTHHNSKV 78
Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
I A + Q++N LW E+ + ++L+ + + + +
Sbjct: 79 ITTAPTWHQVENLLWREIHAAHAASRI--------------PLGGKVLQTQIELGEQWF- 123
Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
S ++P+ F G H H + + DEASG + GF T + ++ N
Sbjct: 124 --ALGLSTDKPERFQGFHAEHILLIV-DEASGVEQYTFDAAEGFLTSIG--AKLLLIGNP 178
Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG-----------IDSGFHEGIISRYGLDSDV 279
+L+G FY+ F PL + + I + + E ++G DS +
Sbjct: 179 TQLSGEFYNAFRSPL--YHKIHISAFDSPNLKAGKIVRPYLVTPEWVEDKRLKWGEDSPL 236
Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
+LG+FP+Q + IP +IE A R + + P+ +G D+A G D TV++ RRG
Sbjct: 237 WYSRVLGEFPEQGNDTLIPLAWIEAAQQRWHMTEAGEPVEIGADVARYGTDTTVIMLRRG 296
Query: 340 NIIEHIFDWSAKLIQETNQE 359
+ E ++ + E +
Sbjct: 297 DKAEIVYQLRGQDTMEVTGK 316
>gi|304399103|ref|ZP_07380971.1| DNA packaging protein [Pantoea sp. aB]
gi|304353343|gb|EFM17722.1| DNA packaging protein [Pantoea sp. aB]
Length = 503
Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats.
Identities = 68/316 (21%), Positives = 132/316 (41%), Gaps = 32/316 (10%)
Query: 28 FKNFVMRF-FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
+++ V+R+ + W + +E F WQ E + +N+ T + +++G
Sbjct: 16 WRDMVIRYRYNWALA--VVELFGMIPTWQQEEI----------MNSVQETGSQTTVTSGH 63
Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
G GK++L A M+L + P +I +AN Q+K ++ V + + RH +
Sbjct: 64 GTGKSSLTAMMLLIYMIMYPDARVIIVANKIGQVKTGVFKYVKTYWANAARRHPWLQNYF 123
Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
+L + +Y + + + + C+ Y + G H H + + DEASG D
Sbjct: 124 TLTDTMFYEKSRKGI-------WEVLCKGYRLGNEEALAGEHAAHILLIL-DEASGISDK 175
Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDWKRYQIDTRTVE 259
+ G TE + +M S R +G+FYD + P W +++
Sbjct: 176 AIAIMRGALTEED--NRMLMMSQPTRPSGYFYDSHHSLARHPDNPNGFWNAIVLNSEEAP 233
Query: 260 GIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
+ F + Y G DS +++LG+FP+ + + + A R+ +
Sbjct: 234 HVTLKFIREKLVEYGGRDSLEYMVKVLGRFPRNVSGYLLGRDECDRAARRKVYLEKGWGW 293
Query: 319 IMGCDIAGEGGDKTVV 334
+ D+ G G DK+++
Sbjct: 294 VATADV-GNGRDKSIL 308
>gi|332980681|ref|YP_004462122.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
gi|332698359|gb|AEE95300.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
Length = 486
Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats.
Identities = 75/342 (21%), Positives = 128/342 (37%), Gaps = 62/342 (18%)
Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
++P + Q++ + AV + + A+ + G GK+ + ++LW + +
Sbjct: 28 TRPWKKQIDIISAVRDN------------PRTAVRSCHGAGKSFIAGQVILWFLYSFYPS 75
Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
++ A + Q++ +W EV LL + I
Sbjct: 76 IVLSTAPTWRQVEKLIWKEVRASYRRSKV--------------PLGGNLLPKRPEIQIIQ 121
Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
S PD F G H + + V DEA+G P+ I ++I G T + ++
Sbjct: 122 DEWYAVGLSTNEPDRFQGFHEEN-ILVVVDEAAGVPEEIFEAIEGVLTSEH--ARLLLLG 178
Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG---------------------------- 260
N + G FY+ F P W+ I T
Sbjct: 179 NPTSVGGTFYNAFRTP--GWENISISAFTTPNFTAFGITEDDIINKTWESKITNSLPNPK 236
Query: 261 -IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
I + R+G +S + +LGQFP + + IP +IE AM+R P+
Sbjct: 237 LITPAWVADKYRRWGPNSPAYQARVLGQFPSEGEDTLIPLAWIEAAMARWEDTPEGEPIE 296
Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
+G D+A G DKTV+ RRG + + ++ + ET GC
Sbjct: 297 IGVDVARFGSDKTVIAARRGQKVLPLNVYAKQDTMET--VGC 336
>gi|312964323|ref|ZP_07778627.1| terminase B protein [Escherichia coli 2362-75]
gi|331655801|ref|ZP_08356790.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M718]
gi|312291036|gb|EFR18910.1| terminase B protein [Escherichia coli 2362-75]
gi|323186470|gb|EFZ71817.1| terminase B protein [Escherichia coli 1357]
gi|323969205|gb|EGB64507.1| terminase B protein [Escherichia coli TA007]
gi|325495624|gb|EGC93488.1| DNA pacase B subunit [Escherichia fergusonii ECD227]
gi|331046575|gb|EGI18664.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M718]
Length = 494
Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats.
Identities = 61/312 (19%), Positives = 122/312 (39%), Gaps = 31/312 (9%)
Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
+ + W L F + WQ + + + + K ++S+G G GK+
Sbjct: 16 ALYRYDWIAAADVL--FGKTPTWQQDLI----------IESVQEQGSKTSVSSGHGTGKS 63
Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
+ + M++ I PG I +AN Q+ ++ + + R + L +
Sbjct: 64 DMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSRFPWLADYFVLTET 123
Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
+Y E+ + + +T+ + + + G H H + + DEASG D I
Sbjct: 124 AFY-EVTGKGV------WTVVPKGFRLGSEEALAGEHADHLLYII-DEASGVSDRAFGII 175
Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSG 264
G T + + S R +G+FYD + P + +++ +
Sbjct: 176 TGALTGQDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPDGVYTAITLNSEESPLVTPA 233
Query: 265 FHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
F + ++ Y G D+ + I++ G FP+ + + + +E A R+ + D
Sbjct: 234 FIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRKVKIAKGWGWLACVD 293
Query: 324 IA-GEGGDKTVV 334
+A G G DK+V+
Sbjct: 294 VAGGTGRDKSVI 305
>gi|324111095|gb|EGC05081.1| terminase B protein [Escherichia fergusonii B253]
Length = 494
Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats.
Identities = 61/312 (19%), Positives = 122/312 (39%), Gaps = 31/312 (9%)
Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
+ + W L F + WQ + + + + K ++S+G G GK+
Sbjct: 16 ALYRYDWIAAADVL--FGKTPTWQQDLI----------IESVQEQGSKTSVSSGHGTGKS 63
Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
+ + M++ I PG I +AN Q+ ++ + + R + L +
Sbjct: 64 DMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSRFPWLADYFVLTET 123
Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
+Y E+ + + +T+ + + + G H H + + DEASG D I
Sbjct: 124 AFY-EVTGKGV------WTVVPKGFRLGSEEALAGEHADHLLYII-DEASGVSDRAFGII 175
Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSG 264
G T + + S R +G+FYD + P + +++ +
Sbjct: 176 TGALTGQDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPDGVYTAITLNSEESPLVTPA 233
Query: 265 FHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
F + ++ Y G D+ + I++ G FP+ + + + +E A R+ + D
Sbjct: 234 FIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRKVKIAKGWGWLACVD 293
Query: 324 IA-GEGGDKTVV 334
+A G G DK+V+
Sbjct: 294 VAGGTGRDKSVI 305
>gi|56266643|gb|AAV84926.1| DNA pacase B subunit [Enterobacteria phage phiW39]
Length = 494
Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats.
Identities = 61/312 (19%), Positives = 122/312 (39%), Gaps = 31/312 (9%)
Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
+ + W L F + WQ + + + + K ++S+G G GK+
Sbjct: 16 ALYRYDWIAAADVL--FGKTPTWQQDLI----------IESVQEQGSKTSVSSGHGTGKS 63
Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
+ + M++ I PG I +AN Q+ ++ + + R + L +
Sbjct: 64 DMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSRFPWLADYFVLTET 123
Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
+Y E+ + + +T+ + + + G H H + + DEASG D I
Sbjct: 124 AFY-EITGKGV------WTVVPKGFRLGSEEALAGEHADHLLYII-DEASGVSDRAFGII 175
Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSG 264
G T + + S R +G+FYD + P + +++ +
Sbjct: 176 TGALTGQDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPDGVYTAITLNSEESPLVTPA 233
Query: 265 FHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
F + ++ Y G D+ + I++ G FP+ + + + +E A R+ + D
Sbjct: 234 FIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRKVKIAKGWGWLACVD 293
Query: 324 IA-GEGGDKTVV 334
+A G G DK+V+
Sbjct: 294 VAGGTGRDKSVI 305
>gi|168467778|ref|ZP_02701615.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|195629119|gb|EDX48493.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
Length = 494
Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 62/310 (20%), Positives = 122/310 (39%), Gaps = 31/310 (10%)
Query: 34 RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
+ W + F + WQ + + + + K ++S+G G GK+ +
Sbjct: 18 YRYDWIAAADVM--FGKTPTWQQDQI----------IESVQEPGSKTSVSSGHGTGKSDM 65
Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
+ M++ I PG I +AN Q+ ++ + S R + + L + +
Sbjct: 66 TSIMIMLFIIMFPGARAIIVANKIQQVMTGIFKYLKINWSTATSRFPWLAEYFVLTDTSF 125
Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
Y E+ + + +T+ + + + G H H + + DEASG D + G
Sbjct: 126 Y-EITSKGV------WTVVPKGFRLGNEEALAGEHADHLLYII-DEASGVSDKAFGIMTG 177
Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSGFH 266
T + + S R +G+FYD + P + +++ + F
Sbjct: 178 ALTGKDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPNGIYTAITLNSEESPLVTPEFI 235
Query: 267 EGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
+ ++ Y G DS + I++ G FP+ + + + +E A R+ I D+A
Sbjct: 236 KMKLAEYGGRDSPMYLIKVRGLFPKTQDGFLLGRDEVERASRRKVKIAKGWGWIACVDVA 295
Query: 326 -GEGGDKTVV 334
G G DK+V+
Sbjct: 296 GGTGRDKSVI 305
>gi|262316909|emb|CBA18135.1| putative terminase B [Paenibacillus phage phiBP]
Length = 248
Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats.
Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 18/243 (7%)
Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
+ P + E + +V++ ++ +G+G+GKT L A + LW + P
Sbjct: 23 YRKSPKTFFKEILNFSPDKWQESVSDDIAKYRFVSVRSGQGVGKTALEAAISLWFLCCFP 82
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGID 165
++C A + QL + LWAE+SKW S P + + ++ +
Sbjct: 83 FPRVVCTAPTRQQLNDVLWAEISKWQSQSPILKRILKWTKTKIYMKNY------------ 130
Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
+ + T RT + +P+ G H + M DEASG D I +I G + + N+
Sbjct: 131 EERWFATARTAT--KPENMQGFHEDY-MLFIVDEASGVDDRIMAAIFGTLSG-DYNK-LF 185
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
M N + +G+F+D N ++ +++ E + ++YG SDV R+ +L
Sbjct: 186 MCGNPTKTSGFFFDSHNRDRAIYRTHRVSCLDSPRTSKENIEMLKAKYGEGSDVWRVRVL 245
Query: 286 GQF 288
G+F
Sbjct: 246 GEF 248
>gi|83593922|ref|YP_427674.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
gi|83576836|gb|ABC23387.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
Length = 505
Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats.
Identities = 70/326 (21%), Positives = 122/326 (37%), Gaps = 34/326 (10%)
Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
P Q + A+ P K + AG G+GKTT A + W +
Sbjct: 21 PTAQQAGLLSAI-----------APAGAKVTVRAGHGVGKTTATAAAIWWHLECFDYSKT 69
Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI-DSKHY 169
C A + +QL+ LW+E+++ R +L +A + +
Sbjct: 70 PCTAPTASQLEQILWSELARLRRRADARAQGTGLPAALRLEALFAVSGRAIADRGTPREW 129
Query: 170 TITCRTYSEERPDTFVGPHNTHG------------------MAVFNDEASGTPDIINKSI 211
+ RT ++PD G H + + +EASG PD + +
Sbjct: 130 FVVARTARRDQPDALQGFHASDIDLEAGAGPRLSAKSGGAALMFVIEEASGVPDAVFEVA 189
Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
G + P +M N R G+F + ++ +D G+ G++
Sbjct: 190 EGALSS--PGARLLMVGNPTRNTGFFARSHKRDRASFTALRLRCADSPLVDPGYRAGLVR 247
Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGEGG 329
+YG +S+V R+ G FP+Q+ + I E A++R A +G D+A G
Sbjct: 248 KYGAESNVVRVRADGAFPRQDDDVLIALETAEAALARPLPARMATEDERRLGVDVARFGD 307
Query: 330 DKTVVVFRRGNIIEHIFDWSAKLIQE 355
D+TV + R G ++ I + +
Sbjct: 308 DRTVFLLRIGPVVGAIEVTAGRDTMA 333
>gi|322656964|gb|EFY53248.1| DNA packaging protein [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
Length = 411
Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats.
Identities = 60/271 (22%), Positives = 114/271 (42%), Gaps = 19/271 (7%)
Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
+ T + +++G G GK++L A ++L + P +I +AN Q+K ++ V ++
Sbjct: 49 SVQETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQY 108
Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
+ RH + L + +Y + + C+ Y + G H H
Sbjct: 109 WANAVKRHGWLQTYFVLSDTMFYE-------RSRKGIWEVLCKGYRLGNEEALAGEHAAH 161
Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IP 244
+ + DEASG D + G TE + +M S R +G+FYD + P
Sbjct: 162 LLLIL-DEASGISDKAIGVMTGALTEED--NRMLMLSQPTRPSGYFYDSHHSQAKTPDNP 218
Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
W +++ + F + + Y G DS +++LGQFP++ + + +
Sbjct: 219 KGIWTAIVLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECD 278
Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
A R+ + + + D+ G G DK+V+
Sbjct: 279 RAARRKVLLEKNWGWVATADV-GNGRDKSVL 308
>gi|56266666|gb|AAV84947.1| DNA pacase B subunit [Enterobacteria phage D6]
Length = 502
Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats.
Identities = 60/271 (22%), Positives = 114/271 (42%), Gaps = 19/271 (7%)
Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
+ T + +++G G GK++L A ++L + P +I +AN Q+K ++ V ++
Sbjct: 49 SVQETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQY 108
Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
+ RH + L + +Y + + C+ Y + G H H
Sbjct: 109 WANAVKRHGWLQTYFVLSDTMFYE-------RSRKGIWEVLCKGYRLGNEEALAGEHAAH 161
Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IP 244
+ + DEASG D + G TE + +M S R +G+FYD + P
Sbjct: 162 LLLIL-DEASGISDKAIGVMTGALTEED--NRMLMLSQPTRPSGYFYDSHHSQAKTPDNP 218
Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
W +++ + F + + Y G DS +++LGQFP++ + + +
Sbjct: 219 KGIWTAIVLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECD 278
Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
A R+ + + + D+ G G DK+V+
Sbjct: 279 RAARRKVLLEKNWGWVATADV-GNGRDKSVL 308
>gi|323179619|gb|EFZ65182.1| terminase B protein [Escherichia coli 1180]
Length = 453
Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 113/269 (42%), Gaps = 19/269 (7%)
Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
T + +++G G GK++L A ++L + P +I +AN Q+K ++ V ++ +
Sbjct: 2 QETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWA 61
Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
RH + L + +Y + + C+ Y + G H H +
Sbjct: 62 NAVKRHGWLQTYFVLSDTMFYE-------RSRKGIWEVLCKGYRLGNEEALAGEHAAHLL 114
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLE 246
+ DEASG D + G TE + +M S R +G+FYD + P
Sbjct: 115 LIL-DEASGISDKAIGVMTGALTEED--NRMLMLSQPTRPSGYFYDSHHSQAKTPDNPKG 171
Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
W +++ + F + + Y G DS +++LGQFP++ + + + A
Sbjct: 172 IWTAIVLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRA 231
Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
R+ + + + D+ G G DK+V+
Sbjct: 232 ARRKVLLEKNWGWVATADV-GNGRDKSVL 259
>gi|260871239|ref|YP_003238019.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
gi|257767818|dbj|BAI39311.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
Length = 494
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 59/312 (18%), Positives = 126/312 (40%), Gaps = 31/312 (9%)
Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
+ + W L F + WQ + + + ++ ++++G G GK+
Sbjct: 16 ALYRYDWIAAADVL--FGKTPTWQQDEI----------IESTQQDGSWTSVTSGHGTGKS 63
Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
+ + + + I PG +I +AN Q+ + ++ + + R + + L +
Sbjct: 64 DMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRFPWLSKYFILTET 123
Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
++ E+ + + +TI ++ + G H H + + DEASG D I
Sbjct: 124 SFF-EVTGKGV------WTILIKSCRSGNEEALAGEHADHLLYII-DEASGVSDKAFSVI 175
Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSG 264
G T + + S R +G+FYD + P + +++ +D+
Sbjct: 176 TGALTGKDNRILLL--SQPTRPSGYFYDSHHRLAIRPGNPDGLFTAIILNSEESPLVDAK 233
Query: 265 FHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
F ++ Y G D+ + I++ G+FP+ + + + +E A R+ + D
Sbjct: 234 FIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVKIAKGWGWVACVD 293
Query: 324 IA-GEGGDKTVV 334
+A G G DK+V+
Sbjct: 294 VAGGTGRDKSVI 305
>gi|46401730|ref|YP_006576.1| PacB [Enterobacteria phage P1]
gi|301646767|ref|ZP_07246623.1| putative terminase B protein [Escherichia coli MS 146-1]
gi|129547|sp|P27753|TERL_BPP1 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein B; AltName: Full=PACase B protein; AltName:
Full=Terminase B protein; AltName: Full=Terminase large
subunit
gi|68597607|sp|Q5XLR0|TERL_BPP7 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein B; AltName: Full=PACase B protein; AltName:
Full=Terminase B protein; AltName: Full=Terminase large
subunit
gi|33323612|gb|AAQ07582.1|AF503408_106 PacB [Enterobacteria phage P7]
gi|215636|gb|AAA21724.1| pacB [Enterobacteria phage P1]
gi|33338757|gb|AAQ14080.1| PacB [Enterobacteria phage P1]
gi|33338866|gb|AAQ14188.1| PacB [Enterobacteria phage P1]
gi|54112354|gb|AAV28854.1| PacB [Enterobacteria phage P7]
gi|301075042|gb|EFK89848.1| putative terminase B protein [Escherichia coli MS 146-1]
Length = 494
Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats.
Identities = 59/312 (18%), Positives = 126/312 (40%), Gaps = 31/312 (9%)
Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
+ + W L F + WQ + + + ++ ++++G G GK+
Sbjct: 16 ALYRYDWIAAADVL--FGKTPTWQQDEI----------IESTQQDGSWTSVTSGHGTGKS 63
Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
+ + + + I PG +I +AN Q+ + ++ + + R + + L +
Sbjct: 64 DMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRFPWLSKYFILTET 123
Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
++ E+ + + +TI ++ + G H H + + DEASG D I
Sbjct: 124 SFF-EVTGKGV------WTILIKSCRPGNEEALAGEHADHLLYII-DEASGVSDKAFSVI 175
Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSG 264
G T + + S R +G+FYD + P + +++ +D+
Sbjct: 176 TGALTGKDNRILLL--SQPTRPSGYFYDSHHRLAIRPGNPDGLFTAIILNSEESPLVDAK 233
Query: 265 FHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
F ++ Y G D+ + I++ G+FP+ + + + +E A R+ + D
Sbjct: 234 FIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVKIAKGWGWVACVD 293
Query: 324 IA-GEGGDKTVV 334
+A G G DK+V+
Sbjct: 294 VAGGTGRDKSVI 305
>gi|331649955|ref|ZP_08351031.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M605]
gi|331041212|gb|EGI13366.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M605]
Length = 494
Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats.
Identities = 59/312 (18%), Positives = 126/312 (40%), Gaps = 31/312 (9%)
Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
+ + W L F + WQ + + + ++ ++++G G GK+
Sbjct: 16 ALYRYDWIAAADVL--FGKTPTWQQDEI----------IESTQQDGSWTSVTSGHGTGKS 63
Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
+ + + + I PG +I +AN Q+ + ++ + + R + + L +
Sbjct: 64 DMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRFPWLSKYFILTET 123
Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
++ E+ + + +TI ++ + G H H + + DEASG D I
Sbjct: 124 SFF-EVTGKGV------WTILIKSCRPGNEEALAGEHADHLLYII-DEASGVSDKAFSVI 175
Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-------PLEDWKRYQIDTRTVEGIDSG 264
G T + + S R +G+FYD + P + +++ +D+
Sbjct: 176 TGALTGKDNRILLL--SQPTRPSGYFYDSHHRLAIRPGNPDGLFTAIILNSEESPLVDAK 233
Query: 265 FHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
F ++ Y G D+ + I++ G+FP+ + + + +E A R+ + D
Sbjct: 234 FIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVKIAKGWGWVACVD 293
Query: 324 IA-GEGGDKTVV 334
+A G G DK+V+
Sbjct: 294 VAGGTGRDKSVI 305
>gi|323948959|gb|EGB44853.1| terminase B protein [Escherichia coli H252]
Length = 502
Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats.
Identities = 59/271 (21%), Positives = 114/271 (42%), Gaps = 19/271 (7%)
Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
+ T + +++G G GK++L A ++L + P +I +AN Q+K ++ V ++
Sbjct: 49 SVQETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQY 108
Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
+ RH + L + +Y + + C+ Y + G H H
Sbjct: 109 WANAVKRHGWLQTYFVLSDTMFYE-------RSRKGIWEVLCKGYRLGNEEALAGEHAAH 161
Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IP 244
+ + DEASG D + G TE + +M S R +G+FYD + P
Sbjct: 162 LLLIL-DEASGISDKAIGVMTGALTEED--NRMLMLSQPTRPSGYFYDSHHSRAKTPDNP 218
Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
W +++ + F + + Y G DS +++LGQFP++ + + +
Sbjct: 219 KGIWTAIVLNSEESPFVTPQFIKEKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECD 278
Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
+ R+ + + + D+ G G DK+V+
Sbjct: 279 RSARRKVLLEKNWGWVATADV-GNGRDKSVL 308
>gi|48697461|ref|YP_024846.1| Pas60 [Actinoplanes phage phiAsp2]
gi|47679679|gb|AAT36808.1| Pas60 [Actinoplanes phage phiAsp2]
Length = 492
Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats.
Identities = 74/327 (22%), Positives = 122/327 (37%), Gaps = 32/327 (9%)
Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
P W + ++ + ++ P + A+ G+GK+ A ++ W +TR M
Sbjct: 21 DSPTAWAADCLDVRLAGYQGEILDAVPRERRVAVRGPHGLGKSFSGAILVNWFATTRDLM 80
Query: 109 ----SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
II A++ L+ LW E+ KW + +L P ELL+ + +
Sbjct: 81 GKDWKIITTASAWRHLEVYLWPEIHKWAGRI------NFVALGRAPYNPRTELLDLRLKL 134
Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN----P 220
T +P+ G H + + DEA P SI G F+
Sbjct: 135 THGAATAVA----SNQPERIEGAHAEELLYLL-DEAKIVPPATWDSIEGAFSNAGVDVAD 189
Query: 221 NRFWIMTSNTRRLNGWFYDIFNI--PLEDWKRYQIDTRT---VEGIDSGFHEGIISRYGL 275
N + S +G FYDI EDW + I + + S++G
Sbjct: 190 NAYAFAMSTPGAPSGRFYDIHRRAPGYEDWWTRHVTLEEAIASGRISRAWADQRRSQWGS 249
Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA------IDDLYAPLIMGCDIAGEGG 329
DS V +LG+F + ++ IP ++E A+ R PL G D+ GG
Sbjct: 250 DSAVFHNRVLGEFHASDEDSVIPLAWLEAAIERWHEWDRQGRPSPGGPLWTGVDVGR-GG 308
Query: 330 DKTVVVFRRGNIIEHIFDWSAKLIQET 356
D+TV+ R G + + + T
Sbjct: 309 DETVLAARDGWAV-TLETNRRRDTMAT 334
>gi|269119479|ref|YP_003307656.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
gi|268613357|gb|ACZ07725.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
Length = 499
Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats.
Identities = 67/333 (20%), Positives = 125/333 (37%), Gaps = 41/333 (12%)
Query: 51 PHRWQLEFMEA-VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
P + + + + V + + ++ AG GK++L + + + TRP
Sbjct: 18 PVNFFKDILNFHFLSEDQTRVLQAFNEYRRLSVPAGHSTGKSSLAGGLTTYWLITRPKSR 77
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP---------------------HRHWFEMQSLSL 148
+I A + QLK WAEV+K + R WF + +
Sbjct: 78 VIVTAPTYRQLKTIYWAEVNKIYNRSKLKQLNLFEINDKIMRINDKDLKREWFALPVTAS 137
Query: 149 HPSGWYA------ELLEQSMGI-------DSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
P G E++EQ M D + I + E+ + + + V
Sbjct: 138 TPEGMQGQHGDKTEVIEQIMKHLGIEEIGDDETIEIVSQILRGEKQIEGLTKEDKEKLLV 197
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
DE+SG + I + + G T+ + ++ N + G+FY+ P + + + +
Sbjct: 198 MVDESSGVKNEIFEVLEG--TDYD---KLVLFGNMTKNTGYFYESVYNPKSKFYKVTMSS 252
Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
+ + YG DS+V R+ + G+ P N+ N I+ A R Y
Sbjct: 253 YNSPFMKKEQIHDLEETYGPDSNVVRVRLKGEAPDGNENSIFSSNKIDSAFQRSLSLSEY 312
Query: 316 APLIMGCDIA-GEGGDKTVVVFRRGNIIEHIFD 347
+ +G D+ G GGD + + ++ N + D
Sbjct: 313 ETIKLGVDVGKGSGGDSSTIYEKKDNRVRKKLD 345
>gi|307308936|ref|ZP_07588619.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
BL225C]
gi|306900570|gb|EFN31183.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
BL225C]
Length = 472
Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 30/296 (10%)
Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
+C + NN + G GKT ++A + W + + + A SE+ +K+
Sbjct: 39 EYCEAFKNNQT-----ITVKGSSGWGKTFISAISLWWSLIVFDPVKVTIFAPSESTIKSG 93
Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS-MGIDSKHYTITC----RTYSE 178
+W E+ Q L + + + EL E S I K TC R S+
Sbjct: 94 IWNEL---------------QVLYSNMAPLFRELFEVSATKIFRKSRGETCWAEYRLVSK 138
Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
+ G H+ + + V DEASG D+I L P ++ SN + +G+F+
Sbjct: 139 DNIAAARGFHSKNNI-VIADEASGIEDVIFTGALLNVLNDGPGAKVVLVSNPDKASGFFF 197
Query: 239 DIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE-ILGQFPQQEVNN 295
+ P +DW + R G E YG + + + G+FP +V+
Sbjct: 198 KTWRDPELSKDWIKVHGSIRDKPNYTPGEEERFARLYGGVTSRDYLTLVEGEFPLSDVDG 257
Query: 296 FIPHNYIEEA-MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
I +++EA +++AI + AP+I G D AG G DK+V+ R N++ +W+
Sbjct: 258 LISREFLDEAVTNKDAIPNPKAPIIWGLDPAGAGKDKSVLAIRHDNVLRGFEEWAG 313
>gi|216906085|ref|YP_002333619.1| terminase [Abalone shriveling syndrome-associated virus]
gi|216263178|gb|ACJ72002.1| terminase [Abalone shriveling syndrome-associated virus]
Length = 507
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 80/313 (25%), Positives = 125/313 (39%), Gaps = 35/313 (11%)
Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCA--ISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
WQLE VD NS+ F CA +S G G GKT L+ + +W PG
Sbjct: 51 WQLEI---VDYIAKFFRKNSDEKHFVCAIAVSGGNGTGKTKLSKALNIWRFCCHPGSRQF 107
Query: 112 CIANSETQLK----NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
+ NSE Q K L +SK LS + ++S + + S A+ E D
Sbjct: 108 ILTNSERQTKRTGFTMLVRRISKLLSCIA-----ALESSAYYYSPAVADKPEVRTN-DMW 161
Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVF-NDEASGTPDIINKSILGFFTELNPNRFWIM 226
T ++ +E G H H M F DE++ D + +++ +T+
Sbjct: 162 DVTYLLQSSTEA---ALSGLH--HPMMTFSFDESTYFNDHVWQALENMWTQ--GQVLCFC 214
Query: 227 TSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI-------DSGFHEGIISRYGLDSD 278
T N N +F +FN L + TR V + + I YG
Sbjct: 215 TGNPSHDNNNYFARLFNKSLHKKDSLWL-TRCVSLLELPLKYRNDARARYIEEHYGKTHP 273
Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDI--AGEGGDKTVVV 335
+LGQFP++ N I EAM RE ++ ++ P+IMG D+ + G + +
Sbjct: 274 RYIASVLGQFPKKNTCNPFDITAISEAMEREVREEFIHHPVIMGIDVSISANNGSASAIC 333
Query: 336 FRRGNIIEHIFDW 348
R G + + ++
Sbjct: 334 VREGTAVRVLREY 346
>gi|161789175|ref|YP_001595730.1| PacB [Vibrio sp. 0908]
gi|161761461|gb|ABX77106.1| PacB [Vibrio sp. 0908]
Length = 572
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 65/290 (22%), Positives = 113/290 (38%), Gaps = 27/290 (9%)
Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
+P Q+E + A+ P + ++++G G GK+ L A + L I T P
Sbjct: 44 EPSFQQIEVINAL-----------TPVGARVSVASGHGTGKSHLTAALCLHFIITHPESL 92
Query: 110 IICIANSETQLKNTLWAEVSK-WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
+ ANS Q+ N +++ + + W+ + + W E Q + +YA+ + I K
Sbjct: 93 CMLTANSLDQVTNVVFSYIKRCWVKICQRQPWLE-QYFVITAKSFYAKGYKGVWQIFGK- 150
Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
T S+ + G H M V DEASG D + + G TE N N+ +++
Sbjct: 151 ------TCSKGNEEGLAGQHRRDYMVVV-DEASGVSDRAFEVLRGALTEDN-NKMLLISQ 202
Query: 229 NTRRLNGWFYDIFNI--PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEIL 285
R G F D + +++ ++ F YG S I +L
Sbjct: 203 F-TRPTGHFADSQMELAEQGLYTAITLNSEMSPFVNLKFIREKRIEYGGVTSPEYGIRVL 261
Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVV 334
G P I + +++ + D+A GEG D +V+
Sbjct: 262 GVCPDDASGFLISRSLVDKGFEAVIEFADEWGWVAVADVAGGEGRDSSVL 311
>gi|332974843|gb|EGK11758.1| hypothetical protein HMPREF9373_1714 [Psychrobacter sp. 1501(2011)]
Length = 520
Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats.
Identities = 58/292 (19%), Positives = 110/292 (37%), Gaps = 30/292 (10%)
Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
WQ E + + + ++++G G GK+ + LW + P ++
Sbjct: 41 TWQQELL----------FKSIVVPGSRTSVASGHGTGKSRSAGIIALWHLLFYPESVMLF 90
Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK--HYT 170
A QL+ +W E++ L L + + Y +L + + I +
Sbjct: 91 TAPQIGQLRTVVWKEINICLQRLRNNKALGWLAD-------YVVVLAEKIYIKGFKDTWF 143
Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
+ +T + +P G H H M V+ DEA G D + + +G T N ++TS
Sbjct: 144 VFAKTAPKHQPTNIAGQHGDHYM-VWADEACGIDDAVMEVAIGALTHE--NNRAVLTSQP 200
Query: 231 RRLNGWFYDIFNIPLE----DWKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEIL 285
+ G+FYD + W + + + + +YG +S I I
Sbjct: 201 AKNTGFFYDTHHKLSHYNGGKWIALEFNGEMSPIVSKEKLIEALYQYGSRNSPGYLIRIR 260
Query: 286 GQFPQQEVNNFIPHNYIE--EAMSREAIDDLYAPLIMGCDIAG-EGGDKTVV 334
G+FP+ + + E +A + +I+ D+ G G D +V+
Sbjct: 261 GKFPELKGEYLLTRTDYENMKAHPCVIKEGDKWGIIVTVDVGGDVGRDSSVI 312
>gi|148653111|ref|YP_001280204.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
gi|148572195|gb|ABQ94254.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
Length = 520
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 57/292 (19%), Positives = 110/292 (37%), Gaps = 30/292 (10%)
Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
WQ E + + + ++++G G GK+ + LW + P ++
Sbjct: 41 TWQQELL----------FKSIVVPGSRTSVASGHGTGKSRSAGIIALWHLLFYPESVMLF 90
Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK--HYT 170
A QL+ +W E++ L L + + Y +L + + I +
Sbjct: 91 TAPQIGQLRTVVWKEINICLQRLRNNKALGWLAD-------YVVVLAEKIYIKGFKDTWF 143
Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
+ +T + +P G H H M V+ DEA G D + + +G T N ++TS
Sbjct: 144 VFAKTAPKHQPTNIAGQHGDHYM-VWADEACGIDDAVMEVAIGALTHE--NNRAVLTSQP 200
Query: 231 RRLNGWFYDIFNIPLE----DWKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEIL 285
+ G+FYD + W + + + + +YG +S I I
Sbjct: 201 AKNTGFFYDTHHKLSHHNGGKWTALEFNGEMSPIVSKDKLIEALYQYGSRNSPGYLIRIR 260
Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMGCDIAG-EGGDKTVV 334
G+FP+ + + E + + + +I+ D+ G G D +V+
Sbjct: 261 GKFPELKGEYLLTRTDYENMKQQPCVIEEGDKWGIIVAVDVGGDVGRDSSVI 312
>gi|315649222|ref|ZP_07902312.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
gi|315275441|gb|EFU38799.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
Length = 189
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 31/202 (15%)
Query: 38 WGIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
W E P WQ + M V + ++ +G+G+GKT L A
Sbjct: 16 WDDPVAFAEDMMGFDPDDWQCDVMMDV------------TQFPRTSVRSGQGVGKTGLEA 63
Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
+++W + RP ++C A ++ QL + LW EVSKWL ++ + ++ G
Sbjct: 64 ALVIWFLCCRPNPKVVCTAPTKQQLHDVLWTEVSKWLENSMVKNLLKWTKTKVYMIG--- 120
Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
+ + T RT +P+ G H + M DEASG D I ++ILG
Sbjct: 121 ---------HEQRWFATARTA--NKPENMQGFHEDY-MLFIVDEASGVSDPIMEAILGTL 168
Query: 216 TELNPNRFWIMTSNTRRLNGWF 237
+ +M N R +G F
Sbjct: 169 S--GAENKLLMCGNPTRTSGVF 188
>gi|320103661|ref|YP_004179252.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
gi|319750943|gb|ADV62703.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
Length = 553
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 64/295 (21%), Positives = 104/295 (35%), Gaps = 32/295 (10%)
Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
++ G +GK+ L A + LW + T PG ++ A S+ L L+ E+ K L+
Sbjct: 62 RARSVVVATGNAVGKSYLAAGLTLWWLYTHPGSLVVATAPSQGLLGTVLFRELQKALA-A 120
Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
R + + + L G C + + G H+ M V
Sbjct: 121 SRRRGLGLPGMVVGSDRGTPFSLRVGPGRRLAAEGWGCLGIATRGVERLAGRHHADLMVV 180
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK------ 249
DEASG + T LNP R + N F+ + L +
Sbjct: 181 V-DEASGVQPEAWE----ALTSLNP-RKLFVCGNPLTPGTVFHKLHQRGLTEASDPSIPD 234
Query: 250 -----RYQIDTRTVEGID----------SGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
I + I+ GF ++G S + + G FP V+
Sbjct: 235 HARGVALTIPSTASPDINLERSPRGLADRGFIREAERQWGRGSPLWLSHVEGVFPTVAVH 294
Query: 295 NFIPHNYIEEAMSREAIDDLYAP---LIMGCDI-AGEGGDKTVVVFRRGNIIEHI 345
I ++++A S E P ++GCD+ AG G D+T +V R I +
Sbjct: 295 ALIEPGWLDQAASLERSQTYENPPGQPVLGCDLAAGVGADRTAIVVRDEGGIREL 349
>gi|134287454|ref|YP_001109621.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
gi|134131876|gb|ABO60570.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
Length = 509
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 53/282 (18%), Positives = 110/282 (39%), Gaps = 19/282 (6%)
Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
++A H ++ + + ++S+G G GKT+ A + LW + + I A +
Sbjct: 34 LKAPTHHQIQMFDSVSKQGSRTSVSSGHGTGKTSGFAIIALWHLLCYYLSNTILTAPKIS 93
Query: 119 QLKNTLWAEVSKWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
+ + +W E + + + + + + + Y + ++ + ++
Sbjct: 94 TVSDGVWKEFADLSTKISNGPQSWIWEYFVIESERVYVRGYKL-------NWFVIAKSAP 146
Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
P+ G H + DEASG PD I G T+ NR + + R +G+F
Sbjct: 147 RGSPENLAGAHRD-WLLWLADEASGIPDDNFGVITGSLTDE-RNRMCLASQ-PTRSSGFF 203
Query: 238 YDIFNIPLED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
Y+ + W ++ + + F +Y + +I++ G+FP+
Sbjct: 204 YETHHALSRAEGGPWNNLVFNSEFSPIVSAKFIAEKKLQYTEE--EYQIKVQGRFPENSS 261
Query: 294 NNFIPHNYIEEAMSREAI-DDLYAPLIMGCDIAGEG-GDKTV 333
+ IE + R I D + ++ D+ G G D+TV
Sbjct: 262 KYLVGPQAIEACVGRTVIKPDEHWGWLLPVDVGGGGWRDETV 303
>gi|299769795|ref|YP_003731821.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1]
gi|298699883|gb|ADI90448.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1]
Length = 668
Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 94/259 (36%), Gaps = 18/259 (6%)
Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQ 144
GKT + LW + ++ A QLK +W E+S L+ L +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
+ Y + ++ + + +T + +P G H + M V+ DEASG
Sbjct: 268 YVGYQSELVYIKGYKEK-------WYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
D + G T + +MTS R G FY+ + W +
Sbjct: 320 DAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377
Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PL 318
+ E +YG D +I +LG+FP I EE +I D +
Sbjct: 378 VSKQSLEEQRQKYGSRDDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437
Query: 319 IMGCDIAGE-GGDKTVVVF 336
I+ D+ G G D +V+V
Sbjct: 438 IITVDVGGGVGRDDSVIVI 456
>gi|228924410|ref|ZP_04087639.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228835241|gb|EEM80653.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 293
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
+ N R +G FYD N + +K +++ + E + +YG SDV R+ +
Sbjct: 2 FLCGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRV 61
Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344
LG+FP+ E + FIP +E+A S + L +G D+A G D+TV+ R GN +
Sbjct: 62 LGEFPKAEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVFK 120
Query: 345 IFDWSAKLIQET 356
+ + + ET
Sbjct: 121 LLNHYKQDTMET 132
>gi|323516996|gb|ADX91377.1| hypothetical protein ABTW07_0941 [Acinetobacter baumannii
TCDC-AB0715]
gi|323518424|gb|ADX92805.1| hypothetical protein ABTW07_2381 [Acinetobacter baumannii
TCDC-AB0715]
Length = 663
Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats.
Identities = 57/259 (22%), Positives = 94/259 (36%), Gaps = 18/259 (6%)
Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQ 144
GKT + LW + ++ A QLK +W E+S L+ L +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
+ Y + ++ + + +T + +P G H + M V+ DEASG
Sbjct: 268 YVGYQSELVYIKGYKEK-------WYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
D + G T + +MTS R G FY+ + W +
Sbjct: 320 DAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377
Query: 261 IDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PL 318
+ E +YG D +I +LG+FP I EE +I D +
Sbjct: 378 VSKQSLEEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437
Query: 319 IMGCDIAGE-GGDKTVVVF 336
++ D+ G G D +V+V
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456
>gi|213156231|ref|YP_002318651.1| phage terminase [Acinetobacter baumannii AB0057]
gi|301346399|ref|ZP_07227140.1| phage terminase [Acinetobacter baumannii AB056]
gi|301594275|ref|ZP_07239283.1| phage terminase [Acinetobacter baumannii AB059]
gi|213055391|gb|ACJ40293.1| phage terminase [Acinetobacter baumannii AB0057]
Length = 663
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 18/259 (6%)
Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQ 144
GKT + LW + ++ A QLK +W E+S L+ L +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
+ Y + ++ + + +T + +P G H + M V+ DEASG
Sbjct: 268 YVGYQSELVYIKGYKEK-------WYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
D + G T + +MTS R G FY+ + W +
Sbjct: 320 DAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377
Query: 261 IDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PL 318
+ + +YG D +I +LG+FP I EE +I D +
Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437
Query: 319 IMGCDIAGE-GGDKTVVVF 336
++ D+ G G D +V+V
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456
>gi|257459276|ref|ZP_05624390.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
gi|257443289|gb|EEV18418.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
Length = 431
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 69/289 (23%), Positives = 112/289 (38%), Gaps = 35/289 (12%)
Query: 80 CAISAGR--GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
C I GR G K T NA + WL+ G I+ + LK L LP
Sbjct: 26 CTIEKGRRFGFTKGTANACIE-WLL---EGQKILWVDTIAANLKRYFERYFLPELRQLPK 81
Query: 138 RHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
W + Q L G Y + S ERP+ G + +
Sbjct: 82 ELWNWNAQDKQLKICGGYLDF------------------RSAERPENIEGF--GYDTVIL 121
Query: 197 NDEA--SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED---WKRY 251
N+ P + + +I + NPN + + N F+D+ + + W+ +
Sbjct: 122 NEAGIILKDPYLWDNAISPMLLD-NPNSRAFIGGVPKGKNK-FFDLAQRGMRNEKGWRNF 179
Query: 252 QIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
Q + + + +++ G DSDVAR EI G+F N+ IE A ++
Sbjct: 180 QFSSYDNPLLQKEEIDRLVAELGGADSDVARQEIFGEFLDTTSNSVFSLAAIEAAFRKQR 239
Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
D AP+I D+A EG D++V+ R+G+ +E + + E +E
Sbjct: 240 YFDAGAPVIWALDVAREGDDESVLCKRQGDSVEPLKPYRIASTSELARE 288
>gi|332852816|ref|ZP_08434408.1| intein splicing region-containing protein [Acinetobacter baumannii
6013150]
gi|332871045|ref|ZP_08439658.1| intein splicing region-containing protein [Acinetobacter baumannii
6013113]
gi|332729027|gb|EGJ60377.1| intein splicing region-containing protein [Acinetobacter baumannii
6013150]
gi|332731805|gb|EGJ63085.1| intein splicing region-containing protein [Acinetobacter baumannii
6013113]
Length = 663
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 18/259 (6%)
Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQ 144
GKT + LW + ++ A QLK +W E+S L+ L +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
+ Y + ++ + + +T + +P G H + M V+ DEASG
Sbjct: 268 YVGYQSELVYIKGYKEK-------WYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
D + G T + +MTS R G FY+ + W +
Sbjct: 320 DAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377
Query: 261 IDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PL 318
+ + +YG D +I +LG+FP I EE +I D +
Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437
Query: 319 IMGCDIAGE-GGDKTVVVF 336
++ D+ G G D +V+V
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456
>gi|184158505|ref|YP_001846844.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
gi|183210099|gb|ACC57497.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
Length = 663
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 18/259 (6%)
Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQ 144
GKT + LW + ++ A QLK +W E+S L+ L +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
+ Y + ++ + + +T + +P G H + M V+ DEASG
Sbjct: 268 YVGYQSELVYIKGYKEK-------WYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
D + G T + +MTS R G FY+ + W +
Sbjct: 320 DAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377
Query: 261 IDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PL 318
+ + +YG D +I +LG+FP I EE +I D +
Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437
Query: 319 IMGCDIAGE-GGDKTVVVF 336
++ D+ G G D +V+V
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456
>gi|260551382|ref|ZP_05825582.1| phage terminase [Acinetobacter sp. RUH2624]
gi|260405545|gb|EEW99037.1| phage terminase [Acinetobacter sp. RUH2624]
Length = 663
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 18/259 (6%)
Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQ 144
GKT + LW + ++ A QLK +W E+S L+ L +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
+ Y + ++ + + +T + +P G H + M V+ DEASG
Sbjct: 268 YVGYQSELVYIKGYKEK-------WYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
D + G T + +MTS R G FY+ + W +
Sbjct: 320 DAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377
Query: 261 IDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PL 318
+ + +YG D +I +LG+FP I EE +I D +
Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437
Query: 319 IMGCDIAGE-GGDKTVVVF 336
++ D+ G G D +V+V
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456
>gi|256392042|ref|YP_003113606.1| hypothetical protein Caci_2856 [Catenulispora acidiphila DSM 44928]
gi|256358268|gb|ACU71765.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928]
Length = 484
Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats.
Identities = 58/313 (18%), Positives = 111/313 (35%), Gaps = 39/313 (12%)
Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
+ + P RW + + ++ S A+ + G GK+ + + + W + T P
Sbjct: 24 YLADPARWVDDKLGEYLWSRQVDIATSVRDQRLTAVQSCHGTGKSFVASRLTAWWLDTHP 83
Query: 107 G--MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
++ A + Q+K LWAE++K + R ++ + W + + G
Sbjct: 84 PGEAFVVTTAPTGDQVKAILWAEINKAFAKAEARG--TPLPGRINETDWKYDKFLVAFGR 141
Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
Y P F G H + + + DEA G + L T ++
Sbjct: 142 KPSDY----------NPHAFQGIHAKYVLVIL-DEACGISKQFWTAALAIATGVHCRILA 190
Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG--------------IDSGFHEGII 270
I N F + W +I R + + +
Sbjct: 191 I--GNPDDPGSHFAQVCKSDR--WNMIKIAARDTPNFTGEEVPDDLADMLVSQAYVLDMA 246
Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI----DDLYAPLIMGCDIAG 326
+G +S + ++ +FP + + + + A +RE + D P+ +G D+ G
Sbjct: 247 EEFGPESPIYLSKVDAEFPSDASDGVVRLSKL-MACTREPVHPYAPDRLVPVELGVDL-G 304
Query: 327 EGGDKTVVVFRRG 339
GGD+T + RRG
Sbjct: 305 AGGDETCIRERRG 317
>gi|154175204|ref|YP_001409090.1| Ppx/GppA family phosphatase [Campylobacter curvus 525.92]
gi|112803006|gb|EAU00350.1| phosphatase, Ppx/GppA family [Campylobacter curvus 525.92]
Length = 433
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 69/318 (21%), Positives = 110/318 (34%), Gaps = 50/318 (15%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--GIGKTTLNAWMMLWLISTRPGMS 109
WQ E I GR G K NA + WLI G
Sbjct: 11 TDWQREVFFKNKAKF-------------TTIEKGRRSGFTKGMANACIE-WLI---EGKK 53
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKH 168
I+ + L+ L LP W F Q L Y ++
Sbjct: 54 ILWVDTVTANLQRYFERYFVPELKQLPADMWKFHAQDKKLTVGEGYLDM----------- 102
Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT---PDIINKSILGFFTELNPNRFWI 225
S ERP+ G V +EA + + +I + PN
Sbjct: 103 -------RSAERPENIEGFGYD---VVILNEAGIILKNSYLWDNAIRPMLLDY-PNSRAF 151
Query: 226 MTSNTRRLNGWFYDIFNIPL---EDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVAR 281
+ + N F+D+ + + +DW +QI + + + +I+ G DSDV +
Sbjct: 152 IGGVPKGKN-RFFDLASRGMRNEKDWVNFQISSFENPLLRKEEIDELIAELGGVDSDVVK 210
Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
EI G+F N P + IE A + + A I G D+A +G D++V+ R G
Sbjct: 211 QEIYGEFLDTTTNALFPLSQIEAAFGKVRAYEPNAVQIWGLDVARDGDDESVLCVREGYH 270
Query: 342 IEHIFDWSAKLIQETNQE 359
++++ + E +E
Sbjct: 271 VKNLEGFRIASTTELARE 288
>gi|189460514|ref|ZP_03009299.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
gi|189432758|gb|EDV01743.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
Length = 556
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 64/345 (18%), Positives = 117/345 (33%), Gaps = 69/345 (20%)
Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--------- 106
E + + +S + ++++G GK + A + + P
Sbjct: 57 REALGVTLDKEQQEILSSVQYNRRTSVASGTARGKDFVAACAAICFLYLTPRWRKNSLGE 116
Query: 107 -----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
+ A ++ Q+KN + E+S+ + R + L+ +
Sbjct: 117 IELVENTKVALTAPTDRQVKNIMMPEISRLFNRAKARGVELIGKLNAYD----------- 165
Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
+ ++ + +T E + + G H H M V EA+G D +I G +
Sbjct: 166 IRTNNDEWFLTGFKADEHNHEAWSGFHAVHTMFVVT-EATGIGDDTFAAIEGNL--QGDS 222
Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH--------------- 266
R ++ N + G+ W +Y++++ T I S
Sbjct: 223 RILLVF-NPNKTVGYAAKSQKGDR--WHKYRLNSLTAPNIASKKIIIPGQVDYDWVLDKL 279
Query: 267 EGIISRYGLDS------------------DVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
E + D D+ R ++LG FP+ + + IP ++EEA R
Sbjct: 280 ENWCEKISPDEIISEMDDFEFEGQWYRPEDLFRKKVLGLFPKVDEDTLIPRQWLEEAHER 339
Query: 309 EAIDDLYAPL-----IMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
PL I+G D+AG G D T V RR N +
Sbjct: 340 WKQAKGREPLRADLNILGVDVAGMGRDATCYVLRRDNWVASFDTH 384
>gi|298387330|ref|ZP_06996883.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|298259999|gb|EFI02870.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length = 500
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 64/347 (18%), Positives = 117/347 (33%), Gaps = 69/347 (19%)
Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------ 106
+ + + A V S A+++G GK + A L + P
Sbjct: 18 AFASDVLRANLDEEQKAVLRSVQKNPMTALASGTSRGKDFVAACAALCFMYLTPEWDDDG 77
Query: 107 ----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
I A S+ Q++N + EV + L+ +
Sbjct: 78 NLIRNTKIALSAPSQRQVENIMTPEVRRLFRNAGILP---------------GRLVANDI 122
Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
D + Y +T + + + G H + M V EASG + I +I G N
Sbjct: 123 RTDYEEYFLTGFKADNKNQEVWSGFHAANVMFVIT-EASGVSETIFSAIEGNLQG---NS 178
Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS-----------GFHEGIIS 271
++ N G+ + + ++++D+ + + + E +
Sbjct: 179 RLLLVFNPNITTGYAANAMKSDR--FAKFRLDSLNATNVTAKREIIPGQVNYEWVEDKVK 236
Query: 272 RY-----------GLD-----------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
+ G +D+ RI++ G FP+ + IP+ +IE A R
Sbjct: 237 HWCTPITKEEYNEGEGDFLFENNLYRPNDLFRIKVRGMFPKVAEDVLIPYEWIEIANKRW 296
Query: 310 AIDDLYAP---LIMGCDIAGEGGDKTVVVFRRGNII--EHIFDWSAK 351
+ Y P +G D+AG G D +V R GN + +F + K
Sbjct: 297 QENHPYRPRKSCKLGVDVAGMGRDNSVFCPRYGNYVSQFDVFQSAGK 343
>gi|153806881|ref|ZP_01959549.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
gi|149131558|gb|EDM22764.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
Length = 513
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 54/335 (16%), Positives = 108/335 (32%), Gaps = 64/335 (19%)
Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--------- 106
+ + A + S A+++G GK + A L + P
Sbjct: 27 RDALCARLDREQQAIIESVQHNPMTAVASGTARGKDFVAACASLCFMYLTPRFNEKGVLV 86
Query: 107 -GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
+ A + Q+KN + E+ + + + F L+ + D
Sbjct: 87 GNTKVAMTAPTGRQVKNIMTPEIRRLIRAARTKFPFCCPG----------RLVADDIRTD 136
Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
+ + +T + +++ G H + M V EASG +I+ +I G N +
Sbjct: 137 YEEWFLTGFKADDNATESWSGFHAANTMFVIT-EASGISEIVYNAIEGNLQG---NSRML 192
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE------------------ 267
+ N G+ + ++++ + E +
Sbjct: 193 IVFNPNITTGYAARAMKSDR--FAKFRLSSLNAENVVKKQIVIPGQVDYEWVKDKVINWC 250
Query: 268 ---------------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
+ +D+ R+++LG FP+ + IP+ +IE A
Sbjct: 251 SPIQQTDFNEGEGDFNWEGKLYRPNDLFRVKVLGMFPKVSEDVLIPYEWIEIANRNWQEL 310
Query: 313 D-----LYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
+G D+AG G D +V+ R GN +
Sbjct: 311 QASGFIPAKSCKLGVDVAGMGRDNSVLCPRYGNYV 345
>gi|111222161|ref|YP_712955.1| hypothetical protein FRAAL2741 [Frankia alni ACN14a]
gi|111149693|emb|CAJ61385.1| hypothetical protein FRAAL2741 [Frankia alni ACN14a]
Length = 535
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 64/327 (19%), Positives = 113/327 (34%), Gaps = 48/327 (14%)
Query: 47 HFSQPHRWQLEFMEAVDV-HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
+ +P RW + + V + + N+ K A+ + GK+ + A + + T
Sbjct: 52 YRDEPVRWARDRLGGVHLWSKQQEIINALRVHRKVAVPSCHDAGKSFVAAAAVAHWLDTH 111
Query: 106 PG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
P I A + Q++ LW E+ + + + + +
Sbjct: 112 PPGSAFAITTAPTFPQVRAILWREIRRLSRL---------------MNPPLGRVNQTEWL 156
Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
ID + + F G H + + V DEA G P + + T N N
Sbjct: 157 IDDDLVAFGRKPA-DHDEGGFQGIHAQYPLVVL-DEAGGIPQQLWIAADSIAT--NENAR 212
Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE--------------GIDSGFHEGI 269
+ N +F + +P W I + + E
Sbjct: 213 ILAIGNPDDPTSYFAQVCELP--SWHVITIPAAETPAFTGEQIPDDLRQALLSRAWAEEK 270
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-----PLIMGCDI 324
+G D+ V ++L QFP+ I + A R D+ + P+ +G D+
Sbjct: 271 RREWGEDNPVYISKVLAQFPKDVAWKVI--KASDVAKRRIGRDEPWPASKLRPVCLGVDV 328
Query: 325 AGEGGDKTVVVFRRGNIIEHIFDWSAK 351
GEG D TVV RRG ++ +W A+
Sbjct: 329 -GEGRDWTVVRERRG--VQAGREWQAR 352
>gi|282880015|ref|ZP_06288737.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
5C-B1]
gi|281306129|gb|EFA98167.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
5C-B1]
Length = 459
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 55/314 (17%), Positives = 107/314 (34%), Gaps = 69/314 (21%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRP----------GMSIICIANSETQLKNTLWAEVS 129
A+++G GK + A + + P I A + Q N + EV+
Sbjct: 2 VAVASGTSRGKDFVAACAAMCFMYLTPRWNINHRLIQNTKIAMTAPTGRQCINIMIPEVA 61
Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
+ +L + ++ + +T S++ + + G H
Sbjct: 62 RLFRNASVLP---------------GRMLSDGIRTNNAEWFLTAFKASDDNTEAWSGFHA 106
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
+ M V EASG + +I G N ++ N G+ +K
Sbjct: 107 VNTMFVVT-EASGVSETTFNAIEGNLQG---NSRLLLVFNPNVTTGYAAKAMKSSR--FK 160
Query: 250 RYQIDTRTVEGI-----------DSGFHEGIISRY-----------GLD----------- 276
++++++ E + D + + + + G
Sbjct: 161 KFRLNSLNAENVIKKKNVIPGQVDYEWVKDKVHNWCELIQKEDFNNGEGDFMFEDSFYRP 220
Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL-----IMGCDIAGEGGDK 331
+D+ RI++LG FP+ + IP ++E A R + + +G D+AG G D
Sbjct: 221 NDLFRIKVLGLFPKASEDTLIPFEWLELAHDRWKKLNAEDFVPRKYARVGIDVAGMGRDS 280
Query: 332 TVVVFRRGNIIEHI 345
+ V R GN + I
Sbjct: 281 SCFVLRYGNYVPEI 294
>gi|226227228|ref|YP_002761334.1| hypothetical protein GAU_1822 [Gemmatimonas aurantiaca T-27]
gi|226090419|dbj|BAH38864.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 549
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 57/287 (19%), Positives = 96/287 (33%), Gaps = 37/287 (12%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-WLSMLPHR 138
A+++G G GKT L A ++LW I+ P +A Q + +W EV++ W
Sbjct: 70 VAVASGTGTGKTFLEAVLLLWWIAVEPDSIATTVATKADQQEKGIWREVARHWPRFQACF 129
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT-YSEERPDTFVGPHNTHGMAVFN 197
E+ +L + W + + IT EE G H + +
Sbjct: 130 PEAELTTLRIRMEPWRGDAWGA--------WGITAAPKAGEESSSAVQGLHAK-RLLILV 180
Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNT---RRLNGWFYDIFNIPLEDWKRYQID 254
DE G P + +++ T N G F + + +I
Sbjct: 181 DETPGVPQPVMTALVNTATGEENVIAAF--GNPDYQADPLGQFAET-----KRVTAIRIS 233
Query: 255 TRTVEGI-----------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
+ +YG++S V + + G P+Q + I +
Sbjct: 234 ALDHPNVVLGVERIPGAATRLSIATREDKYGVESGVYQSRVRGIAPEQSASALIHLAWCV 293
Query: 304 EAMSREAIDDLYA----PLIMGCDIAG-EGGDKTVVVFRRGNIIEHI 345
A R A P +G D+A E GDK V +G + +
Sbjct: 294 AAADRAESVQHAALALGPKALGVDVAQSENGDKAAVAMGQGARLLSV 340
>gi|315122636|ref|YP_004063125.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496038|gb|ADR52637.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 301
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 12/166 (7%)
Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQ----LEFME 60
I D L Q + + L+F ++ R WG +G PL + P WQ LE E
Sbjct: 9 IEYDTALLQNVLSPAIAGN-PLAFTKYMYR---WGEEGTPLANCKGPRAWQTEVFLELAE 64
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
++ + + +FK AI++ RGIGKT L AW+ W +STR G +++ ANS+ Q
Sbjct: 65 FIEKNKEAKRLGKPLQVFKLAIASARGIGKTALVAWITYWFLSTRIGCTVVISANSDDQC 124
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQS----LSLHPSGWYAELLEQSM 162
K T +AE+ +W S+ + H+FE L+ S W AE + +++
Sbjct: 125 KTTSFAEIRRWHSLAKNAHFFEANIAEALLAGGCSPWQAEPVAKTL 170
>gi|294789575|ref|ZP_06754810.1| putative terminase B protein [Simonsiella muelleri ATCC 29453]
gi|294482512|gb|EFG30204.1| putative terminase B protein [Simonsiella muelleri ATCC 29453]
Length = 516
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 49/274 (17%), Positives = 104/274 (37%), Gaps = 26/274 (9%)
Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRP----------GMSIICIANSETQLKNTLWAE 127
K ++ +G G GKT + LW + P G + A + Q+ + +W E
Sbjct: 48 AKVSVVSGTGTGKTMSFGRIALWHLLCFPVAKYDGKIEIGSNTYIGAPAIKQVGDGVWKE 107
Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
++ + + + + +++ + IT + + + G
Sbjct: 108 ITDAVQAMRANRATAWLAEYIVVQAERVYIIDYKA-----TWFITKFAMQQGQSVSIAGK 162
Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI---- 243
H + + + DEA+G D + I G T+ ++ S + G+FY+ +
Sbjct: 163 HRFYQLIII-DEAAGVSDEHYEVINGTQTQGGNRT--LLASQGVKQGGFFYETHHKLNKE 219
Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
+W + + + + E + + G ++ R+ +LG+F + E N + I
Sbjct: 220 NGGNWTALCFSSENSPFVTTEWLENVALQAGGKNTTEYRVRVLGKFAENEHENLLTRAQI 279
Query: 303 EEAMSREAIDDLYAP--LIMGCDI-AGEGGDKTV 333
E + I + P ++ D+ AGE D +V
Sbjct: 280 EPRIDTLPIIEKGEPFGWLLLVDVGAGEYRDDSV 313
>gi|283956317|ref|ZP_06373797.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
1336]
gi|283792037|gb|EFC30826.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
1336]
Length = 430
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 63/301 (20%), Positives = 114/301 (37%), Gaps = 37/301 (12%)
Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
++ NP ++ GR +G T +A ++ + G +++ + + L+N +
Sbjct: 17 FDDKNPRFI--TVAKGRRLGFTRGSAKFVIENLLL--GQNVLWVDTIQANLQNYYELYFT 72
Query: 130 KWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
L LP + + +Q L +G S ER + G
Sbjct: 73 PELKNLPKDFYSWSVQDKKLIING------------------AVLHMRSAERSENIEGF- 113
Query: 189 NTHGMAVFNDEA-----SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
+ + + N+ S + +I + NP I+ + N FY++
Sbjct: 114 -GYDLVILNEAGIILKGSKGEYLWYNAIRPMLLD-NPKSRAIIGGVPKGKN-LFYELCRK 170
Query: 244 PLED--WKRYQIDTRTVEGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHN 300
L D WK +Q + + + +I G DS+V + EI G+F
Sbjct: 171 ELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEDSEVVKQEIYGEFIDSSSAELFALT 230
Query: 301 YIEEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
IE AMS+ + I+ + I G D+A G DK+V+ R+G I++ I +S E
Sbjct: 231 EIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSVLAKRKGFIVDEIKKYSQLGTMELAN 290
Query: 359 E 359
Sbjct: 291 R 291
>gi|315929403|gb|EFV08605.1| phosphatase, Ppx/GppA family [Campylobacter jejuni subsp. jejuni
305]
Length = 430
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/301 (20%), Positives = 113/301 (37%), Gaps = 37/301 (12%)
Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
++ NP ++ GR +G T +A ++ + G +++ + + L+N +
Sbjct: 17 FDDKNPRFI--TVAKGRRLGFTRGSAKFVIENLLL--GQNVLWVDTIQANLQNYYELYFT 72
Query: 130 KWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
L LP + + +Q L +G S ER + G
Sbjct: 73 PELKNLPKDFYSWSVQDKKLIING------------------AVLHMRSAERSENIEGF- 113
Query: 189 NTHGMAVFNDEA-----SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
+ + + N+ S + +I + NP I+ + N FY++
Sbjct: 114 -GYDLVILNEAGIILKGSKGEYLWYNAIRPMLLD-NPKSRAIIGGVPKGKN-LFYELCRK 170
Query: 244 PLED--WKRYQIDTRTVEGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHN 300
L D WK +Q + + + +I G S+V + EI G+F +
Sbjct: 171 ELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSSAELFSLS 230
Query: 301 YIEEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
IE AMS+ + I+ + I G D+A G DK+ + R+G +I I +S E
Sbjct: 231 EIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQLGTIELAN 290
Query: 359 E 359
+
Sbjct: 291 K 291
>gi|57237579|ref|YP_178593.1| terminase B protein, putative [Campylobacter jejuni RM1221]
gi|57166383|gb|AAW35162.1| terminase B protein, putative [Campylobacter jejuni RM1221]
Length = 430
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/301 (20%), Positives = 113/301 (37%), Gaps = 37/301 (12%)
Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
++ NP ++ GR +G T +A ++ + G +++ + + L+N +
Sbjct: 17 FDDKNPRFI--TVAKGRRLGFTRGSAKFVIENLLL--GQNVLWVDTIQANLQNYYELYFT 72
Query: 130 KWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
L LP + + +Q L +G S ER + G
Sbjct: 73 PELKNLPKDFYSWSVQDKKLIING------------------AVLHMRSAERSENIEGF- 113
Query: 189 NTHGMAVFNDEA-----SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
+ + + N+ S + +I + NP I+ + N FY++
Sbjct: 114 -GYDLVILNEAGIILKGSKGEYLWYNAIRPMLLD-NPKSRAIIGGVPKGKN-LFYELCRK 170
Query: 244 PLED--WKRYQIDTRTVEGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHN 300
L D WK +Q + + + +I G S+V + EI G+F +
Sbjct: 171 ELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSSAELFSLS 230
Query: 301 YIEEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
IE AMS+ + I+ + I G D+A G DK+ + R+G +I I +S E
Sbjct: 231 EIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQLGTIELAN 290
Query: 359 E 359
+
Sbjct: 291 K 291
>gi|153951273|ref|YP_001397540.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|153951467|ref|YP_001398214.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938719|gb|ABS43460.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938913|gb|ABS43654.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 430
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 56/265 (21%), Positives = 96/265 (36%), Gaps = 33/265 (12%)
Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGI 164
G +++ + + L+N + L LP + + +Q L +G
Sbjct: 49 EGKNVLWVDTIQANLQNYYELYFTPELKNLPKDFYSWSVQDKKLIING------------ 96
Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-----IINKSILGFFTELN 219
S ER + G + + + N+ D + SI + N
Sbjct: 97 ------AVLHMRSAERSENIEGF--AYDLVILNEAGIILKDSKGGYLWYNSIRPMLLD-N 147
Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISR-YGLD 276
P I+ + N FY++ L D WK +Q + + + +I G
Sbjct: 148 PKSRAIIGGVPKGKN-LFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGES 206
Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMGCDIAGEGGDKTVV 334
SDV R EI G+F + IE AMS+ + I G D+A G DK+V+
Sbjct: 207 SDVVRQEIYGEFIDSSSAELFSLSGIENAMSKNSFSTQKMQGENIWGLDVARYGDDKSVL 266
Query: 335 VFRRGNIIEHIFDWSAKLIQETNQE 359
R+G +I+ + +S E +
Sbjct: 267 AKRKGFVIDELKKYSQLGTIELANK 291
>gi|159897183|ref|YP_001543430.1| hypothetical protein Haur_0654 [Herpetosiphon aurantiacus ATCC
23779]
gi|159890222|gb|ABX03302.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 472
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 56/349 (16%), Positives = 99/349 (28%), Gaps = 63/349 (18%)
Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKTTLNAWMMLWLIS 103
L + P + E + V + S T ++ + A +GKT L ++ W
Sbjct: 2 LPYAHDPVAYAREVLGEVWWTKQELIARSLLTPPYRTLVKACHKVGKTHLGGGLVNWWYD 61
Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
+ ++ A ++ Q+++ LW EV A
Sbjct: 62 SFDPGLVLTTAPTDRQVRDLLWKEVRMQRR-------------------GRAGFTGPKSP 102
Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
++ + D+F G H+ H DEA G + ++ F E
Sbjct: 103 RLESTPDHFAHGFTAKDGDSFQGHHSPH-TLFIFDEAVGVASVFWETAESMFNEGGA--- 158
Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG----------------------- 260
W+ N + Y W +
Sbjct: 159 WLAIFNPTDTSSQAY--AEELSGGWHVISMSVLEHPNILAELQGLPPPFPSAIRLSRVDT 216
Query: 261 --------IDSGFHEG-----IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
+ + + +A +LG++P Q NN + A S
Sbjct: 217 LLKKWCRALSPEEPKRATDIHWRDAWYRPGPIAEARLLGRWPSQATNNVWSDGAFQVAES 276
Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
+ P +GCD+A G D T + RRG + + ET
Sbjct: 277 L-LLPASDEPCELGCDVARYGDDFTEIHVRRGGHSLYHEAANGWSTVET 324
>gi|226940459|ref|YP_002795533.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715386|gb|ACO74524.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 272
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
W QID+RTVEG + YG +SD ++ + G FP FI
Sbjct: 5 KCGRRFRHRWVARQIDSRTVEGTNKEQIAKWAEDYGEESDFFKVRVRGMFPSMSARQFIS 64
Query: 299 HNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+ A R + YAP I+ D A EG D+ V+ R+G + +
Sbjct: 65 ETDVSAAYGRALRPEQYQYAPKILTVDPAWEGDDEFVIGLRQGLSFRVLHTMAKND 120
>gi|225155389|ref|ZP_03723881.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
gi|224803845|gb|EEG22076.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
Length = 479
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 59/313 (18%), Positives = 115/313 (36%), Gaps = 35/313 (11%)
Query: 42 GKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT-LNAWMM 98
G P H + P + + ++ + + S + + G GKT+ + +
Sbjct: 12 GTPAPHAEKLNPITFAVAVLKLRIYSWQAKIMASVWSGKPTVAATPNGAGKTSVIIVALA 71
Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
L L+ PG +++ + + + + ++A ++ + ++ ++
Sbjct: 72 LTLLHEFPGATVVLTSATYRAVCDQIFASLAVHQAKFSA---WKWNDTEIN--------- 119
Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFT 216
D + I ++ +R F G H + + DEA D I +
Sbjct: 120 ------DGQGGRII--GFATDRGGRFEGFHAYPGRPLLIILDEAKSIADDIFVAA----- 166
Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276
+ + S+ L G F+D F+ + ++Q I F E + ++YG D
Sbjct: 167 DRCQPTMLLYISSWGGLFGRFHDAFSQDR--FAQFQAGIADCPHITPEFIEAMRAQYGED 224
Query: 277 SDVARIEILGQFPQQEVNNF-IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
SD+ R ILGQ P+ F +P E S + + CD A D+ V+
Sbjct: 225 SDIYRSMILGQRPKGNETGFVVPFVDYERCESNPPVWQEGTKQVF-CDFAET-SDECVIA 282
Query: 336 FRRGNIIEHIFDW 348
R GN + + W
Sbjct: 283 KRDGNRLSIVDAW 295
>gi|226940437|ref|YP_002795511.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715364|gb|ACO74502.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 133
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
+ AN++TQL+ EV KW + HWF+ QS S+ +K +
Sbjct: 1 MITANTDTQLRTKTSPEVGKWQRLSITSHWFDPQSASI----------AARDKEHAKTWR 50
Query: 171 ITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
+SE + F G HN + + DEAS D + + G T+ WI N
Sbjct: 51 ADFVPWSEHNTEAFAGLHNKGKRIVLIFDEASAIADKVWEVAEGALTDEETEIIWIAFGN 110
Query: 230 TRRLNG 235
R G
Sbjct: 111 PTRNIG 116
>gi|168704975|ref|ZP_02737252.1| hypothetical protein GobsU_35915 [Gemmata obscuriglobus UQM 2246]
Length = 519
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/356 (14%), Positives = 103/356 (28%), Gaps = 68/356 (19%)
Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKTTLNAWMMLWLISTR 105
+ + P + + ++ + + ++ + A +GK+ L ++ W TR
Sbjct: 30 YRTDPAGYARDILKVKWWAKQVEIAEALCKPPYRVLVKASHSVGKSHLAGGLVNWWYDTR 89
Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
+ A ++ Q+K+ LW EV + P +M L P+ +
Sbjct: 90 FPGVCLTTAPTDRQVKDVLWKEVRRQRRKRPGFVGPKMPRLESDPTHF------------ 137
Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
++ +F G H + DEA G ++ W+
Sbjct: 138 -------AHGFTARDATSFQGQHEASILL-IFDEAVGIDGDFWEAAESMCQGAEYG--WL 187
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG---------------FHEGII 270
N Y + W I I + + +
Sbjct: 188 AIFNPTDTTSRAY-LEEQAGSRWTVIDIPATEHPNIAAELVARPPEYPSAVRLNWLRDRL 246
Query: 271 SRYGL------------------DSDVAR-------IEILGQFPQQEVNNFIPHNYIEEA 305
++ S +L ++P + + +
Sbjct: 247 EQWAERIEPGDATPTDIQFPNPDGSPQWWRPGPLADARLLARWPASGCGVWSDPVW--RS 304
Query: 306 MSREAIDDLYAPLI--MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
+ R A D + + +GCD+A G D T + R GN+ H + + T +
Sbjct: 305 VERAAPDPVPERWLPQIGCDVARFGEDWTELHVRCGNVSLHHEAHNGWDTKRTTER 360
>gi|186682890|ref|YP_001866086.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
gi|186465342|gb|ACC81143.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
Length = 543
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/375 (14%), Positives = 112/375 (29%), Gaps = 73/375 (19%)
Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
++ P + + + + + S + A G GK+ + + ++++ +
Sbjct: 28 QYADDPVGFFKNELGIELTNEQTIIAESVRDRPITNVKAAHGTGKSFIASLLVIYFLFC- 86
Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
G I A SE Q+K LWAE+ K + + + L +
Sbjct: 87 VGGVAITTAPSEDQVKWILWAELRKIHGLHKTKLGGRCDIMQL---------------LF 131
Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
S+ T + ++F G H + DEA G I+ + T + +
Sbjct: 132 SETVYAFGITSRDYSENSFQGQHRQKQLL-IEDEADGITPQIDNGFIACLTGSD--NRGL 188
Query: 226 MTSNTRRLNGWFYD--------------IFN----------------------------- 242
N F
Sbjct: 189 RIGNPVDPQSQFAKTCKLDKRCLTVSAFSHPNVSWAYELCADGVYRLKPEVAEHIINEDG 248
Query: 243 --IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
P ++W R I + E + S + ++G++ + + I
Sbjct: 249 EIKPQQEWPPEFPRDRIPGAISIDWIERVRREKFETSAYWKGRVMGEYAEDAADGIILLT 308
Query: 301 YIEEAMSREAIDDLYA-------PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW-SAKL 352
+++A S + Y P +G D+ G+GGD + RG ++ + +
Sbjct: 309 LLKQARSLYDQNPQYWDAIAKRYPWRLGLDV-GDGGDPHALALLRGPVLYEVQIHPTKGD 367
Query: 353 IQETNQEGCPVGSSI 367
+ +T + S I
Sbjct: 368 LLDTERAADIAASQI 382
>gi|282598783|ref|YP_003359102.1| putative large subunit terminase [Clavibacter phage CMP1]
gi|262212571|gb|ACY35907.1| putative large subunit terminase [Clavibacter phage CMP1]
Length = 872
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/287 (19%), Positives = 93/287 (32%), Gaps = 32/287 (11%)
Query: 91 TTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
T L ++ W +S P S++ A Q+ ++ + ++ R Q L
Sbjct: 424 TRLAGDLVTWFVSVFPPEETSVMVSAPIREQIDVMMFRYLRDNYNLAIERE----QPLIG 479
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
+ W Q K + R +F G H+ H +AV DEA G P+ +
Sbjct: 480 EITKW---PYWQVGAPLDKKLVMPKRPADGNLISSFQGIHDGH-VAVVLDEAGGLPEDLY 535
Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE--DWKRYQIDTRTVEGIDSGFH 266
T + I N + N F++ F + W R+ I
Sbjct: 536 IGANAVTTNFHARILAI--GNPDKRNTPFHERFTDTEKFSSWNRFTIGAEDTPNFTGEKI 593
Query: 267 -------EGIISRYGLDS-----------DVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
E + S V ++ G FP+ + F + I S
Sbjct: 594 YEDPAKDEDVKKHLVQVSWAVEMRKSARPSVVAAKVDGNFPESDDTTFFDQSVINRGYST 653
Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
E + MG DI+ +G D++V G I +W+ E
Sbjct: 654 EIEPESTDFKYMGVDISYQGEDQSVAYINHGGQIRIADEWNRFDGAE 700
>gi|284162607|ref|YP_003401230.1| hypothetical protein Arcpr_1511 [Archaeoglobus profundus DSM 5631]
gi|284012604|gb|ADB58557.1| protein of unknown function DUF264 [Archaeoglobus profundus DSM
5631]
Length = 435
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 42/272 (15%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
+ AGR GKT A ++ T PG IA S Q N ++ ++ ++LS
Sbjct: 42 ITVVAGRRFGKTECMAVSAIYYALTNPGSIQFVIAPSYDQ-SNIMFGQIVQFLSKSI--- 97
Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
++ + ++ + + I ++ S +P+ G H H + DE
Sbjct: 98 -LGCMIRRIYKTPFHHIIFKNDSVIHAR---------SASKPEFLRG-HKAHR--IILDE 144
Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI----PLEDWKRYQID 254
A+ PD +I+ I + N + WI N FYD + D+ Y+
Sbjct: 145 AAFIPDDVISNIIEPMLADYNGS--WIKIGTPFGKN-HFYDTYLKGQSPDFPDYSSYRFP 201
Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF----I------PHNYIEE 304
+ I F E YG +S + R E L +F + + F I I+
Sbjct: 202 STVNPHISHEFIEKKKREYGENSIIFRTEYLAEFVEDQNAVFRWADIQKNVDNSIELIDS 261
Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
A +++ ++GCD+A D TV+V
Sbjct: 262 A------ENVSKQYVIGCDLAKY-QDYTVIVV 286
>gi|320091491|gb|ADW08983.1| terminase-like protein [Clavibacter phage CN77]
Length = 414
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 41/214 (19%), Positives = 69/214 (32%), Gaps = 30/214 (14%)
Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
++ G ++ R ++ TF G V DEA G P + T
Sbjct: 12 YKKMDGSGNEAIAFGKRPTDQDIVSTFQGT-RKLRTFVALDEAGGVPPELFTGAEAVMTG 70
Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRTVE---------------- 259
+ I N F+ IF +P +++W + I +
Sbjct: 71 QDSKIVAI--GNPDSRGTEFHRIFTVPALMDEWNTFTISAYDLPTVTGEVVYPDHPEKQE 128
Query: 260 -----GIDSGFHEGIISRY---GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
+ + + G ++LG+FP + N F P I+ I
Sbjct: 129 RMLKGLTSLDWIQHKERVWKVGGKPDGRFLAKVLGEFPGETDNAFFPQEAIDRGND-TTI 187
Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
D +IMG D+A G D +VV +G +
Sbjct: 188 DKPEKGIIMGVDLARMGDDDSVVYTNQGGRVRLF 221
>gi|292670767|ref|ZP_06604193.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292647388|gb|EFF65360.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 442
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 25/249 (10%)
Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
+A Q K W + + + +P R ++ S Y EL + I
Sbjct: 63 VAPYRNQAKRVAWEYLKYYTNPIPGR--------VVNESELYIELPTRHARSPGARLYII 114
Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNTR 231
+ PD G + V DE + + I + + + +
Sbjct: 115 G----ADHPDALRGIYLDG---VILDEYADIKPELWGGVIRPAL--ADRQGWAVFIGTPK 165
Query: 232 RLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
N FY++ W T + + + + ++ R E+L F
Sbjct: 166 GQN-QFYEMYQHAEKSAGWYSCIYRTDETGVLPAEELKDMQAQMTEM--EIRQELLCDFT 222
Query: 290 QQEVNNFIPHNYIEEAMSREAIDDL--YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
+ IP + + A +R DD P+I+G D+A G D+TV+ R+G ++ +
Sbjct: 223 ASASDVVIPIDLVTAAANRLLKDDDVLGQPVILGVDVARFGDDRTVLCVRQGLWLKEVRT 282
Query: 348 WSAKLIQET 356
++ ET
Sbjct: 283 FTGLSTMET 291
>gi|303243859|ref|ZP_07330199.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
IH1]
gi|302485795|gb|EFL48719.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
IH1]
Length = 445
Score = 92.1 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 29/261 (11%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
++AGR GK+ L A+++++L ST+ IA + ++ E+ K++ +
Sbjct: 56 VAAGRRFGKSKLMAFLLIFLCSTQKNKKYAVIAPFYANAR-IIFRELKKYIEKS---NVL 111
Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
+ S + A + ID + S + P + G V DEA+
Sbjct: 112 SRLVKRMVESPYMAIEFKTGCTIDFR---------SADNPTSIRG---ESYHLVILDEAA 159
Query: 202 GTPDIINK-SILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTRT 257
D + K I + + I T N FY+ F ++ T T
Sbjct: 160 FIKDDVVKYVIKPLLLDYDAPLIEISTPNGH---NHFYESFLMGKNKQNRHISFRFPTWT 216
Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID----D 313
+ E I G DS V + E +F YI++ + +
Sbjct: 217 NPFLPKNAIEEIKQEVGEDSPVWKQEYCAEFIDNNE-AVFNWEYIQQCIDGTIKLLKSGE 275
Query: 314 LYAPLIMGCDIAGEGGDKTVV 334
+MG D+A D TV+
Sbjct: 276 SGHQYVMGVDLAKF-EDYTVI 295
>gi|85716479|ref|ZP_01047450.1| prophage MuMc02, terminase, ATPase subunit, putative [Nitrobacter
sp. Nb-311A]
gi|85696668|gb|EAQ34555.1| prophage MuMc02, terminase, ATPase subunit, putative [Nitrobacter
sp. Nb-311A]
Length = 250
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/262 (17%), Positives = 77/262 (29%), Gaps = 38/262 (14%)
Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
P WQ E + N + C+ + GKTT+ A M L G +
Sbjct: 24 PDPWQAELLR----------LNPKRALLLCSRQS----GKTTVTALMALHRAIYETGALV 69
Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
+ ++ S Q L ++ K L + + EL S
Sbjct: 70 VIVSPSNRQSGEML-RQIKKLHGSLKGAPEL------VGDAVLKVELANGS--------R 114
Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
I +E+ G V DEAS D + ++ +T
Sbjct: 115 IIALPGTEKTIRGIAG-----VSLVIIDEASRVDDELLAAVRPMLATRADGSLIALT-TP 168
Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
G+FY+ ++ + W R ++ I F + G E F
Sbjct: 169 AGKRGFFYEAWHSDDQTWHRVRVAASDCPRISKEFLADELRSLGP--ARYSEEYELAFVD 226
Query: 291 QEVNNFIPHNYIEEAMSREAID 312
+ + P IE A + E
Sbjct: 227 -DAASAFPTAVIERAFTTEVEP 247
>gi|261402679|ref|YP_003246903.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius
M7]
gi|261369672|gb|ACX72421.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius
M7]
Length = 437
Score = 87.5 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/263 (18%), Positives = 91/263 (34%), Gaps = 33/263 (12%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
++AGR GK+ L +++++L T+ IA + ++ E+ ++
Sbjct: 50 VAAGRRFGKSKLMCFLLIFLSCTQKDKKFAVIAPYYANAR-IIFKELRTYIEKNKT---L 105
Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
+ + S + + ID + S + P + G V DEA+
Sbjct: 106 QKLVKRITESPYMVIEFKTGCIIDFR---------SADNPTSIRG---ESYHLVILDEAA 153
Query: 202 GTPDIINK-SILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-----NIPLEDWKRYQIDT 255
D + K I + + I T N FY+ F ++ T
Sbjct: 154 FIKDDVVKYVIKPLLIDYDAPLIEISTPNGH---NHFYESFLMGENRQNRHI--SFRFPT 208
Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--- 312
+ + E I +G DS V + E +F + + YI++ +
Sbjct: 209 WSNPFLPKSVIEEIKREFGEDSLVWKQEFCAEFID-DQDAVFKWEYIQQCIDSNIELLTV 267
Query: 313 -DLYAPLIMGCDIAGEGGDKTVV 334
+ +MG D+A D TV+
Sbjct: 268 GEKGHRYVMGVDLAKY-QDYTVI 289
>gi|327191373|gb|EGE58399.1| prophage MuMc02, terminase, ATPase subunit, putative [Rhizobium
etli CNPAF512]
Length = 248
Score = 85.9 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 46/264 (17%), Positives = 89/264 (33%), Gaps = 42/264 (15%)
Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
+P WQ + A N ++ C+ + GK+T+ A++++ P
Sbjct: 22 EPDPWQANLLRA----------NPRRSMLLCSRQS----GKSTVAAFLVIQTALFVPAAQ 67
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
I+ ++ ++ Q N L+ + +LS LP +S S
Sbjct: 68 IVVVSPTQRQ-SNELFRTIVGFLSRLPGAPRPTAESKQGTE--------------LSNGA 112
Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
+ +E+ G V DEA+ D + ++ P+ + +
Sbjct: 113 RVLSLPGTEKTIRGIAGVD-----LVVMDEAARVEDALLTAVRPMMATK-PDARLVALTT 166
Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG--LDSDVARIEILGQ 287
GWFY+ + W+R ++ I F + + G S+ + +
Sbjct: 167 PAGKRGWFYEAWVSDDPSWERVRVPASACPRITQQFLDEELKALGAIKFSEEYGL----E 222
Query: 288 FPQQEVNNFIPHNYIEEAMSREAI 311
F E P IE A ++E
Sbjct: 223 FHDPEE-AVFPLAIIEAAFTQEVR 245
>gi|260906962|ref|ZP_05915284.1| hypothetical protein BlinB_16637 [Brevibacterium linens BL2]
Length = 249
Score = 80.9 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/257 (16%), Positives = 76/257 (29%), Gaps = 40/257 (15%)
Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
P WQ + + + R +GKTT A+ L PG +
Sbjct: 24 PELWQERLLRT--------------QEARVLVLCARQVGKTTATAYKALHAAMFNPGRDV 69
Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
+ ++ S+ Q + R + + P + E + S
Sbjct: 70 LIVSPSQRQ------------SDEMLRRVASLYRGMKEAPKLSRSNTSEMGLSNGS---R 114
Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
+ SE F G + DEAS D + S+L + S
Sbjct: 115 VVSLPGSEGGIRGFAG-----VKLLILDEASRVDDDVFASVLPMVASDGQ---MVALSTP 166
Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
GWF+++ W+R+++ + + + G S V + L +F
Sbjct: 167 WGRRGWFHELHQETRNGWERHKVTVYESDQYTPPRIAEVKASLG--SFVFSSDYLCEFGD 224
Query: 291 QEVNNFIPHNYIEEAMS 307
+ + A S
Sbjct: 225 TDS-QLFSTENVRAAFS 240
>gi|212703250|ref|ZP_03311378.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
gi|212673294|gb|EEB33777.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
Length = 330
Score = 76.7 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 15/168 (8%)
Query: 198 DEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------WK 249
DE + + + + + + +I + N F +++ + W
Sbjct: 2 DEVAQMKPEVWGEVVQPALADRRGSAVFI--GTPKGAN-LFAELYQRGMAAQAQGDAAWC 58
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
+ + + + E + L + R E+L F + IP + EA +R+
Sbjct: 59 ALSYPVTSTDVLPAEDVERLRRE--LSDNAFRQEMLCDFTASSDDILIPLPDVLEAEARQ 116
Query: 310 AI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D P+I+G D+A G D +V+V R+G ++ +
Sbjct: 117 LAWDDVGGMPVILGVDVARFGADSSVIVRRQGLKVDGPVVMRGLDNMQ 164
>gi|218290759|ref|ZP_03494841.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius
LAA1]
gi|218239297|gb|EED06496.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius
LAA1]
Length = 422
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/295 (17%), Positives = 94/295 (31%), Gaps = 42/295 (14%)
Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
S+P QL + H + + F+ A + GR GKT A + PG
Sbjct: 7 SEPTSKQLR-LRLYTPHSGQVALHRSTARFRVA-TCGRRWGKTYACANEIAKWAWEHPGA 64
Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
+A + Q + + + ++ + + +
Sbjct: 65 MTWWVAPTYRQ----------------------TLTAYRIITRNFHGAIEKATTTHMRIE 102
Query: 169 YTITCRT--YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-GFFTELNPNRFWI 225
+ T S E D G + DEA+ P ++ L ++ +
Sbjct: 103 WKSGSITEFRSTENFDALRG---EGLDFLVVDEAAMVPKEAWEAALRPTLSDKAGRAIIV 159
Query: 226 MTSNTRRLNGWFYDIFNIPLE----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
S + N WFY ++ + +W+ ++ T I E + L SDV R
Sbjct: 160 --STPKGRN-WFYHVWARGQDPAFPEWESFRFPTLANPYIPPEEVEEARTT--LPSDVFR 214
Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
E +F + F + +E ++G D+A D +V+V
Sbjct: 215 QEYEAEFLEDSAGVF--RGIRDCISGQEEEPQPGRRYVVGWDVAKH-QDFSVLVV 266
>gi|159904490|ref|YP_001548152.1| hypothetical protein MmarC6_0096 [Methanococcus maripaludis C6]
gi|159885983|gb|ABX00920.1| protein of unknown function DUF264 [Methanococcus maripaludis C6]
Length = 505
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/311 (15%), Positives = 87/311 (27%), Gaps = 57/311 (18%)
Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
Q E EA+D + I+ GR GKT + + S G S++ +A
Sbjct: 65 QEEIAEAID----------SEMYDVITINIGRRGGKTEVMGGVGPKFCSKYRGFSVLVVA 114
Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
Q K ++ ++ + L + + +
Sbjct: 115 PVYNQAKT-MYKKIKRGLESNKESRQLVKPKKEGFKESPFPLITFYNGSTIEFK------ 167
Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNTRRL 233
S E PD + + DEA+ D I + + + S
Sbjct: 168 --SAETPDNLR---SEGYDLIIVDEAAFVDDEIISAVLEPMLMDSGG--ILVKISTPWGT 220
Query: 234 NGWFYDIFNI----------------PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
FYD + +K ++ + + F G G D+
Sbjct: 221 GNHFYDSYIKGELQAKMLEEGEGIPEDELRYKSFKFPSWVNPYLSKRFLMGKKKDLGEDN 280
Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMS-----------REAIDDLYA---PLIMGCD 323
V E +F ++ +++ +S + D ++G D
Sbjct: 281 PVWLQEYCAEF-IEDDTTVFSTAHVQACLSDAFETHYKTENLIYLIDEGERNKEYVIGLD 339
Query: 324 IAGEGGDKTVV 334
+A D TV
Sbjct: 340 LAKHN-DYTVF 349
>gi|116624478|ref|YP_826634.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus
Ellin6076]
gi|116227640|gb|ABJ86349.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus
Ellin6076]
Length = 260
Score = 74.0 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/261 (14%), Positives = 75/261 (28%), Gaps = 29/261 (11%)
Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
W + + V ++ + ++ R GK+T+ A + G I
Sbjct: 25 EWARRALGFEADAAQARVLDTRSK--RVLLNCTRQWGKSTVTAARAVHEAVKNAGSLTIA 82
Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
+ + Q + + + SG + S +
Sbjct: 83 VTPTARQTGEFV-------------------RKAATFASGLEMRVKGDGHNEMSLAFPNG 123
Query: 173 CRTYSEERPDT-FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
R + G + DEAS D + ++ ++ W+M S
Sbjct: 124 SRIVGLPGTEATVRGFSA--VTLLLIDEASRVGDDLYMAMRPML-AVSAGTLWLM-STPH 179
Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
G+FY+ + E W+R + + + E G + R E +F +
Sbjct: 180 GKRGFFYEAWANGGETWERVSVKAEDCPRFKAEYLEEERQVMGER--IYRQEYCCEF-GE 236
Query: 292 EVNNFIPHNYIEEAMSREAID 312
+ IE A S E
Sbjct: 237 TSGAVFDRDLIEAAFSDEVTP 257
>gi|229844502|ref|ZP_04464642.1| predicted phage terminase large subunit [Haemophilus influenzae
6P18H1]
gi|229812751|gb|EEP48440.1| predicted phage terminase large subunit [Haemophilus influenzae
6P18H1]
Length = 452
Score = 74.0 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/275 (16%), Positives = 95/275 (34%), Gaps = 28/275 (10%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A ++ T+P + ++C E+ K +S +
Sbjct: 27 GGRGSGKSFSIARALVLRAYTQP-IRVLCC------------REIQKSISDSVIQM-LAD 72
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q L ++ Q +G + +T + + G V+ +E
Sbjct: 73 QIEMLGLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
++ E ++ N + + Y F P E K ++ +
Sbjct: 128 SKESWDVLIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI--PHNYIEEAMS--REAIDDLYAPL 318
E ++ D ++ R G+ P + + I P +I+ A+ ++
Sbjct: 186 KELMEDMVQMRERDYELYRHVYEGE-PVADSDKVIIKPL-WIDAAVDAHKKLGFVAAGRK 243
Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
I+G D+A EG D F G+++ + +W + +
Sbjct: 244 IIGFDVADEGSDANANAFVHGSVVLRMDEWHGEDV 278
>gi|329122215|ref|ZP_08250807.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
gi|327474100|gb|EGF19511.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
Length = 452
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 28/275 (10%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A ++ T+P + ++C E+ K +S +
Sbjct: 27 GGRGSGKSFSIARALVLRAYTQP-IRVLCC------------REIQKSISDSVIQM-LAD 72
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q L ++ Q +G + +T + + G V+ +E
Sbjct: 73 QIEMLGLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
++ E ++ N + + Y F P E K ++ +
Sbjct: 128 SKESWDVLIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI--PHNYIEEAMS--REAIDDLYAPL 318
E + D ++ R G+ P + + I P +I+ A+ ++
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDKVIIKPL-WIDAAVDAHKKLGFVAAGRK 243
Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
I+G D+A EG D F G+++ + +W + +
Sbjct: 244 IIGFDVADEGSDANANAFVHGSVVLRMDEWRGEDV 278
>gi|303257560|ref|ZP_07343572.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
gi|302859530|gb|EFL82609.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
Length = 330
Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 35/170 (20%), Positives = 56/170 (32%), Gaps = 13/170 (7%)
Query: 195 VFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGW--FYD----IFNIPLED 247
V DE + + + I + +I + +N + YD + + D
Sbjct: 6 VVIDEVAQIKPTLWGEVIRPALADRKGWAAFI--GTPKGINLFSQLYDQALNLMSKGDPD 63
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
W ID + + R E L F + N IP + I A +
Sbjct: 64 WIAMLYSVEQTHVIDEKELAALKVEMSE--NEFRQEFLCDFSAAQDNGLIPIDDIRAAAN 121
Query: 308 REAIDDLY--APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
+ + Y APLI G D+A G D +V+ RRG +
Sbjct: 122 KFYRESEYMGAPLIYGIDVARFGSDASVIFKRRGLVAFEPIVIRKFDNMA 171
>gi|119386463|ref|YP_917518.1| PBSX family phage terminase large subunit [Paracoccus denitrificans
PD1222]
gi|119377058|gb|ABL71822.1| phage terminase, large subunit, PBSX family [Paracoccus
denitrificans PD1222]
Length = 441
Score = 71.7 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/266 (19%), Positives = 87/266 (32%), Gaps = 34/266 (12%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A M+ T PG+S IC+ +V K L + E
Sbjct: 26 GGRGSGKSWDRAMHMIVRHLTEPGLSSICL------------RDVQKSLDQSVFKLLVE- 72
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
+ L + + + + I +E + +A + + A+
Sbjct: 73 TAARLGVAEAIRPVESDRIIRTPGNGIIAFNGMNEFNAENIKSL-EGFDIAWWEEAATAG 131
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTR----------RLNGWFYDIFNIPLEDWKRYQI 253
+ + + W T N R R + F D + +W
Sbjct: 132 QGPL-DMLRPTLRKPGSQ-IWF-TYNPRLRSDPVDVMMRQDARFADSRTVVEANW----- 183
Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
R E + D R G + + FI + EAM+R+
Sbjct: 184 --RDNPFRGPELEEERLLDLAGDEARYRHIWEGDYEAESDMQFIGGGLVREAMARQPFSQ 241
Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRG 339
+ L++G D+A G D++V+ RRG
Sbjct: 242 IGDELVLGVDVARFGDDRSVIWARRG 267
>gi|150021340|ref|YP_001306694.1| hypothetical protein Tmel_1462 [Thermosipho melanesiensis BI429]
gi|149793861|gb|ABR31309.1| protein of unknown function DUF264 [Thermosipho melanesiensis
BI429]
Length = 421
Score = 71.3 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/264 (18%), Positives = 87/264 (32%), Gaps = 39/264 (14%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
I AGR GKT A + + + P +I S Q K +
Sbjct: 39 ICAGRRFGKTNYVAGKIFYYATIHPKSRVIVGGPSLDQAKIY---------------YDL 83
Query: 142 EMQSLSLHPSGWYAELLEQS--MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
+++ L P + + + S I K+ + + G V E
Sbjct: 84 LTEAIELSPLKGFVKKTKDSPFPTIYLKNGSSITVRSTAHNGKYLRG---RKVNLVVLTE 140
Query: 200 ASGTPDIINK-SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR---YQIDT 255
A+ D + + I +L+ I+ S +N +FY+ + L++ K +
Sbjct: 141 AAFIKDSVYEQVITPM--KLDTGAPVILESTPNGMN-YFYEEYQRGLKNKKHTISFHATV 197
Query: 256 RTVEGIDSGFHEGIISR---YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
+D E ++ Y V R E L +F + F P + EA +
Sbjct: 198 YDNPFLDQEEIENAKAKTPDY-----VWRQEYLAEFVD-DDTVFFPWKILVEAFEDYKPE 251
Query: 313 DLYAPLI--MGCDIAGEGGDKTVV 334
+G D+A D TV+
Sbjct: 252 GYKDGRKYSIGVDLAKY-RDYTVI 274
>gi|294508906|ref|YP_003566117.1| hypothetical protein PSR_11004 [Salinibacter ruber M8]
gi|294342043|emb|CBH22709.1| conserved hypothetical protein [Salinibacter ruber M8]
Length = 255
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/260 (17%), Positives = 84/260 (32%), Gaps = 40/260 (15%)
Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
P WQ + + + + CA + GKTT +A + L +
Sbjct: 8 PDPWQEALLTS----------DWERALLNCARQS----GKTTASAALALETALEATDSLV 53
Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
+ +A + Q K L V + QS E + + + K T
Sbjct: 54 LILAPARRQSKEFL-RSVRSLYRDAAPDGGLDKQS----ELRLRLENESRIIALPGKEGT 108
Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
+ R Y+ + V DEA+ PD + + S
Sbjct: 109 V--RGYTAD--------------LVIADEAARVPDAAYVATRPMLAVTGGRFVGL--STP 150
Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
GWFY+ + P ++W++ ++ + + F E G R E + +F
Sbjct: 151 AGQRGWFYEAWTDPGQEWEQVKVTGQDCPRMTEAFLEQERREMGDWQ--FRSEYMCEFTD 208
Query: 291 QEVNNFIPHNYIEEAMSREA 310
E + +IE +++ E
Sbjct: 209 TE-DQLFATEHIESSLTSEV 227
>gi|149174861|ref|ZP_01853485.1| hypothetical protein PM8797T_10814 [Planctomyces maris DSM 8797]
gi|148846198|gb|EDL60537.1| hypothetical protein PM8797T_10814 [Planctomyces maris DSM 8797]
Length = 568
Score = 69.4 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 54/225 (24%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
WQ + +E++ + TI + + G GK II
Sbjct: 57 DDWQWDILESL----------FDLTIRRVFVKGNTGCGKGAAAGIACCTYFHIWNDAKII 106
Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
+S + + EV KW + + ++ + + + ++ L
Sbjct: 107 ITRDSVRTAQKIAFGEVDKWWRKMRFKPPGKLLTSGVFDNNQHSISL------------- 153
Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFWIMTSN 229
+ + + F G H+ H + + DEA+ D + + ++ SN
Sbjct: 154 ----ANPQHIEGFRGAHSPH-VFFWFDEATAPNLEDKYKLANTQA-------KKFLALSN 201
Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
L+G F D F ++ + II +YG
Sbjct: 202 PSTLSGTFRDSF-----------------PVVNPDKTQTIIDQYG 229
>gi|328952976|ref|YP_004370310.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM
11109]
gi|328453300|gb|AEB09129.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM
11109]
Length = 466
Score = 69.4 bits (168), Expect = 9e-10, Method: Composition-based stats.
Identities = 51/293 (17%), Positives = 90/293 (30%), Gaps = 50/293 (17%)
Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
P WQ +F+ V+ + C+ + GK+T A + L PG I
Sbjct: 27 PDPWQQDFL----------VSRPEQALLLCSRQS----GKSTSAAALALHEALFHPGALI 72
Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
+ ++ S Q L+ + + LPH +
Sbjct: 73 LLLSPSLRQ-SQELFRKAAGLYQRLPHAP------------------AACRTSALRLEFD 113
Query: 171 ITCRTYSE-ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
R S + +T G + + DEA+ PD + ++ S
Sbjct: 114 HGSRIISLPGQEETIRGFSEVRLLVI--DEAALVPDELYYAVRPML--AVSRGRLTALST 169
Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
GWFY + + W+RY I I + F L + R E +F
Sbjct: 170 PAGKRGWFYHCYTEGGDQWQRYTIPATQCPRISADFLAAEQRS--LPAAWFRAEYFCEF- 226
Query: 290 QQEVNNFIPHNYIEEAMSREAID--------DLYAPLIMGCDIAGEGGDKTVV 334
+ N P + ++ A + +G D+ G+ D + +
Sbjct: 227 GEAANQLFPAHLLQTAQCSQVSPLFAEITPSPPTGTFFIGLDL-GQSQDYSAL 278
>gi|302339289|ref|YP_003804495.1| hypothetical protein Spirs_2798 [Spirochaeta smaragdinae DSM 11293]
gi|301636474|gb|ADK81901.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
Length = 295
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/253 (17%), Positives = 78/253 (30%), Gaps = 45/253 (17%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GK+T+ A G II ++ + Q K ++ F S
Sbjct: 57 GKSTVIAAKAAHKAKFFSGSLIILVSPALRQSK-----------ELMRKVEDFIALDKSF 105
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
P+ E Q I SE+ G + DEAS PD +
Sbjct: 106 PPAS---EEDNQLTKEFKNRSRIVALPGSEKTIRGLSG-----PTLIIIDEASRIPDELY 157
Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH-- 266
K+I + ++ + G FYD ++ W + ++ R + G
Sbjct: 158 KAIRPMMAGADTE--LVLMTTPFGKRGVFYDAWSRSK-RWTKIEVVGRDILGRFPNEQVY 214
Query: 267 ------EGIISRYGLDSDV--------------ARIEILGQFPQQEVNNFIPHNYIEEAM 306
+GI + Y V R E G+F +++ + A+
Sbjct: 215 AQLRRKDGIKACYSPRHSVEFLGEELEEMGEWWYRQEYGGEFMDP-IDSVFNMEDVRAAI 273
Query: 307 SREAIDDLYAPLI 319
+ +AP+I
Sbjct: 274 INDTPAISFAPII 286
>gi|116625333|ref|YP_827489.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus
Ellin6076]
gi|116228495|gb|ABJ87204.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus
Ellin6076]
Length = 260
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/221 (14%), Positives = 63/221 (28%), Gaps = 27/221 (12%)
Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
GK+T+ A + T+ I ++ + Q + +
Sbjct: 58 WGKSTVTAARAVHEAVTKADSLTIAVSPTARQTGEFV-------------------RKAE 98
Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT-FVGPHNTHGMAVFNDEASGTPDI 206
++ S + R + G + DEAS D
Sbjct: 99 AFAGMLKMKVKGDGSNEMSLAFPNGSRIVGLPGTEATVRGFSA--VALLLVDEASRVEDD 156
Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
+ ++ ++ W+M S G+FY+ + W+R + + +
Sbjct: 157 LYMAMRPML-AVSGGTLWLM-STPWGKRGFFYEAWANGGPTWERVSVKAEDCPRFGAEYL 214
Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
E G + R E +F + + IE A S
Sbjct: 215 EEERRVMGER--IYRQEYCCEFGESSS-AVFDRDLIEAAFS 252
>gi|307308946|ref|ZP_07588629.1| hypothetical protein SinmeBDRAFT_4513 [Sinorhizobium meliloti
BL225C]
gi|306900580|gb|EFN31193.1| hypothetical protein SinmeBDRAFT_4513 [Sinorhizobium meliloti
BL225C]
Length = 408
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 20/200 (10%)
Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
GKT + A + W + + + SE+ +KN +W+ + + + S
Sbjct: 208 WGKTYVAAIAVWWSLVCFDDVKVTIFGPSESLIKNGMWSNLQALHARMA----------S 257
Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
+ S + R S + G H + VF D+A G +++
Sbjct: 258 SFKDLFDVSATRVSRKTAAPSCFAEYRLVSADNASAARGIHAVNN-FVFVDDADGVSEVV 316
Query: 208 NKSILGFFTELNPNRFWI--MTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
++ + NP + M +N + ++FN L + + D
Sbjct: 317 IAYLMNIMIDPNPKLCLLSTMFANETPKLETVTEAELFNEALSSLRAM-VSGEV--RTDP 373
Query: 264 GFHEGIISRYGLDSDVARIE 283
+ E I RY L++
Sbjct: 374 VWLEAI--RYQLENAEYLAR 391
>gi|289581321|ref|YP_003479787.1| hypothetical protein Nmag_1649 [Natrialba magadii ATCC 43099]
gi|289530874|gb|ADD05225.1| hypothetical protein Nmag_1649 [Natrialba magadii ATCC 43099]
Length = 602
Score = 65.9 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 43/366 (11%), Positives = 101/366 (27%), Gaps = 83/366 (22%)
Query: 49 SQPHRWQLEFMEAVD----VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
+ W + +E + + + + G+GK+ + A + + ++
Sbjct: 22 AGDETWLEDAIEDYLGITVTGAQAQICRGIAANERLLVVTANGLGKSYILAAITIVWLTV 81
Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
R + +E ++K T + + + P + + + I
Sbjct: 82 RYPACSFATSGTERKMKRTY------------CKPVENLHGDARVPLPGEYKSRPERIEI 129
Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFTELNPNR 222
D + ++ + G H + +A+ +EA + ++ T+
Sbjct: 130 DGEPEHFFEAASPQDAGE-LEGVHAAYTLAII-EEADKKDVDAEVLDAMKSLVTDEQDRI 187
Query: 223 FWIMTSNTRRLNGWFY---DIFNIPLEDWKRYQIDTRTVEGIDSG--------------- 264
I + + Y D + P W+ + + +
Sbjct: 188 IAIA-NPPKDETNSIYPILDEQDDPTSKWEVLEFSSFDSHNVQVELGNVDDEKVDGLASL 246
Query: 265 -FHEGIISRYG--------------------------------LDSDVARI--------E 283
+ Y D+ R
Sbjct: 247 HKIQDDWEDYNKEPWPGAETARTLSAPKLDADGNPVFSHSDALEDNPEFRTDLDQRWYRR 306
Query: 284 ILGQFPQQ--EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
G P N + + A R+ + P G D+A +GGD+T V+ G++
Sbjct: 307 RAGIIPPGGASKNRPFTIDDVNAAWGRDWQP-VGRPQATGIDVARDGGDRTPVISVDGDV 365
Query: 342 IEHIFD 347
+E ++
Sbjct: 366 LEVRYE 371
>gi|260580755|ref|ZP_05848581.1| phage terminase large subunit [Haemophilus influenzae RdAW]
gi|260092572|gb|EEW76509.1| phage terminase large subunit [Haemophilus influenzae RdAW]
Length = 447
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 26/280 (9%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A ++ P + ++C E+ K +S +
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQM-LAD 72
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q L ++ Q +G + +T + + G V+ +E
Sbjct: 73 QIEMLSLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
++ E ++ N + + Y F P E K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLI 319
E + D ++ R G+ P + + I +IE A+ +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKK 244
Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
+G D+A EG D F G+++ I W + ++
Sbjct: 245 VGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANR 284
>gi|315426011|dbj|BAJ47659.1| prophage MuMc02, terminase, ATPase subunit [Candidatus
Caldiarchaeum subterraneum]
Length = 439
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 59/276 (21%), Positives = 99/276 (35%), Gaps = 23/276 (8%)
Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ-L 120
+ +H +P+ F+ I RG G T A T P +I+ I+ S Q L
Sbjct: 19 IRLHPWQKRFIDDPSRFRI-ILKHRGAGATFTIAAEACAEALTHPASTILLISYSLRQSL 77
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
+ ++ V LS L ++ S+ + A +E G
Sbjct: 78 E--IFRHVRTILSRLENKRLKHGHSIYRLAAKIGARTVELGNGSR--------IISLPNN 127
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
P++ G AV+ DEA+ N FT + N + S + GWF++
Sbjct: 128 PESLRGYRAD---AVYVDEAAFFRGDTNLKTAIMFTTVARNGRVTLVSTPKGKRGWFHEA 184
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPH 299
+ W ++ + I E + S + R E++ +F EVN FIP+
Sbjct: 185 WTTDNT-WSKHLVKLGDSPHITMHDLEELRKTM---SPLEWRQEMMCEFLD-EVNAFIPY 239
Query: 300 NYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTVV 334
I E + + + +G D D TV+
Sbjct: 240 EKILECVEDYVPARVVGGRVYVGVDFGRF-RDSTVI 274
>gi|309379923|emb|CBX21334.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 449
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/279 (15%), Positives = 86/279 (30%), Gaps = 21/279 (7%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A + + +S R G I+C E L ++ E
Sbjct: 20 GGRGSGKSYFLAELAV-EVSRRIGTVILCA------------REFQGSLDDSVYQLLIET 66
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
+ + + + + + + G + +EA
Sbjct: 67 IERLGYTEEFDILKSTITHKGTGAKFVFYGIKNNVTKIKSIQG-----VGVCWVEEAEAV 121
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI-D 262
++ W+ + L+ + P +D + + D
Sbjct: 122 TKNSWDVLIPSIRGDKNAEIWVSFNPKNILDDTYRRFIVHPPQDSIVLKANYDINPHFAD 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ ++ D D+ R LG+ I ++IE A+ + I+
Sbjct: 182 TPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIEAAIDAHEKLGFQAAGKRIL 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
G D+A EG D V R G+++ + W + + + +
Sbjct: 242 GFDVADEGDDANATVLRHGSVVTDMRQWRGQDVIYSADK 280
>gi|148826888|ref|YP_001291641.1| phage terminase large subunit [Haemophilus influenzae PittGG]
gi|148718130|gb|ABQ99257.1| predicted phage terminase large subunit [Haemophilus influenzae
PittGG]
Length = 366
Score = 64.4 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 26/280 (9%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A ++ P + ++C E+ K +S +
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQM-LAD 72
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q L ++ Q +G + +T + + G V+ +E
Sbjct: 73 QIEMLGLRAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
++ E ++ N + + Y F P E K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLI 319
E + D ++ R G+ P + + I +IE A+ +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKK 244
Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
+G D+A EG D F G+++ I W + ++
Sbjct: 245 VGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANR 284
>gi|187476925|ref|YP_784949.1| phage terminase large subunit [Bordetella avium 197N]
gi|115421511|emb|CAJ48020.1| Putative phage terminase large subunit [Bordetella avium 197N]
Length = 512
Score = 64.0 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 284 ILGQFPQQEVN---NFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDKTVVVFRRG 339
+ G F + IP ++E A +R D AP+ +G D+A G DKT++ R G
Sbjct: 277 LYGDFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGLDVARGGRDKTILARRHG 336
Query: 340 NIIEHIFDWSAKLI 353
+ + K
Sbjct: 337 WWFDEPLVYPGKDT 350
>gi|319776448|ref|YP_004138936.1| phage terminase large subunit [Haemophilus influenzae F3047]
gi|319897217|ref|YP_004135412.1| phage terminase large subunit [Haemophilus influenzae F3031]
gi|329123931|ref|ZP_08252483.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
gi|317432721|emb|CBY81084.1| predicted phage terminase large subunit [Haemophilus influenzae
F3031]
gi|317451039|emb|CBY87270.1| predicted phage terminase large subunit [Haemophilus influenzae
F3047]
gi|327468126|gb|EGF13613.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
Length = 447
Score = 63.6 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/280 (15%), Positives = 89/280 (31%), Gaps = 26/280 (9%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A ++ P + ++C E+ K +S +
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQM-LAD 72
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q L ++ Q +G + +T + + G V+ +E
Sbjct: 73 QIEMLGLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
++ E ++ N + + Y F P E K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLI 319
E + D ++ R G+ P + + I +IE A+ +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKK 244
Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
+G D+A EG D F G+++ + W + ++
Sbjct: 245 VGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANR 284
>gi|145629503|ref|ZP_01785301.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|145641440|ref|ZP_01797019.1| predicted phage terminase large subunit [Haemophilus influenzae
R3021]
gi|144978346|gb|EDJ88110.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|145273983|gb|EDK13850.1| predicted phage terminase large subunit [Haemophilus influenzae
22.4-21]
gi|309750959|gb|ADO80943.1| Probable bacteriophage terminase, large subunit [Haemophilus
influenzae R2866]
Length = 447
Score = 63.6 bits (153), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/280 (15%), Positives = 89/280 (31%), Gaps = 26/280 (9%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A ++ P + ++C E+ K +S +
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQM-LAD 72
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q L ++ Q +G + +T + + G V+ +E
Sbjct: 73 QVEMLGLQDFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
++ E ++ N + + Y F P E K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLI 319
E + D ++ R G+ P + + I +IE A+ +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKK 244
Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
+G D+A EG D F G+++ + W + ++
Sbjct: 245 VGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANR 284
>gi|68250076|ref|YP_249188.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
gi|68058275|gb|AAX88528.1| predicted phage terminase large subunit [Haemophilus influenzae
86-028NP]
Length = 447
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 26/280 (9%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A ++ P + ++C E+ K +S +
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQM-LAD 72
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q L ++ Q +G + +T + + G V+ +E
Sbjct: 73 QIEMLGLQNFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
++ E ++ N + + Y F P E K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLI 319
E + D ++ R G+ P + + I +IE A+ +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIECAVDAHLKLGFTAKGMKK 244
Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
+G D+A EG D F G+++ I W + ++
Sbjct: 245 VGFDVADEGADSNDNAFVHGSVVLDIEVWKNGDVIDSANR 284
>gi|329119006|ref|ZP_08247700.1| phage terminase large subunit [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464879|gb|EGF11170.1| phage terminase large subunit [Neisseria bacilliformis ATCC
BAA-1200]
Length = 449
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/279 (14%), Positives = 86/279 (30%), Gaps = 21/279 (7%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A + + ++ R G I+C E L ++ E
Sbjct: 20 GGRGSGKSYFLAELAV-EVARRIGTVILCA------------REFQGSLDDSVYQLLTET 66
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
+ + + + + + + G + +EA
Sbjct: 67 IARLGYTQEFEILKSSIRHKGTGAKFVFYGVKNNITKIKSIQG-----VGICWVEEAEAV 121
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI-D 262
++ W+ + L+ + P +D + + D
Sbjct: 122 TKNSWDVLIPSIRGDKNAEIWVSFNPKNILDDTYQRFIVHPPKDSIVLKANYDINPHFAD 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ ++ D D+ R LG+ I ++IE A+ + I+
Sbjct: 182 TPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIEAAIDAHEKLGFSAAGRRIL 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
G D+A EG D V R G+++ + W + + + +
Sbjct: 242 GFDVADEGDDANATVLRHGSVVTDMQQWRGQDVIYSADK 280
>gi|41179386|ref|NP_958694.1| Bbp25 [Bordetella phage BPP-1]
gi|45569518|ref|NP_996587.1| hypothetical protein BMP-1p24 [Bordetella phage BMP-1]
gi|45580769|ref|NP_996635.1| hypothetical protein BIP-1p24 [Bordetella phage BIP-1]
gi|40950125|gb|AAR97691.1| Bbp25 [Bordetella phage BPP-1]
Length = 533
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 284 ILGQFPQQEVN---NFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDKTVVVFRRG 339
+ G F + IP ++E A +R D AP+ +G D+A G D T++ R
Sbjct: 298 LYGDFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDNTILARRHA 357
Query: 340 NIIEHIFDWSAKLI 353
+ + K
Sbjct: 358 MWFDVPLTYPGKDT 371
>gi|301170180|emb|CBW29784.1| predicted phage terminase large subunit [Haemophilus influenzae
10810]
Length = 447
Score = 61.7 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/269 (16%), Positives = 85/269 (31%), Gaps = 26/269 (9%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A ++ P + ++C E+ K +S +
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQM-LAD 72
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q L ++ Q + + +T + + G V+ +E
Sbjct: 73 QVEMLGLQDFFDVQKTQIIEQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
++ E ++ N + + Y F P E K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLI 319
E + D ++ R G+ P + + I +IE A+ +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKK 244
Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
+G D+A EG D F G+++ I W
Sbjct: 245 VGFDVADEGADSNANAFVHGSVVLDIEVW 273
>gi|261381054|ref|ZP_05985627.1| phage terminase, large subunit, PBSX family [Neisseria subflava
NJ9703]
gi|284796087|gb|EFC51434.1| phage terminase, large subunit, PBSX family [Neisseria subflava
NJ9703]
Length = 450
Score = 61.7 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 5/167 (2%)
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQID 254
+ +EA D ++ + W+ T N + + Y F P +D ++
Sbjct: 117 WIEEAENVSDESWNILIPTIRKAGSE-IWL-TWNPKNILDPTYQRFVVNPPDDMVDIVVN 174
Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAID 312
+ S D D+ R LG+ + I +I+ A+ +
Sbjct: 175 YTDNIYLPEVLRLEAESCKARDYDLYRHIWLGEPVADSELSVIKPKWIDAAIDSHIKLGF 234
Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
+ I+G D+A EG D + + R G+++ + +W + + + +
Sbjct: 235 EATGQRILGFDVADEGDDASATILRHGSVVIDMDEWRGQDVIYSADK 281
>gi|157265496|ref|YP_001468054.1| phage terminase large subunit [Thermus phage P74-26]
gi|156905391|gb|ABU97034.1| phage terminase large subunit [Thermus phage P74-26]
Length = 485
Score = 61.3 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 10/194 (5%)
Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
+P E + H ++ S + A GR GK+ + ++ + RPG
Sbjct: 5 RPSDKFFELLGYKPHHVQLAIHRSTAK-RRVACL-GRQSGKSEAASVEAVFELFARPGSQ 62
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
IA + Q + V K + E+Q +K
Sbjct: 63 GWIIAPTYDQAEIIFGRVVEKVERLAEVFPATEVQLQRRRLRLLVHHYDRPVNAPGAKRV 122
Query: 170 TITC-RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMT 227
+ R S +RPD G V DEA+ P + ++I + + + ++
Sbjct: 123 ATSEFRGKSADRPDNLRGATLD---FVILDEAAMIPFSVWSEAIEPTLSVRDG--WALII 177
Query: 228 SNTRRLNGWFYDIF 241
S + LN WFY+ F
Sbjct: 178 STPKGLN-WFYEFF 190
>gi|157265379|ref|YP_001467938.1| terminase large subunit [Thermus phage P23-45]
gi|156905274|gb|ABU96918.1| terminase large subunit [Thermus phage P23-45]
Length = 485
Score = 61.3 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 10/194 (5%)
Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
+P E + H ++ S + A GR GK+ + ++ + RPG
Sbjct: 5 RPSDKFFELLGYKPHHVQLAIHRSTAK-RRVACL-GRQSGKSEAASVEAVFELFARPGSQ 62
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
IA + Q + V K + E+Q +K
Sbjct: 63 GWIIAPTYDQAEIIFGRVVEKVERLAEVFPATEVQLQRRRLRLLVHHYDRPVNAPGAKRV 122
Query: 170 TITC-RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMT 227
+ R S +RPD G V DEA+ P + ++I + + + ++
Sbjct: 123 ATSEFRGKSADRPDNLRGATLD---FVILDEAAMIPFSVWSEAIEPTLSVRDG--WALII 177
Query: 228 SNTRRLNGWFYDIF 241
S + LN WFY+ F
Sbjct: 178 STPKGLN-WFYEFF 190
>gi|319789040|ref|YP_004150673.1| protein of unknown function DUF264 [Thermovibrio ammonificans HB-1]
gi|317113542|gb|ADU96032.1| protein of unknown function DUF264 [Thermovibrio ammonificans HB-1]
Length = 419
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 53/319 (16%), Positives = 114/319 (35%), Gaps = 51/319 (15%)
Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
+Q+E ++ +D H S I R GK+ + ++ +T+P +I+
Sbjct: 6 PYQIEIVKGIDSHKFSV------------IKMARQTGKSFVVSYWATRRATTKPNHAIVV 53
Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
++ +E Q K + + ++++ L ++ + + + ++ + +
Sbjct: 54 VSPTERQSK------------LFVDKVKLHIKAMRLTGVKFFEDTELKKLEVNFPNGSQI 101
Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNT 230
PD G V DE + + + +++ T + + S
Sbjct: 102 --IALPANPDGIRGFSGD----VIMDEVAFFKNWQEVYRAVFPIITRK-KDYKLVAISTP 154
Query: 231 RRLNGWFYDIF----NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
N FY ++ N P I +G+ E + + D R E L
Sbjct: 155 FGKNDLFYYLWSISENNPKWFRYSLNIFEAVAKGLKVDVEE--LRAGIKNEDAWRTEYLV 212
Query: 287 QFPQQEVNNFIPHNYIEEAMSREA------IDDLYAPLIMGCDIAGEGGDKTVVVF--RR 338
+F E + +P+ I++ + I +L L G D+ D TV+ +
Sbjct: 213 EFID-EADAVLPYELIQKCEMPKEELLVEDIKELKGELYCGVDVGRR-KDLTVITLLEKL 270
Query: 339 GNI--IEHIFDWSAKLIQE 355
G++ + I + S K +E
Sbjct: 271 GDVLYVRRIEELSKKPFRE 289
>gi|67920466|ref|ZP_00513986.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
gi|67857950|gb|EAM53189.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
Length = 244
Score = 59.4 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 39/217 (17%)
Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS---------------IICIANSET 118
+P F+ + GR GK+ L + +I ++ +
Sbjct: 18 DPQKFQVLV-CGRRFGKSHLQ--VTKHVIDCLMFPKLMPGYNVKQQTMETAVLVGMPTLK 74
Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
Q + LW + K L P+ ++ G +++ + ++ + +
Sbjct: 75 QARKILWKPLVKTLENCPYVDKISRSDYTIRFKGNRPDIILAGLNDNAGDRARGLKLWR- 133
Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
V DE P +I+ I+ + P+ + T + N
Sbjct: 134 ----------------VCIDEVQDVRPSVIDAVIIPAMADT-PHSRALFTGTPKGKNNHL 176
Query: 238 YDIFN--IPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
Y++F +DWK Y T T I E R
Sbjct: 177 YNLFTMERDNDDWKSYNFPTWTNPLISKDEVERARKR 213
>gi|16273317|ref|NP_439561.1| terminase large subunit-like protein [Haemophilus influenzae Rd
KW20]
gi|1175785|sp|P44184|Y1410_HAEIN RecName: Full=Uncharacterized protein HI_1410
gi|1574247|gb|AAC23058.1| predicted coding region HI1410 [Haemophilus influenzae Rd KW20]
Length = 394
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 77/240 (32%), Gaps = 13/240 (5%)
Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
++ E+ K +S + Q L ++ Q +G + +T + +
Sbjct: 1 MFREIQKSISDSVIQM-LADQIEMLSLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKS 59
Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN- 242
G V+ +E ++ E ++ N + + Y F
Sbjct: 60 MTGID-----VVWVEEGENVSKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVI 112
Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNY 301
P E K ++ + E + D ++ R G+ P + + I +
Sbjct: 113 HPPERCKSVLVNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVW 171
Query: 302 IEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
IE A+ + +G D+A EG D F G+++ I W + ++
Sbjct: 172 IEYAVDAHLKLGFTAKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANR 231
>gi|149408318|ref|YP_001294421.1| conserved hypothetical protein ORF004 [Pseudomonas phage F8]
gi|219523873|ref|YP_002455934.1| terminase large subunit [Pseudomonas phage PB1]
gi|190333469|gb|ACE73724.1| terminase large subunit [Pseudomonas phage PB1]
Length = 460
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + I + N WI+ N + + Y F P +D
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWIIF-NPNEVTDFVYQNFVVKPPKDAFVKM 172
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMS--RE 309
I+ + + I Y D D A I G P+ + I +I A+ ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDKDQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
+ +G D+A +G D GN+I + +W
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDG 272
>gi|307251380|ref|ZP_07533296.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306856621|gb|EFM88761.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 384
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 12/223 (5%)
Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
E Q L+ ++ Q +G + +T + + G V+ +E
Sbjct: 2 LEDQIEILNLKPFFEVQKTQIIGRNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEG 56
Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVE 259
++ E ++ N + L Y F P E ++ +
Sbjct: 57 ENVSKESWDVLIPTIREDGSQII--VSFNPKNLLDDTYQRFVINPPERCCSVLVNWQDNP 114
Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYA 316
E + D ++ R GQ P + + I +IE+A+ ++
Sbjct: 115 YFPKELMEDMKQMKERDFELYRHVYEGQ-PVADSDLAIIKPLWIEKAVDAHKKLGFTASG 173
Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
++G D+A EG D F G+++ + +W + ++
Sbjct: 174 RKVVGFDVADEGIDANANCFAHGSVVLQVDEWRGDDVIQSAHR 216
>gi|269941618|emb|CBI50024.1| phage protein [Staphylococcus aureus subsp. aureus TW20]
Length = 599
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/302 (16%), Positives = 84/302 (27%), Gaps = 67/302 (22%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
A RG+GKT L+A L PG II A +++Q N L ++ LS L HR +
Sbjct: 82 ASRGLGKTFLSAVYCLTRCILYPGTKIIITAPTKSQGINVLEKIENELLSPLIHREIESI 141
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
+ + P + + + D G H + + V DE
Sbjct: 142 NTGNQKPMIAF---------HNGSWIRVVASN------DNARG-HRANLLLV--DEFVKV 183
Query: 204 P-DIINKSILGFFTELNPNRFWIMTS---NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
D+I+ T F R N Y W + + T +
Sbjct: 184 DEDLIDTVFKKMLTSQREPAFLHKAKYKNYPREENTQMYLSSAWMKSHWAYDSMRSFTKQ 243
Query: 260 GIDSGFHEGIISR------------------------------------------YGLDS 277
+ + + S +G
Sbjct: 244 MLKKKSEDDLKSFVCHIPYYTGVMEKLYSHKQMKAEAQAEGFNKMKFAMEMEAVWWGETE 303
Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG---DKTVV 334
F ++ F P + +A I + ++ D+A GG D +V
Sbjct: 304 SAFFNFNTIDFNRKLSQAFYPKEVLVQADINNPIKEPKEKRLLAVDVARMGGNSNDASVF 363
Query: 335 VF 336
Sbjct: 364 SL 365
>gi|294663744|gb|ADF29298.1| terminase [Pseudomonas phage JG024]
Length = 460
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + I + N WI+ N + + Y F P +D
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWIIF-NPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMS--RE 309
I+ + + I Y D + A I G P+ + I +I A+ ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
+ +G D+A +G D GN+I + +W
Sbjct: 232 LGWEPAGSKRIGFDVADDGDDANATTLMHGNVIMEVDEWDG 272
>gi|291334706|gb|ADD94352.1| hypothetical protein Ddes_0719 [uncultured phage
MedDCM-OCT-S04-C890]
Length = 311
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 26/177 (14%)
Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
+S IA + Q K+ W + ++ + +P+ + E + P+G LL
Sbjct: 1 MSKLKNPRFAYIAPTFKQAKSIAWDYMKQFTAKIPNTKFNETELRVDLPNGSRITLLG-- 58
Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220
E D G + DE + + + I ++
Sbjct: 59 ----------------AENSDGLRGIYLDGC---VIDEYANIDGKLFAEIIRPALSDRKG 99
Query: 221 NRFWIMTSNTRRLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
+ + +N FYD+ EDW Y+ + +D E G
Sbjct: 100 --YCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGE 154
>gi|190890121|ref|YP_001976663.1| hypothetical protein RHECIAT_CH0000492 [Rhizobium etli CIAT 652]
gi|190695400|gb|ACE89485.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 465
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/276 (15%), Positives = 85/276 (30%), Gaps = 27/276 (9%)
Query: 85 GRGIGKTTLNAWMMLWLISTRPG---------MSIICIANSETQLKNTLWAEVSKWLSML 135
GR GK+ A + ++L +++ IA Q + L V L +
Sbjct: 68 GRRGGKSFTMALIAVFLACFFDYRQYLAPGERATVLVIATDRRQARVIL-RYVRAMLDNI 126
Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
P +Q++ + +L + + R Y+ +
Sbjct: 127 P-----LLQAMVERDTADSFDLDNSTTIEVGTASFRSTRGYT------YAAVLCDELAFW 175
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
D+A+ I +I + PN + S+ G +D F +
Sbjct: 176 RTDDAAEPDYAILDAIRPGMASI-PNSMLLCASSPHARRGALWDAFKRFWGKDDAPLVWR 234
Query: 256 RTVEGIDSGFHEGII-SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
++ + ++ D A E +F + ++ F+ +E+ +SR +
Sbjct: 235 AATREMNPTISQSVVDRALERDHASAMAEYGAEF-RSDIEQFVNIEVVEDCVSRGVYERA 293
Query: 315 YAPLI---MGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
P I D +G D + +I D
Sbjct: 294 PLPNIRYRAFVDPSGGSNDSMTLAIGHKEGERNILD 329
>gi|198242430|ref|YP_002214959.1| hypothetical protein SeD_A1100 [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|193876434|gb|ACF24836.1| ORF11 [Salmonella enterica subsp. enterica serovar Dublin]
gi|197936946|gb|ACH74279.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|326622711|gb|EGE29056.1| hypothetical protein SD3246_1075 [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 423
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/252 (18%), Positives = 79/252 (31%), Gaps = 38/252 (15%)
Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT-LNAWMMLWLISTRPGMSIICIANS 116
+E + H +P K I AGR GKTT L W M + A S
Sbjct: 6 VIEFLPFHAGQKKIYRSPAKRKV-IRAGRRFGKTTMLEQAGGNWAA---RQMRVGWFAPS 61
Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
L LP + S + + + +G + +
Sbjct: 62 YKIL--------------LPSFKTIRDLLKPITISSSKTDSIIELIGGGLVEF------W 101
Query: 177 SEERPDTFVGPHNTHGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
+ + PD G + + DE S G DI ++I + + + +M +
Sbjct: 102 TLDNPD--AGRSRKYHKVII-DEGSLVKKGMRDIWEQAIEPTLLDFDGDA--VMAGTPKG 156
Query: 233 L--NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
+ +FY N W+ + T I+ II G V + E +F
Sbjct: 157 VDDENFFYQACNDKSMGWEEHHAPTAANPTINPAALARIID--GRPPLVVQQEYNAEFVD 214
Query: 291 QEVNNFIPHNYI 302
NF +++
Sbjct: 215 WRGQNFFKLDWL 226
>gi|291334530|gb|ADD94183.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C1201]
gi|291334650|gb|ADD94297.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C695]
Length = 223
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 26/177 (14%)
Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
+ IA + Q K+ W + ++ +P + E + P+G LL
Sbjct: 1 MCPHKNPRFAYIAPTFKQAKSIAWDYMKQFTDKIPSTKFNETELRVDLPNGARITLLG-- 58
Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220
E D G + DE + + + I ++
Sbjct: 59 ----------------AENSDGLRGIYLDGC---VIDEYANIDGKLFAEIIRPALSDRKG 99
Query: 221 NRFWIMTSNTRRLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
+ + +N FYD+ EDW Y+ + +D + G
Sbjct: 100 --YCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASETKIVDQEELDKAKEVMGE 154
>gi|221196218|ref|ZP_03569265.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
gi|221202891|ref|ZP_03575910.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
gi|221176825|gb|EEE09253.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
gi|221182772|gb|EEE15172.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
Length = 424
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/243 (13%), Positives = 70/243 (28%), Gaps = 37/243 (15%)
Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTL-NAWMMLWLISTRPGMSIICIANSETQLKNT 123
+ + + + I GR GKTTL W G+ + +
Sbjct: 12 AKQAEIGRAFNESRRVVIRCGRRFGKTTLLERCASKWA---YNGLKVGWFGPTYK----- 63
Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
L++ ++ ++ +++E + G + +T+ D
Sbjct: 64 --------LNLPTYKRILRTVQPVVYSKSKIDQVIELNSGGCIEFWTL---------QDE 106
Query: 184 FVGPHNTHGMAVFNDEASGTPD---IINK-SILGFFTELNPNRFWIMTSNTR--RLNGWF 237
G + + DE S P I + +I + + M + +F
Sbjct: 107 DAGRSRFYDRVII-DEGSLVPKGLRSIWEQAIAPTLLDRKGHAI--MAGTPKGIDPENFF 163
Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
Y+ W+ + T + +D + Y + V + E L F F
Sbjct: 164 YEACTDKTLGWREFHAPTASNPMLDPEAVARLKDEY--PALVYQQEYLADFVDWNGAAFF 221
Query: 298 PHN 300
Sbjct: 222 SEE 224
>gi|291334416|gb|ADD94071.1| hypothetical protein GobsU_33659 [uncultured phage
MedDCM-OCT-S04-C1035]
gi|291334470|gb|ADD94124.1| hypothetical protein GobsU_33659 [uncultured phage
MedDCM-OCT-S04-C1161]
Length = 223
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 26/177 (14%)
Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
+S IA + Q K+ W + ++ + +P+ + E + P+G LL
Sbjct: 1 MSKLKNPRFAYIAPTFKQAKSIAWDYMKQFTAKIPNTKFNETELRVDLPNGSRITLLG-- 58
Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220
E D G + DE + + + I ++
Sbjct: 59 ----------------AENSDGLRGIYLDGC---VIDEYANIDGKLFAEIIRPALSDRKG 99
Query: 221 NRFWIMTSNTRRLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
+ + +N FYD+ EDW Y+ + +D E G
Sbjct: 100 --YCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGE 154
>gi|291336431|gb|ADD95986.1| hypothetical protein Ddes_0719 [uncultured organism
MedDCM-OCT-S04-C1073]
Length = 311
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 52/172 (30%), Gaps = 26/172 (15%)
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
IA + Q K+ W + ++ + +P+ + E + P+G LL
Sbjct: 6 NPRYAYIAPTFKQAKSIAWDYMKQFTAKIPNTKFNETELRVDLPNGSRITLLG------- 58
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWI 225
E D G + DE + + + I ++ + +
Sbjct: 59 -----------AENSDGLRGIYLDGC---VIDEYANIDGKLFAEIIRPALSDRKG--YCV 102
Query: 226 MTSNTRRLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
+N FYD+ EDW Y+ + +D E G
Sbjct: 103 FIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGE 154
>gi|262276634|ref|ZP_06054439.1| P-loop protein [alpha proteobacterium HIMB114]
gi|262225214|gb|EEY75661.1| P-loop protein [alpha proteobacterium HIMB114]
Length = 409
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 30/251 (11%)
Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
F+ I+ GR GKT L +L I ++ + K +W ++ K + L
Sbjct: 17 FRVLIT-GRRFGKTHLCLVEILRQARHCDNGKIFYVSPTYRMSKEIMWKQIKKLVKEL-- 73
Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
W + E + I + +++ D G +
Sbjct: 74 --------------RWDKYINETELTIVLVNNCQISLKGADKSADNLRGV---GLNFLVL 116
Query: 198 DEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRYQI 253
DE + P+ + + ++ N + + W YD+F +WK ++
Sbjct: 117 DEFADIPEEAWTEVLRPTISDKYANGKVLFVGTPKGYGNWSYDMFQRGQAGDPEWKSWKY 176
Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID- 312
T ++ E S R E F + + A + + +
Sbjct: 177 TTIEGGQVEPHEIEQAKKDLDARS--FRQEYEASFETYAGVVYYNF---DRAKNVKPVPY 231
Query: 313 DLYAPLIMGCD 323
D A + +G D
Sbjct: 232 DQNAVIHIGMD 242
>gi|57867562|ref|YP_189190.1| prophage, terminase, ATPase subunit [Staphylococcus epidermidis
RP62A]
gi|57638220|gb|AAW55008.1| prophage, terminase, ATPase subunit, putative [Staphylococcus
epidermidis RP62A phage SP-beta]
Length = 599
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/302 (16%), Positives = 84/302 (27%), Gaps = 67/302 (22%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
A RG+GKT L+A L PG II A +++Q N L ++ LS L HR +
Sbjct: 82 ASRGLGKTFLSAVYCLTRCILYPGTKIIITAPTKSQGINVLEKIENELLSPLIHREIESI 141
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
+ + P + + + D G H + + V DE
Sbjct: 142 NTGNQKPMIAF---------HNGSWIRVVASN------DNARG-HRANLLLV--DEFVKV 183
Query: 204 P-DIINKSILGFFTELNPNRFWIMTS---NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
D+I+ T F R N Y W + + T +
Sbjct: 184 DEDLIDTVFKKMLTSQREPAFLHKAKYKNYPREENTQMYLSSAWMKSHWAYDSMRSFTRQ 243
Query: 260 GIDSGFHEGIISR------------------------------------------YGLDS 277
+ + + S +G
Sbjct: 244 MLKKKSEDDLKSFVCHIPYYTGVMEKLYSHKQMKAEAQAEGFNKMKFAMEMEAVWWGETE 303
Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG---DKTVV 334
F ++ F P + +A I + ++ D+A GG D +V
Sbjct: 304 SAFFNFNTIDFNRKLSQAFYPKEVLVQADINNPIKEPKEKRLLAVDVARMGGNSNDASVF 363
Query: 335 VF 336
Sbjct: 364 SL 365
>gi|218457805|ref|YP_002418810.1| terminase, large subunit [Pseudomonas phage SN]
gi|218379073|emb|CAT99652.1| terminase, large subunit [Pseudomonas phage SN]
Length = 460
Score = 56.3 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + I + N WI+ N + + Y F P +D
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWIIF-NPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMS--RE 309
I+ + + I Y D + A I G P+ + I +I A+ ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
+ +G D+A +G D GN+I + +W
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDG 272
>gi|218148543|ref|YP_002364311.1| terminase, large subunit [Pseudomonas phage 14-1]
gi|218059739|emb|CAU13815.1| terminase, large subunit [Pseudomonas phage 14-1]
Length = 460
Score = 56.3 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + I + N WI+ N + + Y F P +D
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWIIF-NPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMS--RE 309
I+ + + I Y D + A I G P+ + I +I A+ ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
+ +G D+A +G D GN+I + +W
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDG 272
>gi|197261331|ref|YP_002154147.1| putative terminase, large subunit [Pseudomonas phage LBL3]
gi|197244421|emb|CAR31156.1| putative terminase, large subunit [Pseudomonas phage LBL3]
Length = 460
Score = 56.3 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + I + N WI+ N + + Y F P +D
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWIIF-NPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMS--RE 309
I+ + + I Y D + A I G P+ + I +I A+ ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
+ +G D+A +G D GN+I + +W
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDG 272
>gi|218296139|ref|ZP_03496908.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
gi|218243516|gb|EED10045.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
Length = 426
Score = 56.3 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 16/183 (8%)
Query: 186 GPHNTHGMAVFNDEASGTPD---IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
G + +A+ DEA+ P + ++IL + WI ++ R FY+++N
Sbjct: 112 GRGRAYDLAII-DEAAFAPSLARVWEEAILPTLLDR-LGSAWIASTPKGRNA--FYELWN 167
Query: 243 IPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
+ L+D W + + + + + + R EIL ++ E F +
Sbjct: 168 LTLDDPAWAHFHEPSHRNPFLSQEELARMAATMTRE--RYRQEILAEWVDAEGRVF-SED 224
Query: 301 YIEEAMSREAIDDL--YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD--WSAKLIQET 356
+E A+ + +D G D+A V V R G +E + W T
Sbjct: 225 ALEAALLLQGPEDPRPGERYAAGVDLARSQDYTAVAVLRLGAQLELVRVERWRGLSYTLT 284
Query: 357 NQE 359
++
Sbjct: 285 ARK 287
>gi|197261421|ref|YP_002154236.1| putative terminase, large subunit [Pseudomonas phage LMA2]
gi|197244511|emb|CAR31245.1| putative terminase, large subunit [Pseudomonas phage LMA2]
Length = 460
Score = 56.3 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 7/161 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + I + N WI+ N + + Y F P +D
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWIIF-NPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMS--RE 309
I+ + + I Y D + A I G P+ + I +I A+ ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
+ +G D+A +G D GNII + +W
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNIIMEVDEWDG 272
>gi|159044464|ref|YP_001533258.1| hypothetical protein Dshi_1915 [Dinoroseobacter shibae DFL 12]
gi|157912224|gb|ABV93657.1| hypothetical protein Dshi_1915 [Dinoroseobacter shibae DFL 12]
Length = 260
Score = 56.3 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 55/293 (18%), Positives = 95/293 (32%), Gaps = 62/293 (21%)
Query: 36 FPWGIK-------GKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
PW L H+ P WQ+E + A+ GR
Sbjct: 7 IPWAEDLERRLDPVSRLTHWMGHAPDPWQVEAF--------------TTRATEVALRVGR 52
Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
GKT++ A + + P +C+A +E Q K + E+ + ++Q
Sbjct: 53 QSGKTSVLAARAVEELHV-PESLTLCVAPAERQAK-IIAREIGR-----------QLQRT 99
Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----- 201
SL + LE + G + + DT G + + DE +
Sbjct: 100 SLVINRPTQTELEIANGA-----RVIALPSTS---DTIRGFPAVSCLII--DECAFLQGD 149
Query: 202 -GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRTV 258
G D+I S+L TE +S N +F +F P + R + +
Sbjct: 150 GGGEDLI-SSVLPMLTEDGQ---VFFSSTPAGKNNYFARLFLDAKPGDGIHRIVVRGTDI 205
Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
+ + E + R EIL + + + + IE+A S+
Sbjct: 206 PRL-ADKVERMRRTLSATK--FRQEILVEM-LADGQAYFDLSIIEQATSKTEK 254
>gi|169633984|ref|YP_001707720.1| putative bacteriophage protein; putative prophage terminase large
subunit [Acinetobacter baumannii SDF]
gi|169152776|emb|CAP01795.1| putative bacteriophage protein; putative prophage terminase large
subunit [Acinetobacter baumannii]
Length = 552
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 29/245 (11%)
Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
K+ M + L P G+ ++ + M I + T + + G
Sbjct: 155 FHKFRDMFSKMPQW------LKPKGFVEKVHDNYMRIINPDNGATITGEAGDNI----GR 204
Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
M DE + +++ ++ N N I S + F+ +
Sbjct: 205 GGRTTMYFL-DEWAFVEQ--QEAVDAAISQ-NTNVH-IKGSTPNGIGDRFHQ--DRFSGR 257
Query: 248 WKRYQIDTRTVE--GIDSGFHEGIISRYGL------DSDVARIEILGQFPQQEVNNFIPH 299
+ + + R ++ +I + D V E+ + IP
Sbjct: 258 YAVFTMPWRDNPDKNWTVTYNGKVIYPWYEKQLATLDDVVLAQEVDINYAASVEGVLIPS 317
Query: 300 NYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK--LIQE 355
+++ A+ ++ + I G D+A EG DK R G ++ ++ WS K I
Sbjct: 318 TWVQAAIDAHKKLQIEPTGDRIGGLDVADEGKDKNSFAARHGVVMTYLATWSGKGDDIFG 377
Query: 356 TNQEG 360
T Q+
Sbjct: 378 TTQKA 382
>gi|329849103|ref|ZP_08264131.1| phage terminase, large subunit, PBSX family [Asticcacaulis
biprosthecum C19]
gi|328844166|gb|EGF93735.1| phage terminase, large subunit, PBSX family [Asticcacaulis
biprosthecum C19]
Length = 430
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/292 (15%), Positives = 88/292 (30%), Gaps = 31/292 (10%)
Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
+E + + F+ A GRG K+ A ++ PG ++ + +
Sbjct: 24 ILEPIPAYRFLTKKPLGSFRFRAAY-GGRGAAKSWEFANAAIYHSLNTPGARVVFVREIQ 82
Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
L ++ + V L F + H AE+L + +
Sbjct: 83 GSLADSAFTLVRNRLEAYGLEGAFRQANGRFHHVENGAEILFLGL-------------WR 129
Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN--TRRLNG 235
+P+ +EAS ++ + W + +
Sbjct: 130 GNKPEGIKSL--EGATLTIWEEASEGRQRSLDVLIPTVLRTPQSELWCLWNPMLPTDPVD 187
Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL----GQFPQQ 291
F+ P + I R + F E + + LD + G +
Sbjct: 188 RFFRGDVEPQK-----TICRRVNWDSNPHFPEALREQMALDRKKDPLRAAWIWDGAYMPS 242
Query: 292 EVNNFIPHNYIEEAM--SREAIDDLYAPLIMGCDIAGEGGDKT--VVVFRRG 339
N ++ A R+ + + +++G D AG GGD+ VV R G
Sbjct: 243 AQNALWTRELLDRAWVQGRDKVMEAVGRVVVGVDPAGGGGDEVGIVVAGRYG 294
>gi|241763591|ref|ZP_04761642.1| phage terminase large subunit [Acidovorax delafieldii 2AN]
gi|241367184|gb|EER61538.1| phage terminase large subunit [Acidovorax delafieldii 2AN]
Length = 521
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 284 ILGQFPQQEVN---NFIPHNYIEEAMSRE-AIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
+ G F + IP +++ A +R D ++G D A G DKT V R
Sbjct: 276 LRGDFSAGAADPAWQLIPTEWVKAAQARWQPRQDKGPMTVLGLDPARGGTDKTSVARRHD 335
>gi|300907068|ref|ZP_07124735.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
84-1]
gi|301304068|ref|ZP_07210185.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
124-1]
gi|300401186|gb|EFJ84724.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
84-1]
gi|300840675|gb|EFK68435.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
124-1]
gi|315257729|gb|EFU37697.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
85-1]
Length = 440
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P ED +
Sbjct: 96 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 153
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D D + G P+ + + I ++IE A+ +
Sbjct: 154 INYDENPFLSDTMLKVIEAAKRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKV 212
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+ +G D+A G DK V+R G+++ +W AK
Sbjct: 213 LNFEPSGRKRIGFDVADSGADKCANVYRHGSVVYWADEWKAKE 255
>gi|294085818|ref|YP_003552578.1| hypothetical protein SAR116_2251 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665393|gb|ADE40494.1| protein of unknown function DUF264 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 454
Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 52/253 (20%), Positives = 86/253 (33%), Gaps = 25/253 (9%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
AGRG GKT A + WL + I + + + + S LS+ P+
Sbjct: 82 AGRGFGKTRAGAEWIRWLAQSGRARRIALVGETFDDARQVMVEGASGILSVCPN------ 135
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
W R YS + P+ GP +G + DE +
Sbjct: 136 ---------WARPAWRAGQRTLIWPSGTIARCYSADDPEQLRGPEFDYG---WADEIAKW 183
Query: 204 PDI-INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT-VEGI 261
+++ + + I T+ R + W D+ ED Q +R +
Sbjct: 184 RYPSAWDNLMLAL-RIGKSPQCIATTTPRPVR-WLADLA--AAEDTVLVQGASRENAANL 239
Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321
F + R+G DS +AR E+ G + N I + +++G
Sbjct: 240 SPAFMAAMHRRFG-DSYLARQELEGIMMSNLPDALWCRNDILRLHRPMPKRHRFIRIVIG 298
Query: 322 CDIAGEGGDKTVV 334
D A GGD+T +
Sbjct: 299 VDPAMGGGDETGI 311
>gi|145638997|ref|ZP_01794605.1| terminase large subunit-like protein [Haemophilus influenzae
PittII]
gi|145271969|gb|EDK11878.1| terminase large subunit-like protein [Haemophilus influenzae
PittII]
Length = 379
Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 7/170 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
V+ +E ++ E ++ N + + Y F P E K
Sbjct: 50 VVWVEEGENVSKESWDILIPTIREDGSQII--VSFNPKNILDDTYQRFVIHPPERCKSVL 107
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--RE 309
++ + E + D ++ R G+ P + + I +IE A+ +
Sbjct: 108 VNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGE-PVADSDLAIIKPVWIESAVDAHLK 166
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
+G D+A EG D F G+++ + W + ++
Sbjct: 167 LGFTTKGMKKVGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANR 216
>gi|194434997|ref|ZP_03067239.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae
1012]
gi|194416779|gb|EDX32906.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae
1012]
gi|323166781|gb|EFZ52535.1| phage terminase, large subunit, PBSX family [Shigella sonnei 53G]
Length = 447
Score = 53.6 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P E +
Sbjct: 102 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 159
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D D + G P+ + + I ++IE A+ +
Sbjct: 160 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 218
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+ +G D+A G DK V+R G+++ +W AK
Sbjct: 219 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 261
>gi|188492395|ref|ZP_02999665.1| phage terminase large subunit [Escherichia coli 53638]
gi|188487594|gb|EDU62697.1| phage terminase large subunit [Escherichia coli 53638]
Length = 467
Score = 53.6 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P E +
Sbjct: 122 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 179
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D D + G P+ + + I ++IE A+ +
Sbjct: 180 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 238
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+ +G D+A G DK V+R G+++ +W AK
Sbjct: 239 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 281
>gi|16760783|ref|NP_456400.1| bacteriophage protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|25512494|pir||AE0735 probable bacteriophage protein STY2040 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503080|emb|CAD05583.1| putative bacteriophage protein [Salmonella enterica subsp. enterica
serovar Typhi]
Length = 467
Score = 53.6 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P E +
Sbjct: 122 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 179
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D D + G P+ + + I ++IE A+ +
Sbjct: 180 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 238
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+ +G D+A G DK V+R G+++ +W AK
Sbjct: 239 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 281
>gi|74311301|ref|YP_309720.1| putative bacteriophage protein [Shigella sonnei Ss046]
gi|73854778|gb|AAZ87485.1| putative bacteriophage protein [Shigella sonnei Ss046]
Length = 473
Score = 53.6 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P E +
Sbjct: 128 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 185
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D D + G P+ + + I ++IE A+ +
Sbjct: 186 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 244
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+ +G D+A G DK V+R G+++ +W AK
Sbjct: 245 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 287
>gi|324012808|gb|EGB82027.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
60-1]
Length = 441
Score = 53.6 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P E +
Sbjct: 96 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 153
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D D + G P+ + + I ++IE A+ +
Sbjct: 154 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 212
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+ +G D+A G DK V+R G+++ +W AK
Sbjct: 213 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 255
>gi|323175059|gb|EFZ60673.1| phage terminase large subunit [Escherichia coli LT-68]
Length = 399
Score = 53.2 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P E +
Sbjct: 54 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 111
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D D + G P+ + + I ++IE A+ +
Sbjct: 112 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 170
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+ +G D+A G DK V+R G+++ +W AK
Sbjct: 171 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 213
>gi|163735142|ref|ZP_02142578.1| hypothetical protein RLO149_23000 [Roseobacter litoralis Och 149]
gi|161391600|gb|EDQ15933.1| hypothetical protein RLO149_23000 [Roseobacter litoralis Och 149]
Length = 267
Score = 53.2 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/193 (13%), Positives = 63/193 (32%), Gaps = 35/193 (18%)
Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
P WQ M + + + + AG+ + K P +
Sbjct: 30 PDPWQRSLMNSTSDVIMVLASRRSGKSTTVGVMAGQELAK---------------PDHQV 74
Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
I ++ + Q L+A+++ F + ++L + E + S +
Sbjct: 75 IILSPTLAQ-SQLLFAKIA-----------FTWEKMALPIETRRRTMTELHLKNGS---S 119
Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
+ C ++ + G +G+ DEA+ PD + + + N + +
Sbjct: 120 VVCVPAGQDG-EGARGYGVKNGILA-FDEAAFIPDKVFGA---TLSIAEDNAKTVFITTP 174
Query: 231 RRLNGWFYDIFNI 243
+G Y+++
Sbjct: 175 GGKSGKAYEMWTN 187
>gi|119869106|ref|YP_939058.1| phage terminase [Mycobacterium sp. KMS]
gi|119695195|gb|ABL92268.1| phage Terminase [Mycobacterium sp. KMS]
Length = 489
Score = 53.2 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 50/326 (15%), Positives = 85/326 (26%), Gaps = 71/326 (21%)
Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
KG +P WQ++ + V V P RG GKTTL+A ++L+
Sbjct: 41 KGTGAREVFRPREWQMDIVRDVLDSGARTVGLMMP----------RGQGKTTLSAAILLY 90
Query: 101 LISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
+ TR G +++ A E Q S+ +Q S Y +
Sbjct: 91 IFFTRGEGANVVLFAVDERQ------------ASLAFRVAARMVQLSEDLSSRCYVYADK 138
Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
+ + Y + + + G +A DEA + +
Sbjct: 139 LVLPLTDSTYQVMPASAA-----AAEGL---DYVACLCDEAGVINRDVFEVAQLA-QGKR 189
Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD- 278
I D L + D + F +G D
Sbjct: 190 ERSVLIAIGTPGPDPN---DQVLADLRAYAAEHPD--DKSLVWREFSAAGFEDHGADCPH 244
Query: 279 ------------------------------VARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
R + QF F+P E +
Sbjct: 245 CWELANPALDDFLHRDALHALLPPKTREATFRRARLC-QFSTDTDGAFLPAGVWEGLSTS 303
Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVV 334
+ +++ D + G D T +
Sbjct: 304 SPVP-PGVDVVLALDGSYNG-DTTAL 327
>gi|326804661|ref|YP_004327532.1| Gp17 terminase subunit for DNA packaging, nuclease and ATPase
[Salmonella phage Vi01]
gi|301795311|emb|CBW38029.1| Gp17 terminase subunit for DNA packaging, nuclease and ATPase
[Salmonella phage Vi01]
Length = 736
Score = 53.2 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 48/269 (17%), Positives = 83/269 (30%), Gaps = 51/269 (18%)
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
TT+ A +LW I +AN E Q L + K LP +
Sbjct: 269 TTVVAAFLLWYAMFHSDKEIAVLANKEKQAIEIL-DRIRKAYQDLPFFLQQGCEKFGSTL 327
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IIN 208
+ E + + +I R+ S ++ DE + +
Sbjct: 328 IEF--ENGSKIYAYATSSDSIRGRSVS----------------LLYVDEVAFIENDFEFW 369
Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI--PLE-DWKRYQIDT---RTVEGI- 261
+S + +R I+TS + G FYDI P + + + V
Sbjct: 370 ESTFPAIASADTSR-CILTSTPKGQRGLFYDIVTKADPRHPQYNDFHLTEVPWYKVPAYT 428
Query: 262 -DSGFHEGIISRYGLDSDVARIEILGQFP---QQEVNNFIPHNYIEEAMSREAIDD---- 313
D + +R G +F + V + IP +++ S+ +
Sbjct: 429 KDPDWETKQRARLGD------ARFDQEFGIKFRGSVGSLIPAKCLDKMTSKLYREPNEFT 482
Query: 314 ----LYAPLIMGCDIAGEG----GDKTVV 334
Y P + IA G GD +V+
Sbjct: 483 KIYKEYDPQRIYFGIADTGKGVEGDYSVL 511
>gi|326783331|ref|YP_004323723.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn33]
gi|310005278|gb|ADO99667.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn33]
Length = 549
Score = 53.2 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 43/267 (16%), Positives = 86/267 (32%), Gaps = 43/267 (16%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GK+T+ +LW + P +++ +AN E+ L + +Q L
Sbjct: 85 GKSTIVTAYLLWYVLFNPNVNVAILANKAA-----TAREMLGRLQLSYENLPKWLQQGIL 139
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
+ EL S + + R S +F DE + P+ I
Sbjct: 140 QWNRGSLELENGSKILAASTSASAVRGMSFN--------------VIFLDEFAFVPNHIA 185
Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
S+ + + I+ S +N FY +++ ++ ++ V G
Sbjct: 186 DQFFSSVYPTVSS-GKSTKVIIISTPHGMN-MFYKLWHDAEQGKNEYLPTEVHWSQVPGR 243
Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP------HNYIEEAMSRE-----A 310
D+ + E I ++E +F V+ I Y++ +
Sbjct: 244 DAAWKEQTIKNTSEQQ--FKVEFECEF-LGSVDTLISPSKLRTMPYVDPVAQNKGLAIYE 300
Query: 311 IDDLYAPLIMGCDIAGE-GGDKTVVVF 336
+ I+ D++ G D + V
Sbjct: 301 RVEAEHNYIITVDVSRGIGNDYSAFVV 327
>gi|293396491|ref|ZP_06640767.1| phage terminase large subunit [Serratia odorifera DSM 4582]
gi|291420755|gb|EFE94008.1| phage terminase large subunit [Serratia odorifera DSM 4582]
Length = 430
Score = 53.2 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++N+EA + + + + W + N R + + F P D +
Sbjct: 80 VLWNEEAHAMTEAQWEVLEPTIRKEGSEC-WFLF-NPRLTTDFVWRNFVVAPPPDTLVRK 137
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--RE 309
I+ + I + D+++ LG P+ + + I ++IE A+ +
Sbjct: 138 INYDENPFLSRTIMNVIEAAKARDAEMFEHVYLGM-PRTDDDEAIIKLSWIEAAVDAHKA 196
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+ +G D+A G DK V+ G++ +W A+
Sbjct: 197 LNIEPAGHRRVGFDVADSGADKCANVYAHGSVALWADEWKARE 239
>gi|282599341|ref|YP_003358653.1| Gp17 terminase DNA packaging enzyme large subunit [Shigella phage
phiSboM-AG3]
gi|226973647|gb|ACO94400.1| Gp17 terminase DNA packaging enzyme large subunit [Shigella phage
phiSboM-AG3]
Length = 736
Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 53/297 (17%), Positives = 92/297 (30%), Gaps = 57/297 (19%)
Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
TT+ A +LW I +AN E Q L + K LP +
Sbjct: 269 TTVVAAFLLWYAMFHSDKEIAVLANKEKQAIEIL-DRIRKAYQDLPFFLQQGCEKFGSTL 327
Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IIN 208
+ E + + +I R+ S ++ DE + +
Sbjct: 328 IEF--ENGSKIYAYATSSDSIRGRSVS----------------LLYVDEVAFIENDFEFW 369
Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP------LEDWKRYQIDTRTVEGI- 261
+S + +R I+TS + G FYDI D+K ++ V
Sbjct: 370 ESTFPAIASADTSR-CILTSTPKGQRGLFYDIVTKANPEHPQYNDFKLTEVPWYRVPTYT 428
Query: 262 -DSGFHEGIISRYGLDSDVARIEILGQFP---QQEVNNFIPHNYIEEAMSREAIDD---- 313
D + ++ G +F + V + IP +++ S+ +
Sbjct: 429 KDPNWESKQRAKLGD------ARFDQEFGIKFRGSVGSLIPAKCLDKMTSKLYQEPNEFT 482
Query: 314 ----LYAPLIMGCDIAGEG----GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
Y P + IA G GD +V+ I I D+ K+ + P
Sbjct: 483 KIYHDYDPKRIYMGIADTGKGVEGDYSVLT------ILDITDYPHKIAAKYRNNTIP 533
>gi|332091158|gb|EGI96248.1| phage terminase large subunit [Shigella dysenteriae 155-74]
Length = 346
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P E +
Sbjct: 1 MLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 58
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D D + G P+ + + I ++IE A+ +
Sbjct: 59 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 117
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+ +G D+A G DK V+R G+++ +W AK
Sbjct: 118 LNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 160
>gi|262067933|ref|ZP_06027545.1| putative protein splicing site [Fusobacterium periodonticum ATCC
33693]
gi|291378336|gb|EFE85854.1| putative protein splicing site [Fusobacterium periodonticum ATCC
33693]
Length = 832
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/254 (15%), Positives = 79/254 (31%), Gaps = 32/254 (12%)
Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
+L P II ANS L ++ +R F + Y
Sbjct: 353 ILHFAFNNPNKKIIVAANSLN-LITEIF-----------NRMEFLLTGSKSAYKTSYTRK 400
Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
S I + T + + G V+ DEA+ + + ++ F
Sbjct: 401 RSPSEKIVLINGTQINGFTTGTDGSSIRGQSADR---VYIDEAAYVTEQAYQVLM-AFKL 456
Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
NPN +++ S L F + + W+ + + + + + + +
Sbjct: 457 DNPNVVFVVFSTPTALETNFRK-WCLVDPAWREFHYPSSILPNFEENDGPELRNSLTEEG 515
Query: 278 DVARIEILGQFPQQEV---------NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE- 327
++E+ +F + + N+ + Y E E I+ + +G D
Sbjct: 516 --YKLEVEAEFSEGDSKVFKTENIKNSLYQYKYCE--FREELINPEKWKITIGVDYNEFK 571
Query: 328 -GGDKTVVVFRRGN 340
G V+ GN
Sbjct: 572 NGSQICVLGLYCGN 585
>gi|99080642|ref|YP_612796.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
gi|99036922|gb|ABF63534.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
Length = 416
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/284 (16%), Positives = 85/284 (29%), Gaps = 24/284 (8%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
G G GKT + + P A + +++T W V +
Sbjct: 27 GGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPTVDE-----------AA 75
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
SL A+ + S + T CR S + P VG + D S
Sbjct: 76 HSLGFTTKVKSADKEVEFYRGRSYYGTTICR--SMDDPGGIVGFKIARALVDEIDILSKD 133
Query: 204 -PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF-YDIFNI-PLEDWKRYQIDTRTVE- 259
+ I+ + P + T F YD F P ++ Q T E
Sbjct: 134 KAQAAWRKIIARMRLVLPGVVNGIGVTTTPEGFRFVYDSFKREPKSNYSMVQASTYENEA 193
Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI-PHNYIEEAMSREAIDDLYAPL 318
+ + ++ Y + + + ++G+F ++ + PL
Sbjct: 194 FLPPDYISTLLEDYPEE--LIKAYLMGEFVNLTSGTVYRSYDRLRH--RSTQSIQPREPL 249
Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA-KLIQETNQEGC 361
+G D G +VV +RG + + + + C
Sbjct: 250 HIGQDF-NVGNMASVVFVQRGEDWHAVDELQGLQDTPHLIEVLC 292
>gi|83943081|ref|ZP_00955541.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36]
gi|83846089|gb|EAP83966.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36]
Length = 259
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 38/222 (17%)
Query: 43 KPLEHF----SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
P+E F +P WQ++ + + SN +GR GK+T +
Sbjct: 20 DPVERFRLAIGEPDAWQVDLLR--------SDPRSNEADRMILALSGRQSGKSTTAGGLG 71
Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
G ++I A S Q L+ + ++ + P Q+ + +
Sbjct: 72 --YDDFSRGKTVILTAPSLRQ-STELFRRILEYKNTDPFCPPIVRQTQTELEAHPRHGGR 128
Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
+ + +T T + DEA D + E
Sbjct: 129 IIVVPATDQARGMTADT-------------------IIADEACFLDDDALTAFFPMRKET 169
Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
+ S G+FY+ + +R + +
Sbjct: 170 G---RIFLLSTPNMRQGYFYETWTSAKRV-RRITARSIDIPR 207
>gi|86372240|gb|ABC95184.1| GP17-terminase [Stenotrophomonas phage Smp14]
Length = 536
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/266 (16%), Positives = 85/266 (31%), Gaps = 44/266 (16%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GKTT+ A ++LW I +AN Q + E+ L ++ + MQ
Sbjct: 92 GKTTVVAAILLWYAIFNEEYRIAILANKGDQSR-----EILARLQLMYEELPWFMQVGVS 146
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
+ +L +S + + R S ++ DE + + +
Sbjct: 147 VWNKGNIKLGNRSEVFTAATGGSSIRGKSVN--------------LMYLDEFAFVENDVD 192
Query: 208 -NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR---TVEGIDS 263
S T I+TS +N FY I+ Y + D
Sbjct: 193 FYTSTYPVVTS-GTKTKVIITSTPNGMN-LFYKIWTDSTNGKNNYVHNEAFWHDHPKRDQ 250
Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY-------- 315
+ + + E L +F Q + + +E+ ++ I +L
Sbjct: 251 AWKDEQLRNMSERQ--FEQEFLCKF-QGSSDTLLSPAKLEQLTYQDHIRELGGNRDFKIY 307
Query: 316 ------APLIMGCDIA-GEGGDKTVV 334
A ++ D++ G G D +V+
Sbjct: 308 EDPIKDASYVVTVDVSEGIGKDYSVI 333
>gi|312126991|ref|YP_003991865.1| hypothetical protein Calhy_0759 [Caldicellulosiruptor
hydrothermalis 108]
gi|311777010|gb|ADQ06496.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
108]
Length = 444
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/261 (18%), Positives = 76/261 (29%), Gaps = 34/261 (13%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
AGR GK+T+ ++ +T+ A S Q K + E + +
Sbjct: 54 AGRRFGKSTVTLIDVVHECATKTKQVWYITAPSIDQAK-IYFQEFE---QRAANNSLLDA 109
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
S + L I + + G EA+
Sbjct: 110 LVKDFKWSPFPEITLINGSKILGR--------STSRNGVYLRGKGADGVAIT---EAAFI 158
Query: 204 PDIIN-KSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLED----WKRYQIDTRT 257
D + I + N T + Y +F L D +K +
Sbjct: 159 KDKVYHDVIRAMVLDRNGVLRL----ETTPNGMNYVYKLFQEGLNDSTGYYKSFHATVYD 214
Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI-PHNYIEEAM---SREAIDD 313
E +D E I RIE L +F E ++FI P N + E +
Sbjct: 215 NERLDREELERIRREIPE--LAWRIEYLAEF--VEDDSFIFPWNLLCEVFDDYELKKEPQ 270
Query: 314 LYAPLIMGCDIAGEGGDKTVV 334
+G D+A D TV+
Sbjct: 271 NGHRYSIGVDLAKY-QDYTVI 290
>gi|114320225|ref|YP_741908.1| hypothetical protein Mlg_1066 [Alkalilimnicola ehrlichii MLHE-1]
gi|114226619|gb|ABI56418.1| hypothetical protein Mlg_1066 [Alkalilimnicola ehrlichii MLHE-1]
Length = 463
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/322 (13%), Positives = 96/322 (29%), Gaps = 36/322 (11%)
Query: 38 WGIKGKPLEHFSQ-P-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
W L F P + + A+ + + + GK+ A
Sbjct: 24 WAAWRALLSGFYGLPLDDAEAQHWHALTDRESAPQSAHDELWLVVGRRG----GKSNAAA 79
Query: 96 WMMLWLISTRPGMSIIC---IANSE------TQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
+ ++ + + +A + Q ++ + +S + P ++ L
Sbjct: 80 LLAVYEACFKDHRDALAPGEVATTRVMAADRAQARSV-FRYISGLMHANPM-----LERL 133
Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
+ EL +++ T R Y+ F +D+++
Sbjct: 134 IVREDRESIELSNRAVIEVGTASFRTTRGYT------FAAVIADEVAFWRSDDSANPDSE 187
Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
I ++ LN + S+ G ++ + + ++
Sbjct: 188 IIAAVRPGLATLNGKLIAL--SSPYARRGELWENYRRHYGKASPILVAQAPSRTMNPSLP 245
Query: 267 EGII-SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI---MGC 322
E ++ D A E L +F + +V F+ +E A ++ Y +
Sbjct: 246 ERVVTEAMERDPASAAAEYLAEF-RTDVETFLQREVVEAATRPTPLELPYNKRVTYTAFV 304
Query: 323 DIAGEGGDK--TVVVFRRGNII 342
D AG G D+ + R G +
Sbjct: 305 DPAGGGADEFTAAIGHREGERV 326
>gi|78212008|ref|YP_380787.1| hypothetical protein Syncc9605_0456 [Synechococcus sp. CC9605]
gi|78196467|gb|ABB34232.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 414
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/254 (15%), Positives = 90/254 (35%), Gaps = 39/254 (15%)
Query: 82 ISAGRGIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
+++GR GKT + W++ + T G + +A + Q K W ++
Sbjct: 25 VNSGRRFGKTRMALTWLLEGALLT-SGSRMWFLAPTRVQAKQIAWRDLK----------- 72
Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
+ P W +++ E ++ I+ ++ + + + D+ G DE
Sbjct: 73 ------EMVPGSWASQVRESTLTIELRNGSHI-QLAGADYADSLRGQRADR---FAIDEY 122
Query: 201 SGTPDI--INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWKRYQIDTR 256
D+ + ++ L + + I +S + +++ E W R+ +
Sbjct: 123 CYIRDLQEMWQAALLPMLGTSDDGSVIFSSTPAGGGTFSAELWERAETAEGWARWNFPSV 182
Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL-- 314
+ + E +D + R E G + + + A +++ I D
Sbjct: 183 AGGWVKPEYVEQARQT--MDPSLWRQEFFG-----SIESL--LGAVYPAFNQQNISDTVD 233
Query: 315 -YAPLIMGCDIAGE 327
PL++GCD
Sbjct: 234 NGGPLLVGCDFNRS 247
>gi|284008456|emb|CBA74928.1| phage terminase large subunit [Arsenophonus nasoniae]
Length = 477
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/310 (14%), Positives = 80/310 (25%), Gaps = 73/310 (23%)
Query: 84 AGRGIGKTTLNAWMMLW--------LISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
GRG KT A + L + R M+ I E + L AE+
Sbjct: 21 GGRGGMKTVSFAKIALITASINKRRFLCLREFMNSI-----EDSVHAVLQAEIETLRLQN 75
Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
R Y +L I SKH
Sbjct: 76 RFRILDNCIKGINDSIFKYGQLARNIASIKSKHDFDVA---------------------- 113
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------- 247
+ +EA + ++ + W N +G Y F P +D
Sbjct: 114 WVEEAETVSEKSLDILIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKDIIDDKGYY 171
Query: 248 ------------WKRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
+ E + ++ + YG + D
Sbjct: 172 EDDDLYVGKVSYLDNPWLPEELKNDAEKMKRDNYKKWLHVYGGECDANY----------- 220
Query: 293 VNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
+ I +++ A+ + ++ D A G D+ + R G ++E WS
Sbjct: 221 DDAIIQPEWVDAAIDAHIKLGFKPKGIRVITFDPADSGQDEKALSKRYGVLVEDCVSWSE 280
Query: 351 KLIQETNQEG 360
+ + +
Sbjct: 281 GDVADATIKA 290
>gi|103487487|ref|YP_617048.1| hypothetical protein Sala_2004 [Sphingopyxis alaskensis RB2256]
gi|98977564|gb|ABF53715.1| protein of unknown function DUF264 [Sphingopyxis alaskensis RB2256]
Length = 436
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 53/264 (20%), Positives = 87/264 (32%), Gaps = 31/264 (11%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
AGRG GKT A + T PG I +A S L E
Sbjct: 56 AGRGFGKTRTGAEWVRAFAETTPGARIALVAAS--------------LLEARQVMVEGES 101
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
L++ P E E S+ + YS PD+ GP + A + DE +
Sbjct: 102 GLLAIAPDHLRPE-YESSLRRLTWPNGAVATLYSAVEPDSLRGPEHD---AAWCDEIAKW 157
Query: 204 P--DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
P + ++ T + + T+ R + I + + R
Sbjct: 158 PKGEAAWDNL--MLTMRIGARPQVVATTTPRCVPLVRRLIQERGVATTRGRTASNR--RN 213
Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
+ + + + YG + + R E+ G+ + + IE +A +++
Sbjct: 214 LSVQWLATMDAIYG-GTRLGRQELDGELLEDVEDALWTRALIERCRVDAGSIGKFARVVI 272
Query: 321 GCD-IAGEGGDKTVVV----FRRG 339
G D A GGD +V R G
Sbjct: 273 GVDPPASAGGDACGIVVAALLRDG 296
>gi|61806303|ref|YP_214662.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM4]
gi|61563847|gb|AAX46902.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM4]
Length = 550
Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/345 (14%), Positives = 107/345 (31%), Gaps = 59/345 (17%)
Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
++++ E + A+ + F +R P + ++ +Q + + H +
Sbjct: 24 TKKQVAEYMKCAQDPVYFIRKYIRIVSLDEGVIPFDMYN----FQEDMVTKFHQHRFNIA 79
Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
+ GK+T+ +LW + +++ +AN E+
Sbjct: 80 KLPRQS------------GKSTIVTAYLLWYVLFNANVNVAILANKAP-----TAREMLG 122
Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
L + MQ L + EL S + S R S
Sbjct: 123 RLQLSYENLPKWMQQGILGWNKGSLELENGSKILASSTSASAVRGMSFN----------- 171
Query: 191 HGMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---I 243
+F DE + P+ I S+ + + I+ S +N FY +++
Sbjct: 172 ---IIFLDEFAFVPNHIAEQFFASVYPTISS-GKSTKVIIISTPHGMN-QFYKLWHDAER 226
Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
++ ++ V G D + + I R+E +F V+ I + +
Sbjct: 227 GANNYVATEVHWSQVPGRDDKWKQQTIENTSE--AQFRVEFECEF-LGSVDTLITPSKLR 283
Query: 304 EAMSREAIDD-----------LYAPLIMGCDIAGE-GGDKTVVVF 336
++ I + I+ D++ G D +
Sbjct: 284 IMPYKDPIQENRGLAVYEHVQENHNYIITVDVSRGVGNDYSAFCV 328
>gi|68249883|ref|YP_248995.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
gi|68058082|gb|AAX88335.1| predicted phage terminase large subunit [Haemophilus influenzae
86-028NP]
Length = 438
Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/273 (14%), Positives = 100/273 (36%), Gaps = 23/273 (8%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A +++ I+ R + + C + + +++ ++ + L + FE+
Sbjct: 12 GGRGSGKSWGVAQLLI-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEEFEV 70
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q +++ +E + + + + + G V+ +EA
Sbjct: 71 QRNAIYCLKTGSEFMFYGIKNNP------------NKIKSLEGID-----LVWIEEAENV 113
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
+ ++ + W+ + L+ + P ++ +I+
Sbjct: 114 SNESWDILIPTIRKERSE-IWVTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFPE 172
Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ D ++ R LG+ P + + I +IE A+ ++ I+
Sbjct: 173 TLRLEMEECKERDYELYRHIWLGE-PVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 231
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
G D+A +G D F G+++ + +W + +
Sbjct: 232 GFDVADDGVDSNANAFVHGSVVLRVDEWRGEDV 264
>gi|218296727|ref|ZP_03497433.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
gi|218242816|gb|EED09350.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
Length = 425
Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/260 (17%), Positives = 87/260 (33%), Gaps = 22/260 (8%)
Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
GK+ G + + ++ E Q S+ L+ H M+ +
Sbjct: 28 TGKSFALTLEAALHAVEHRGSTWVLLSAGERQ---------SRELAEKAKAHLDAMKQVG 78
Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTPD 205
+ E E ++ + ++ + P T G V DE + +
Sbjct: 79 TLMESRFFEGGESVTQLEIRLPNLSRLIFLPANPRTARGYTGN----VVLDEFAFHQDSE 134
Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
I ++ T P+ + S G F++++ W R+++
Sbjct: 135 AIWAAMYPIITRR-PDLKIRVMSTPNGPRGKFWELWEKGGPAWSRHKVTIYDAVAQGLPV 193
Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP--LIMGCD 323
+ D + + E L +F E F+P + I EA +RE + P +G D
Sbjct: 194 DPEELRAGLADDFIWQQEYLCEFLSAEE-AFLPWSLILEAEAREDPRGPWNPDQAYLGVD 252
Query: 324 IAGEGGDKTVVVF--RRGNI 341
+ D TV V R G++
Sbjct: 253 VGRH-RDLTVFVVLERVGDV 271
>gi|319775727|ref|YP_004138215.1| phage terminase large subunit [Haemophilus influenzae F3047]
gi|319896735|ref|YP_004134928.1| phage terminase large subunit [Haemophilus influenzae F3031]
gi|317432237|emb|CBY80589.1| predicted phage terminase large subunit [Haemophilus influenzae
F3031]
gi|317450318|emb|CBY86534.1| predicted phage terminase large subunit [Haemophilus influenzae
F3047]
Length = 449
Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/273 (14%), Positives = 100/273 (36%), Gaps = 23/273 (8%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A +++ I+ R + + C + + +++ ++ + L + FE+
Sbjct: 23 GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEDFEV 81
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q +++ +E + + + + + G V+ +EA
Sbjct: 82 QRNAIYCLKTGSEFMFYGIKNNP------------NKIKSLEGID-----LVWIEEAENV 124
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
+ ++ + W+ + L+ + P ++ +I+
Sbjct: 125 SNESWDILIPTIRKERSE-IWVTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFPE 183
Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ D ++ R LG+ P + + I +IE A+ ++ I+
Sbjct: 184 TLRLEMEECKERDYELYRHIWLGE-PVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 242
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
G D+A +G D F G+++ + +W + +
Sbjct: 243 GFDVADDGVDSNANAFVHGSVVLRVDEWRGEDV 275
>gi|326782863|ref|YP_004323261.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-RSM4]
gi|310004122|gb|ADO98516.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-RSM4]
Length = 547
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/274 (16%), Positives = 86/274 (31%), Gaps = 57/274 (20%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GK+T+ +LW + +++ +AN E+ + L + MQ L
Sbjct: 83 GKSTIVTAYLLWYVLFNANVNVAILANKAA-----TAREMLQRLQLSYENLPNWMQQGIL 137
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
+ EL S + + R S +F DE + P+ I
Sbjct: 138 QWNRGSLELENGSKIMAASTSASAVRGMSFN--------------VIFLDEFAFIPNHIA 183
Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
S+ + + I+ S +N FY +++ ++ ++ V G
Sbjct: 184 DQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERGTNEYVPTEVHWSEVPGR 241
Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL--- 318
D + E I R+E +F V+ I A S+ I + P+
Sbjct: 242 DDVWKEQTIKNTSE--SQFRVEFECEF-LGSVDTLI-------APSKLRIMPYHDPITSN 291
Query: 319 ---------------IMGCDIAGE-GGDKTVVVF 336
I+ D++ G D +
Sbjct: 292 RGLAVYEQVIPEHNYIITVDVSRGVGNDYSAFCV 325
>gi|145629819|ref|ZP_01785613.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|148827544|ref|YP_001292297.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG]
gi|144977965|gb|EDJ87753.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|148718786|gb|ABQ99913.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG]
Length = 449
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/273 (14%), Positives = 100/273 (36%), Gaps = 23/273 (8%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A +++ I+ R + + C + + +++ ++ + L + FE+
Sbjct: 23 GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEEFEV 81
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q +++ +E + + + + + G V+ +EA
Sbjct: 82 QRNAIYCLKTGSEFMFYGIKNNP------------NKIKSLEGID-----LVWIEEAENV 124
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
+ ++ + W+ + L+ + P ++ +I+
Sbjct: 125 SNESWDILIPTIRKERSE-IWVTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFPE 183
Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ D ++ R LG+ P + + I +IE A+ ++ I+
Sbjct: 184 TLRLEMEECKERDYELYRHIWLGE-PVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 242
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
G D+A +G D F G+++ + +W + +
Sbjct: 243 GFDVADDGVDSNANAFVHGSVVLRVDEWHGEDV 275
>gi|326784324|ref|YP_004324722.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM5]
gi|310003555|gb|ADO97951.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM5]
Length = 549
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/267 (16%), Positives = 88/267 (32%), Gaps = 47/267 (17%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GK+T+ +LW + P +++ +AN E+ + L + +Q L
Sbjct: 85 GKSTIVTSYLLWYVLFNPNVNVAILANKAA-----TAREMLQRLQLSYENLPKWLQQGIL 139
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
+ EL S + + R S +F DE + P+ I
Sbjct: 140 QWNRGSLELENGSKIMAASTSASAVRGMSFN--------------VIFLDEFAFIPNHIA 185
Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
S+ + + I+ S +N FY +++ ++ ++ V G
Sbjct: 186 DQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERGSNEYVPTEVHWSEVPGR 243
Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE-------------EAMSR 308
D + E I R+E +F V+ I + + A+
Sbjct: 244 DEVWKEQTIKNTSEQQ--FRVEFECEF-LGSVDTLISPSKLRIMPYHEPMNQNRGLAVFE 300
Query: 309 EAIDDLYAPLIMGCDIAGE-GGDKTVV 334
+AI + I+ D++ G D +
Sbjct: 301 QAIPE--HNYILTVDVSRGVGNDYSAF 325
>gi|260583110|ref|ZP_05850891.1| phage terminase large subunit [Haemophilus influenzae NT127]
gi|260093822|gb|EEW77729.1| phage terminase large subunit [Haemophilus influenzae NT127]
Length = 445
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/273 (14%), Positives = 100/273 (36%), Gaps = 23/273 (8%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A +++ I+ R + + C + + +++ ++ + L + FE+
Sbjct: 19 GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEEFEV 77
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q +++ +E + + + + + G V+ +EA
Sbjct: 78 QRNAIYCLKTGSEFMFYGIKNNP------------NKIKSLEGID-----LVWIEEAENV 120
Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
+ ++ + W+ + L+ + P ++ +I+
Sbjct: 121 SNESWDILIPTIRKERSE-IWVTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFPE 179
Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ D ++ R LG+ P + + I +IE A+ ++ I+
Sbjct: 180 TLRLEMEECKERDYELYRHIWLGE-PVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 238
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
G D+A +G D F G+++ + +W + +
Sbjct: 239 GFDVADDGVDSNANAFVHGSVVLRVDEWHGEDV 271
>gi|326782611|ref|YP_004323017.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SM1]
gi|310002825|gb|ADO97224.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SM1]
Length = 549
Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 43/269 (15%), Positives = 87/269 (32%), Gaps = 47/269 (17%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GK+T+ +LW + +++ +AN E+ + L + +Q L
Sbjct: 85 GKSTIVTSYLLWYVLFNDNVNVAILANKAA-----TAREMLQRLQLSYENLPKWLQQGIL 139
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
+ EL S + + R S +F DE + P+ I
Sbjct: 140 QWNRGSLELENGSKIMAASTSASAVRGMSFN--------------VIFLDEFAFIPNHIA 185
Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
S+ + + I+ S +N FY +++ ++ ++ V G
Sbjct: 186 DQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERGTNEYIPTEVHWSEVPGR 243
Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE-------------EAMSR 308
D + E I R+E +F V+ I + + A+
Sbjct: 244 DDVWKEQTIKNTSEQQ--FRVEFECEF-LGSVDTLISPSKLRIMPYHDPMKENRGLAIFE 300
Query: 309 EAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
++I D ++ D++ G D +
Sbjct: 301 QSIPD--HNYVITVDVSRGVGNDYSAFCV 327
>gi|126011061|ref|YP_001039811.1| TerL-like protein [Burkholderia ambifaria phage BcepF1]
gi|119712637|gb|ABL96858.1| TerL-like protein [Burkholderia ambifaria phage BcepF1]
Length = 459
Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 11/163 (6%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + I W++ N + + Y F P D Q
Sbjct: 115 ILWLEEAQYLTEEQWNVINPTIRREGSQ-IWLIW-NPDQYTDFIYQNFVVNPPADCLSKQ 172
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMSREAI 311
I+ + + I Y D + G P+ I Y+ A+ +A
Sbjct: 173 INWTENPFLSDTMLKVIYDEYQRD-PKLAEHVYGGAPKMGGDKAIIQLQYVLAAI--DAH 229
Query: 312 DDLYAPLI----MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
L + G DIA +G D +V GN++ +W
Sbjct: 230 KKLGWKIEGSKRTGFDIADDGDDANAIVDAIGNVVVWAEEWDG 272
>gi|326783550|ref|YP_004323947.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
Syn19]
gi|310005053|gb|ADO99443.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
Syn19]
Length = 549
Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/267 (14%), Positives = 87/267 (32%), Gaps = 43/267 (16%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GK+T+ +LW + +++ +AN E+ + L + +Q L
Sbjct: 85 GKSTIVTSYLLWYVLFNQNVNVAILANKAA-----TSREMLQRLQLSYENLPKWLQQGIL 139
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
+ EL S + + + R S +F DE + P+ I
Sbjct: 140 QWNRGSLELENGSKIMAASTSSSAVRGMSFN--------------VIFLDEFAFVPNHIA 185
Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
S+ + + I+ S +N FY +++ ++ ++ V G
Sbjct: 186 DQFFSSVYPTISS-GQSTKVIIISTPHGMN-MFYKLWHDAERSKNEYIPTEVHWSEVPGR 243
Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE-----------EAMSREA 310
D+ + E I+ ++E +F V+ I + + + ++
Sbjct: 244 DAKWKEQTIANTSEQQ--FKVEFECEF-LGSVDTLISPSKLRVMPYHDPIAQNKGLAVYK 300
Query: 311 IDDLYAPLIMGCDIAG-EGGDKTVVVF 336
+ I+ D+A D +
Sbjct: 301 RAEPDHNYIITVDVARGTSNDYSAFCV 327
>gi|291336835|gb|ADD96368.1| phage terminase large subunit [uncultured organism
MedDCM-OCT-S09-C20]
Length = 454
Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 46/330 (13%), Positives = 104/330 (31%), Gaps = 38/330 (11%)
Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN---SNPTIFKCAISAGRGIGKTTLNAW 96
+P+E P + + A + + + + G G GK+ A
Sbjct: 14 EPKRPVERAIDPGA--ADALRAKILADCLPAQREFLDDESHRILSYIGGFGSGKSFALAA 71
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+++L PG +++ + ++ L + L + + E
Sbjct: 72 KLIFLGLRNPGGTLMACEPTFPMIRTVLVPAIDMALDQ--------WDIEYSYRASPQPE 123
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE--ASGT--PDIINKSIL 212
S+ + + TI C++ + + + A DE S + +L
Sbjct: 124 Y---SINLPTGPVTIYCQSA-----ENYQRIRGQNICAAVWDECDTSPVDTAQKAGEMLL 175
Query: 213 GFFTELNPNRFWIMTSNTRRLNG--WFYDIF-NIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
N+ + + G W Y F D + ++ T+ + + F +
Sbjct: 176 ARMRTGELNQLAVAS----TPEGFRWAYRTFVENDGPDKRLIRVRTQDNPHLPADFIPSL 231
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEG 328
Y S + + + G F + P + +++ + + +G D+ G
Sbjct: 232 ERNY--PSQLIQAYLEGHFVNLASCSLYP--EFDRSLNYCDTQPTENDTIWIGVDL-NVG 286
Query: 329 GDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
T + RRG+ + + Q+ Q
Sbjct: 287 NCVTQHLVRRGDEFHFFAEKVYRDTQQIAQ 316
>gi|16082806|ref|NP_395360.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92]
gi|31795361|ref|NP_857813.1| hypothetical protein Y1030 [Yersinia pestis KIM]
gi|40787951|ref|NP_857660.2| hypothetical protein YPKMT021 [Yersinia pestis KIM]
gi|45478613|ref|NP_995469.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus
str. 91001]
gi|52788073|ref|YP_093901.1| hypothetical protein pG8786_021 [Yersinia pestis]
gi|108793557|ref|YP_636707.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua]
gi|108793757|ref|YP_636595.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516]
gi|145597216|ref|YP_001154679.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F]
gi|149192775|ref|YP_001294006.1| hypothetical protein YPE_4292 [Yersinia pestis CA88-4125]
gi|162417876|ref|YP_001604588.1| hypothetical protein YpAngola_0076 [Yersinia pestis Angola]
gi|165939469|ref|ZP_02228016.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|166214433|ref|ZP_02240468.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167402343|ref|ZP_02307808.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167422791|ref|ZP_02314544.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167466683|ref|ZP_02331387.1| hypothetical protein YpesF_02065 [Yersinia pestis FV-1]
gi|229896952|ref|ZP_04512111.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A]
gi|229897756|ref|ZP_04512911.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229900293|ref|ZP_04515428.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904817|ref|ZP_04519927.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516]
gi|270491004|ref|ZP_06208077.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM
D27]
gi|294502015|ref|YP_003565752.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003]
gi|3883031|gb|AAC82691.1| unknown [Yersinia pestis KIM 10]
gi|5834709|emb|CAB55206.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92]
gi|45357266|gb|AAS58660.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus
str. 91001]
gi|52538002|emb|CAG27427.1| hypothetical protein [Yersinia pestis]
gi|108777821|gb|ABG20339.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516]
gi|108782104|gb|ABG16161.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua]
gi|145212984|gb|ABP42389.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F]
gi|148872433|gb|ABR14922.1| hypothetical protein YPMT1.24c [Yersinia pestis CA88-4125]
gi|162350848|gb|ABX84797.1| conserved hypothetical protein [Yersinia pestis Angola]
gi|165912657|gb|EDR31287.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|166204381|gb|EDR48861.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166958284|gb|EDR55305.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048235|gb|EDR59643.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|229678132|gb|EEO74238.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516]
gi|229686652|gb|EEO78733.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229693337|gb|EEO83387.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229699988|gb|EEO88028.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A]
gi|262363909|gb|ACY60628.1| hypothetical protein YPD4_pMT0023 [Yersinia pestis D106004]
gi|262364065|gb|ACY64401.1| hypothetical protein YPD8_pMT0023 [Yersinia pestis D182038]
gi|270334985|gb|EFA45763.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM
D27]
gi|294352486|gb|ADE66542.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003]
gi|320017547|gb|ADW01117.1| hypothetical protein YPC_4788 [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 418
Score = 50.5 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 37/229 (16%)
Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
+ V +H +P FK + AGR GK+ L+ ++ + + +A +
Sbjct: 7 LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65
Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
+ LW ++ + P W + + +M I K+ + +
Sbjct: 66 MARQILWDDLQ-----------------EVLPRKWVRKKNDTTMTIVLKNGSEIALKGA- 107
Query: 179 ERPDTFVG--PHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
++PDT G H V DE PD K + + ++ + +
Sbjct: 108 DKPDTLRGVALH-----FVVLDEFQDMKPDTWYKVLRPTLSSTRGGA--LIIGTPKGFS- 159
Query: 236 WFYDIF----NIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
F+ ++ N WK +Q T + S E + S
Sbjct: 160 EFHKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDMDPKS 208
>gi|293604595|ref|ZP_06686998.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553]
gi|292817011|gb|EFF76089.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553]
Length = 463
Score = 50.5 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/209 (15%), Positives = 61/209 (29%), Gaps = 10/209 (4%)
Query: 147 SLHPSGWYAEL-LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
+ +GW E + S + + G + +E G +
Sbjct: 87 KIEAAGWRDEFDIGVSTIRHKLTGSEFLFYGLARNIEEIKG--TEGVDVCWIEEGEGLTE 144
Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY--QIDTRTVEGIDS 263
I + + + N + F L I+ + +
Sbjct: 145 EQWSIIDPTIRKEGAEVWVLW--NPHLITD-FVQAKLPALLGADCIIRHINYPDNPFLSA 201
Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIMG 321
D D R LGQ + + I ++IE A+ + +L +G
Sbjct: 202 TAKRKAERLKEADPDAYRHIYLGQPLSSDDASVIKFHWIEAAVDAHLKLGIELGGARTVG 261
Query: 322 CDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
D+A G DK G I + + +W+A
Sbjct: 262 YDVADSGADKNACSVFDGAICDELDEWAA 290
>gi|18466735|ref|NP_569542.1| hypothetical protein HCM2.0070c [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16506051|emb|CAD09937.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
Length = 418
Score = 50.5 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 37/229 (16%)
Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
+ V +H +P FK + AGR GK+ L+ ++ + + +A +
Sbjct: 7 LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65
Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
+ LW ++ + P W + + +M I K+ + +
Sbjct: 66 MARQILWDDLQ-----------------EVLPRKWVRKKNDTTMTIVLKNGSEIALKGA- 107
Query: 179 ERPDTFVG--PHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
++PDT G H V DE PD K + + ++ + +
Sbjct: 108 DKPDTLRGVALH-----FVVLDEFQDMKPDTWYKVLRPTLSSTRGGA--LIIGTPKGFS- 159
Query: 236 WFYDIF----NIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
F+ ++ N WK +Q T + S E + S
Sbjct: 160 EFHKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDMDPKS 208
>gi|161525001|ref|YP_001580013.1| hypothetical protein Bmul_1828 [Burkholderia multivorans ATCC
17616]
gi|189350256|ref|YP_001945884.1| bacteriophage TerL protein [Burkholderia multivorans ATCC 17616]
gi|160342430|gb|ABX15516.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
gi|189334278|dbj|BAG43348.1| bacteriophage TerL protein [Burkholderia multivorans ATCC 17616]
Length = 531
Score = 50.5 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/199 (18%), Positives = 61/199 (30%), Gaps = 29/199 (14%)
Query: 186 GPHNTHGMAVFNDEASGTP---------------DIINKSI---LGFFTELNPNRFWIM- 226
G H H +F D S I+++S + + +
Sbjct: 166 GTHAPHMRIIFPDTGSVITGESGDGIGRGDRASFYIVDESAFLERPQLVDASLSATTNCR 225
Query: 227 --TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
S + F K + R D ++ + LD V EI
Sbjct: 226 QDISTPNGMGNSFAQ--RRHSGKVKVFTFHWRDDPRKDDAWYAKQCAE--LDPVVVAQEI 281
Query: 285 LGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
+ IP +++ A+ + + G D+A EG DK R G ++
Sbjct: 282 DINYAASVEGVVIPSAWVQAAIGAHLKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLL 341
Query: 343 EHIFDWSAK--LIQETNQE 359
+ WS K I ET ++
Sbjct: 342 NFLRSWSGKGGDIYETVEK 360
>gi|152982949|ref|YP_001353896.1| hypothetical protein mma_2206 [Janthinobacterium sp. Marseille]
gi|151283026|gb|ABR91436.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 436
Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 72/243 (29%), Gaps = 33/243 (13%)
Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
+A Q K+ W V ++ +++P E + +P+G +L
Sbjct: 62 VAPFYRQAKSVAWDYVKRFSAVIPGISINESELRIDYPNGSRIQLFG------------- 108
Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNTR 231
+ D G V DE + I + + ++ +
Sbjct: 109 -----ADNADALRGLFFDG---VVADEYGDWKPSVWGYVIRPALADRGG--WAVIIGTPK 158
Query: 232 RLNGWFYDIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
N F++I+ EDW I + E + D+ R E+ F
Sbjct: 159 GRN-QFWEIYQHAGVNEDWLCLTIRASESGLLPPKEIEALQLELTEDA--WRQEMECDFD 215
Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAP---LIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
+ DDLY P + D+ G D + F+ G + I
Sbjct: 216 AALPGAIFGKEIWQAEQDGRVKDDLYDPELKVHAVLDL-GFTDDTAIWWFQVGKELRIID 274
Query: 347 DWS 349
+S
Sbjct: 275 CYS 277
>gi|158337379|ref|YP_001518554.1| hypothetical protein AM1_4258 [Acaryochloris marina MBIC11017]
gi|158307620|gb|ABW29237.1| conserved domain protein [Acaryochloris marina MBIC11017]
Length = 476
Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 30/174 (17%)
Query: 195 VFNDEASGTPDI--INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY- 251
+ DEA+ ++ + +++ + I+ S +G F+D N
Sbjct: 171 ILFDEAAFQTNLKLSLSAATPAMSQVGSDARIILCSTPNGASGHFFDTLNGFDNCVSDIE 230
Query: 252 QIDTRTVEGIDSGFHEG--------IISRYGLDSDVARIEILGQF--PQQEVNNFIPHNY 301
+I + + ++ E S YG D+ ++ P+ ++ +
Sbjct: 231 RIRSGELPPVNKWQREDGNIAIAIHWKSVYG-DNPSYLEDLEKSLSLPKAQIAQEYDLSL 289
Query: 302 IEE-------AMSREAIDDLYAP-------LIMGCDIAGEGGDK--TVVVFRRG 339
E A+ R A Y P +G D AG G D +V + + G
Sbjct: 290 TESSSVVFSFAVVRAAATGEYEPQFTEDELYYVGVDPAGSGADYFCSVFLKKTG 343
>gi|163716617|gb|ABY40529.1| putative TerL [Burkholderia phage Bups phi1]
Length = 531
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 27/188 (14%)
Query: 186 GPHNTHGMAVFNDEASGTP---------------DIINKSI---LGFFTELNPNRFWIM- 226
G H H +F D S ++++S + + +
Sbjct: 166 GTHAPHMRIIFPDTGSVITGESGDGIGRGDRASFYVVDESAFLERPQLVDASLSATTNCR 225
Query: 227 --TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
S + F K + R D ++ ++ LD V EI
Sbjct: 226 QDISTPNGMGNSFAQ--RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAE--LDPVVVAQEI 281
Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
+ IP +++ A+ + G D+A EG DK R G ++
Sbjct: 282 DINYAASVEGVVIPSAWVQAALGAHVKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLL 341
Query: 343 EHIFDWSA 350
EH+ WS
Sbjct: 342 EHLESWSG 349
>gi|304360765|ref|YP_003856886.1| gp8 [Mycobacterium phage Angelica]
gi|302858349|gb|ADL71097.1| gp8 [Mycobacterium phage Angelica]
Length = 473
Score = 49.7 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 52/332 (15%), Positives = 100/332 (30%), Gaps = 57/332 (17%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
+WQ + + V + ++ +F +I R GKT ++ PG ++I
Sbjct: 43 DQWQDDLGKLVCAKRSDGLYAAD--MFAMSI--PRQTGKTYFLGAIVFAFCKMNPGTTVI 98
Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
A+ + AE K + L R L++H G ++ +T
Sbjct: 99 WTAH-----RTRTAAETFKSMQALAKREQIAPHILNVH----------TGNGKEAVLFTN 143
Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-- 229
R R F G + DEA + ++ T +PN +
Sbjct: 144 GSRILFGAREKGF-GRGFAKVDVLIFDEAQILSENAMDDMIPA-TNASPNGLILFAGTPP 201
Query: 230 -TRRLNGWF---------------------YDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
F D + P E+ +++ +
Sbjct: 202 KPTDPGEVFTNLRMDALNGESDDVAYVEISADENDDPDEESTWRKMNPSYPHRTSARAIR 261
Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-----PLIMGC 322
+ DS R E +G + + V+ I+ + R+ D L P +G
Sbjct: 262 RMRKALSWDS--FRREAMGIWDKISVHA----QVIKAGLWRDLADPLGPEPGAKPASLGV 315
Query: 323 DIAGEGGDKTVVVFRRGNIIEHIFD-WSAKLI 353
D++ G + + + H+ W+
Sbjct: 316 DMSHGGAISIGGCWLIDDELRHVEQVWAGTDT 347
>gi|167725769|ref|ZP_02409005.1| hypothetical protein BpseD_42528 [Burkholderia pseudomallei DM98]
Length = 517
Score = 49.7 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 27/188 (14%)
Query: 186 GPHNTHGMAVFNDEASGTP---------------DIINKSI---LGFFTELNPNRFWIM- 226
G H H +F D S ++++S + + +
Sbjct: 152 GTHAPHMRIIFPDTGSVITGESGDGIGRGDRASFYVVDESAFLERPQLVDASLSATTNCR 211
Query: 227 --TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
S + F K + R D ++ ++ LD V EI
Sbjct: 212 QDISTPNGMGNSFAQ--RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAE--LDPVVVAQEI 267
Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
+ IP +++ A+ + G D+A EG DK R G ++
Sbjct: 268 DINYAASVEGVVIPSAWVQAALGAHVKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLL 327
Query: 343 EHIFDWSA 350
EH+ WS
Sbjct: 328 EHLESWSG 335
>gi|161614489|ref|YP_001588454.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161363853|gb|ABX67621.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 441
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 13/166 (7%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P ED +
Sbjct: 96 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 153
Query: 253 IDTRTVEGIDS---GFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS- 307
I+ + + RY + + P+ + + I ++IE A+
Sbjct: 154 INYDENPFLSDTMLKVIDAARRRYPEG----FVHVYEGVPESDDDAAIIKLSWIEAAVDA 209
Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+ +G D+A G DK V+R G++I +W AK
Sbjct: 210 HKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 255
>gi|326782381|ref|YP_004322781.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-ShM2]
gi|310003329|gb|ADO97726.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-ShM2]
Length = 362
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/256 (14%), Positives = 86/256 (33%), Gaps = 42/256 (16%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GK+T+ +LW + +++ +AN + L + + + Q + +
Sbjct: 85 GKSTIVTSYLLWYVIFNDNVNVAILANKAATSREML----QRLQRSYENLPKWLQQGI-V 139
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
+ EL S + + + R S +F DE + P+ I
Sbjct: 140 QWNRGSLELENGSKIMAASTSSSAVRGMSFN--------------VIFLDEFAFVPNHIA 185
Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
S+ + + I+ S +N FY +++ ++ ++ V G
Sbjct: 186 DEFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDSERKKNEYISTEVHWSEVPGR 243
Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI-----DDLYA 316
D+ + I+ ++E +F V+ I + + + + + +Y
Sbjct: 244 DAKWKAQTIANTSEQQ--FKVEFECEF-LGSVDTLISPSKLRTMVYNDPLVQNKGLSIYE 300
Query: 317 PL------IMGCDIAG 326
+ ++ D+A
Sbjct: 301 HVQKDHNYVITVDVAR 316
>gi|61806000|ref|YP_214360.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM2]
gi|61374509|gb|AAX44506.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM2]
gi|265525210|gb|ACY76007.1| terminase large subunit gp17 [Prochlorococcus phage P-SSM2]
Length = 547
Score = 49.7 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 49/266 (18%), Positives = 86/266 (32%), Gaps = 43/266 (16%)
Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
GK+T +L +++ +AN + ++ L L + MQ
Sbjct: 82 TGKSTTCISYLLHYAVFNDNVNVAVLANKASTARDLLGR-----LQLAYENLPRWMQQGI 136
Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
+ + EL S + + R S +F DE + P+ I
Sbjct: 137 ISWNKGSLELENGSKISANSTSSSAVRGGSYN--------------VIFLDEFAFIPNHI 182
Query: 208 ----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEG 260
S+ T + I+ S R +N FY +++ ++ + V G
Sbjct: 183 ADDFFASVYPTITS-GQSTKVIIVSTPRGMN-HFYRMWHDSEKGKSEYVATDVHWSEVPG 240
Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI-----EEAMSREAIDDLY 315
D + E I+ +IE +F VN I + E +R A D+Y
Sbjct: 241 RDEEWKEQTIANTSEQQ--FKIEFECEF-LGSVNTLINPAKLRNLVYEAPKTRNAGLDIY 297
Query: 316 APL------IMGCDIAGE-GGDKTVV 334
I+ D+A G D +
Sbjct: 298 ETPVKEHNYIITVDVARGLGNDYSAF 323
>gi|310815629|ref|YP_003963593.1| Putative large terminase [Ketogulonicigenium vulgare Y25]
gi|308754364|gb|ADO42293.1| Putative large terminase [Ketogulonicigenium vulgare Y25]
Length = 427
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 49/297 (16%), Positives = 90/297 (30%), Gaps = 49/297 (16%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNTLWAEVSKWL 132
I GRG GKT A W+ S G + IA + Q + + S +
Sbjct: 36 IMGGRGAGKTRAGA---EWVRSMVEGPRPDTPGRAKRVGLIAQTMDQAREVMVFGDSGLM 92
Query: 133 SMLP---HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
+ P W +++ P+G R +S P+ GP
Sbjct: 93 ACCPPARRPEWIAGRAMLRWPNG------------------AEARLFSAHDPEALRGPQF 134
Query: 190 THGMAVFNDEASG--TPDIINKSI-LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
A++ DE + + +G +P T G F
Sbjct: 135 D---AIWADEVAKWRLAQEAWDMLVMGLRLGDDPRA----CLTTTPRGGPFLRKLLAQSG 187
Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
+ + GF + + + S + R E+ G + P + ++ A+
Sbjct: 188 TVMTHAPTRANRANLAPGFVAAVEAMF-EGSHLGRQELDGLLVDEAEGTLWPQHLLDAAL 246
Query: 307 SREAIDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
R+A +++ D G D ++ DW +I++ +G
Sbjct: 247 QRQA--PPLDRIVVAVDPPVTGHAGSDACGIIVAGVEQRGAPTDWRLWVIEDATVQG 301
>gi|166012063|ref|ZP_02232961.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|167427125|ref|ZP_02318878.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|2996304|gb|AAC13184.1| P-loop protein [Yersinia pestis KIM 10]
gi|165988997|gb|EDR41298.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|167053876|gb|EDR63708.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
str. K1973002]
Length = 402
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 37/215 (17%)
Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
+P FK + AGR GK+ L+ ++ + + +A + + LW ++
Sbjct: 5 QSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQMARQILWDDLQ--- 60
Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNT 190
+ P W + + +M I K+ + + ++PDT G H
Sbjct: 61 --------------EVLPRKWVRKKNDTTMTIVLKNGSEIALKGA-DKPDTLRGVALH-- 103
Query: 191 HGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF----NIP- 244
V DE PD K + + ++ + + F+ ++ N
Sbjct: 104 ---FVVLDEFQDMKPDTWYKVLRPTLSSTRGGA--LIIGTPKGFS-EFHKLWTIGQNKDL 157
Query: 245 --LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
WK +Q T + S E + S
Sbjct: 158 QRKGQWKSWQFVTADSPFVPSAEIEAAKNDMDPKS 192
>gi|148256282|ref|YP_001240867.1| hypothetical protein BBta_4946 [Bradyrhizobium sp. BTAi1]
gi|146408455|gb|ABQ36961.1| hypothetical protein BBta_4946 [Bradyrhizobium sp. BTAi1]
Length = 482
Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 50/234 (21%), Positives = 87/234 (37%), Gaps = 22/234 (9%)
Query: 105 RPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
RPG ++C+A Q + L ++ ++ L+ + AE E S
Sbjct: 114 RPGERALVMCLACDRAQARIIL---------NYIRSYFTDLPLLAGMVTRETAEGFELSN 164
Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-INKSILGFFTELNPN 221
G+D T + R RP +A + DE + PD + ++I L N
Sbjct: 165 GVDVAVATNSFRAVR-GRPILLAVL---DEVAFWRDENTAKPDEELYRAITPAMATL-SN 219
Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR-YGLDSDVA 280
I S+ R +G Y F + ++ + II R D A
Sbjct: 220 SMIIGISSPYRKSGLLYKKFKSHFGKDGDVLVIQAPTRTLNPTIPQEIIDRALAEDPAAA 279
Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG---CDIAGEGGDK 331
E +G+F + ++ ++P IE A+ + + P+ + CD +G GD
Sbjct: 280 SAEWMGEF-RDDIGGWLPLEVIESAVDQGVMVRPPQPIHIYRSFCDPSGARGDS 332
>gi|294650848|ref|ZP_06728195.1| bacteriophage terminase large subunit TerL [Acinetobacter
haemolyticus ATCC 19194]
gi|292823266|gb|EFF82122.1| bacteriophage terminase large subunit TerL [Acinetobacter
haemolyticus ATCC 19194]
Length = 552
Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 29/245 (11%)
Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
K+ M + + P+G+ ++ + M I + T + + G
Sbjct: 155 FHKFRDMFSKMPDW------MKPTGFVEKVHDNYMRIINPDNGATITGEAGDNI----GR 204
Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
M DE + +++ ++ N N I S + F+ +
Sbjct: 205 GGRTTMYFL-DEWAFVER--QEAVDAAISQ-NTNVH-IKGSTPNGIGDRFHQ--DRFSGR 257
Query: 248 WKRYQIDTRTVEG------IDSGFHEGI-ISRYGLDSDVARI-EILGQFPQQEVNNFIPH 299
+ + + R + + DV E+ + IP
Sbjct: 258 YAVFSMPWRANPDKNWTVEYNGKQIHPWYEKQLATLDDVVLAQEVDINYAASVEGVLIPS 317
Query: 300 NYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK--LIQE 355
+++ A+ + + I G D+A EG DK R G ++ ++ WS K I
Sbjct: 318 TWVQLAIDAHIKLGIEPTGDRIAGLDVADEGKDKNSFASRHGIVMTYLDTWSGKGDDIFG 377
Query: 356 TNQEG 360
T Q+
Sbjct: 378 TTQKA 382
>gi|158300801|ref|XP_320633.4| AGAP011893-PA [Anopheles gambiae str. PEST]
gi|157013336|gb|EAA00145.5| AGAP011893-PA [Anopheles gambiae str. PEST]
Length = 607
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 48/283 (16%), Positives = 93/283 (32%), Gaps = 28/283 (9%)
Query: 3 RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
R + + L + +++ A +S +F FP KP ++ W +
Sbjct: 151 RSLKIEFPLNRLQYKLEYTALVHMSRLDFSSILFPKIESAKP-TTPAKTFDWFQSCIAEN 209
Query: 63 DVHCHSNVN--NSNPTIFKCAISAGRGIGKTT--LNAWMMLWLISTRPGMSIICIANS-- 116
+ + N N + G GKT + A + +W + RP I+ A S
Sbjct: 210 EQQTQAIKNIVNRTAYPAPYILFGPPGTGKTCTIVEAVLQIWKM--RPKSRILVTATSNY 267
Query: 117 ------ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ-SMGIDSKHY 169
+ LK ++ ++ S R M + S + + E +M +
Sbjct: 268 ACNELAKRLLKYVTVNDLFRYFSQTSQRDINGMDLKVVQVSNMHYGIYETPAMQDFVQTR 327
Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-TELNPNRF---WI 225
+ C + R G + +F DE ++ +G T+ NR +
Sbjct: 328 ILVCTVMTSGRLLQL-GVDRSMYDYIFIDECGSCRELSALVPIGCVGTDTTNNRLQASVV 386
Query: 226 MTSNTRRLNGWFYDIFNIPLED-----W--KRYQIDTRTVEGI 261
+ + +L FYD D W + + R + +
Sbjct: 387 LAGDPLQLGPQFYDAELRAKGDPTITHWAVNWHHLPNRKLPML 429
>gi|238027169|ref|YP_002911400.1| hypothetical protein bglu_1g15550 [Burkholderia glumae BGR1]
gi|237876363|gb|ACR28696.1| Hypothetical protein bglu_1g15550 [Burkholderia glumae BGR1]
Length = 531
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 56/188 (29%), Gaps = 27/188 (14%)
Query: 186 GPHNTHGMAVFNDEASGTP---------------DIINKSI---LGFFTELNPNRFWIM- 226
G H H +F D S ++++S + + +
Sbjct: 166 GTHAPHMRIIFPDTGSVITGESGDGIGRGDRASFYVVDESAFLERPQLVDASLSATTNCR 225
Query: 227 --TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
S + F K + R D ++ ++ LD V EI
Sbjct: 226 QDISTPNGMGNSFAQ--RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAE--LDPVVVAQEI 281
Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
+ IP +++ A+ G D+A EG DK R G ++
Sbjct: 282 DINYAASVEGVVIPSAWVQAALGAHVKLGISPSGARRGGLDVADEGKDKNAFAGRYGFLL 341
Query: 343 EHIFDWSA 350
EH+ WS
Sbjct: 342 EHLESWSG 349
>gi|213161040|ref|ZP_03346750.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
Length = 421
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P ED +
Sbjct: 76 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 133
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D + + P+ + + I ++IE A+ +
Sbjct: 134 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 192
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+G D+A G DK V+R G++I +W AK
Sbjct: 193 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 235
>gi|213029404|ref|ZP_03343851.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 282
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P ED +
Sbjct: 75 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 132
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D + + P+ + + I ++IE A+ +
Sbjct: 133 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 191
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+G D+A G DK V+R G++I +W AK
Sbjct: 192 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 234
>gi|16759908|ref|NP_455525.1| prophage terminase large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142320|ref|NP_805662.1| prophage terminase large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213583175|ref|ZP_03365001.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213647535|ref|ZP_03377588.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213855100|ref|ZP_03383340.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|25512685|pir||AF0621 probable prophage terminase large chain STY1047 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16502201|emb|CAD05440.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29137950|gb|AAO69511.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
Length = 467
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P ED +
Sbjct: 122 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 179
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D + + P+ + + I ++IE A+ +
Sbjct: 180 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 238
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+G D+A G DK V+R G++I +W AK
Sbjct: 239 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 281
>gi|213423381|ref|ZP_03356369.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 414
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P ED +
Sbjct: 69 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 126
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D + + P+ + + I ++IE A+ +
Sbjct: 127 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 185
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+G D+A G DK V+R G++I +W AK
Sbjct: 186 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 228
>gi|169344384|ref|ZP_02865357.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
gi|169297509|gb|EDS79616.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
Length = 415
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 48/284 (16%), Positives = 95/284 (33%), Gaps = 33/284 (11%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
G G GK+ M++ PG + + + LK +++A L W
Sbjct: 31 GGGGSGKSHFVVQKMIYKYLKYPGRKCLVVRKVNSTLKESIFA-----LFRSVLSDWQIY 85
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
++ + EL +S+ I E+ + G + + +E +
Sbjct: 86 DECKINKTDLTIELPNKSLFIFKGIDD-------PEKIKSIAGIDD-----IVVEECTEI 133
Query: 204 PDIINKSILGFFTELNP-NRFWIMTSNTRRLNGWFYDIFNI---PLEDWKRYQIDTRTVE 259
+ + NP N+ +M N + W Y + +D + +
Sbjct: 134 DEFDFDQLNLRLRSKNPYNQIHVMF-NPVSKSNWVYKRWFKNGYDTKDTIVLHTTYKNNK 192
Query: 260 GIDSGFHEGIISRYGLDSDVA-RIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYA 316
+ + + ++ + D+ V RI LG+F ++ I N+ EE+ + I +
Sbjct: 193 FLPKDYIDSLL-KLEKDNPVYFRIYALGEF--ATLDKLIYTNWKEESFDYKEILKNNRNT 249
Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
I D G D T V + I + E ++G
Sbjct: 250 KAIFSLDF-GYTNDPTAFVCSIIDKINKKL----WIFDEFQEKG 288
>gi|296141561|ref|YP_003648804.1| terminase [Tsukamurella paurometabola DSM 20162]
gi|296029695|gb|ADG80465.1| Terminase [Tsukamurella paurometabola DSM 20162]
Length = 489
Score = 48.6 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 51/359 (14%), Positives = 98/359 (27%), Gaps = 68/359 (18%)
Query: 20 MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
+ +E L+F + +R KG + WQ++ V +
Sbjct: 22 VESERFLAFADKFLRV----PKGTGAKGKLHLRDWQVDVARDV----------LDSGART 67
Query: 80 CAISAGRGIGKTTLNAWMMLW-LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
I RG GKTTLNA + L+ + G ++ +A E Q L+ R
Sbjct: 68 VGIMFPRGQGKTTLNAAIALYRFFTGGEGANVCVVAVDERQAG----------LAFSAAR 117
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
E+ + + + + + C S P G + D
Sbjct: 118 RMVELNEELSARCQIFKD----RLYLPTTDSVFQCLPAS---PTALEGL---DYVLALVD 167
Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL-------NGWFYDIFNIPLE--DWK 249
EA + + + + + Y + + W+
Sbjct: 168 EAGVVNRDVFEVVQLA-QGKREKSVLVAIGTPGPNLDDQVLLSLRDYHLEHPDDASLRWR 226
Query: 250 RYQIDTRTV---------EGIDSGFHEGIISRY--------GLDSDVARIEILGQFPQQE 292
+ E + + + +S R + QF
Sbjct: 227 EFSAAGFEDHPVDCTHCWELANPALDDFLHRDALVALLPPKTRESTFRRARLC-QFAADT 285
Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF---RRGNIIEHIFDW 348
+F+P E + E + L A +++ D D T ++ + W
Sbjct: 286 EGSFLPAGVWEGLSTGEPVP-LGAEVVIALD-GSFSDDTTALLLGTVAAAPHFHPLRVW 342
>gi|85058727|ref|YP_454429.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84779247|dbj|BAE74024.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 456
Score = 48.6 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 54/164 (32%), Gaps = 5/164 (3%)
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
+ +EA ++ + W+ + L+ + PL+D +
Sbjct: 116 WVEEAEAVTKESWDILIPTIRKPGSE-IWVSFNPKNILDDTYQRFVVNPLDDICLLTVHY 174
Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAID 312
+ D D+ G+ P + + I +I A+
Sbjct: 175 TDNPHFPEVLRLEMEECKCKDYDLYLHIWEGE-PVADSDLAIIKPLWIAAAVDAHITLGF 233
Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
+ +G D+A EG D ++ G+++ H+ W+ + ++
Sbjct: 234 EPAGKKRIGFDVADEGEDSNALILSHGSVVMHLETWNKGDVIQS 277
>gi|89071120|ref|ZP_01158320.1| Putative large terminase [Oceanicola granulosus HTCC2516]
gi|89043331|gb|EAR49553.1| Putative large terminase [Oceanicola granulosus HTCC2516]
Length = 444
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 45/284 (15%), Positives = 84/284 (29%), Gaps = 26/284 (9%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
I GRG GKT A W+ + G + + L E ++ R
Sbjct: 58 ILGGRGAGKTRAGA---EWVRAQVEGPR--ATDPGRAR-RVALVGE-----TIDQAREVM 106
Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHY--TITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
L E G + + +S P+ GP A + DE
Sbjct: 107 VFGDSGLLACAPPDRRPEWIAGRRLLVWPNGAQAQLFSAHDPEALRGPQFD---AAWVDE 163
Query: 200 AS--GTPDIINKSILGFF-TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
+ + + +P + T R + + +
Sbjct: 164 LAKWKKAEEAWDMLQLALRLGDDPR---CCVTTTPRPTALMRALLERD-GTARTHAPTEA 219
Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
+ F + RY S + R E+ G + I A + + + DL+
Sbjct: 220 NAANLARAFLAEVRRRY-AGSPLGRQELDGVMLSEIEGALWSAGAI-AAANCDVVPDLHR 277
Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
+++ D + GGD +V +W A ++++ + G
Sbjct: 278 -VVVAVDPSAGGGDVCGIVVAGACYDGGADNWRAWVLEDASVAG 320
>gi|289805729|ref|ZP_06536358.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 257
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P ED +
Sbjct: 82 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 139
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D + + P+ + + I ++IE A+ +
Sbjct: 140 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 198
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+G D+A G DK V+R G++I +W AK
Sbjct: 199 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 241
>gi|213618708|ref|ZP_03372534.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 282
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P ED +
Sbjct: 122 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 179
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D + + P+ + + I ++IE A+ +
Sbjct: 180 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 238
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+G D+A G DK V+R G++I +W AK
Sbjct: 239 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 281
>gi|170748408|ref|YP_001754668.1| hypothetical protein Mrad2831_1990 [Methylobacterium radiotolerans
JCM 2831]
gi|170654930|gb|ACB23985.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
2831]
Length = 478
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 22/195 (11%)
Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSI 211
+E + G+D + +T +T G +A ++ E S PD +I ++
Sbjct: 144 PTSETIRLLSGVDIEVRPANYKTIRG---ETLAGCLADE-VAFWHLENSANPDTLILDAV 199
Query: 212 LGFF-TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI-----DTRTV-EGIDSG 264
T P + S+ G Y + ++T+ +D
Sbjct: 200 RPGLATTGGP---LCVLSSPYARKGELYRTHQRDFGPSGDPAVLVLRAPSQTMNPSLDPA 256
Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS---REAIDDLYAPLIMG 321
+ Y D A E +F + +V FI ++ M+ E
Sbjct: 257 VVK---RAYTRDPAAASAEYGAEF-RADVEAFISLEAVQACMAGDLLERAPAPGLTYQAF 312
Query: 322 CDIAGEGGDKTVVVF 336
CD +G G D +
Sbjct: 313 CDPSGGGADSMTLAI 327
>gi|304360860|ref|YP_003856980.1| gp8 [Mycobacterium phage CrimD]
gi|302858609|gb|ADL71354.1| gp8 [Mycobacterium phage CrimD]
Length = 473
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 52/329 (15%), Positives = 99/329 (30%), Gaps = 51/329 (15%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
+WQ + + V + ++ +F +I R GKT ++ L PG ++I
Sbjct: 43 DQWQDDLGKLVCAKRSDGLYAAD--MFAMSI--PRQTGKTYFLGAIVFALCKMTPGTTVI 98
Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
A+ + AE K + L R L++H G ++ +T
Sbjct: 99 WTAH-----RTRTAAETFKSMQALAKREQIAPHILNVH----------TGNGKEAVLFTN 143
Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-- 229
R R F G + DEA + ++ T +PN +
Sbjct: 144 GSRILFGAREKGF-GRGFAKVDVLIFDEAQILSENAMDDMVPA-TNASPNGLILFAGTPP 201
Query: 230 -TRRLNGWF---------------------YDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
F D + P E+ +++ +
Sbjct: 202 KPTDPGEVFTNLRLDAINGESDDVAYVEISADENDDPDEESTWRKMNPSYPHRTSARAIR 261
Query: 268 GIISRYGLDSDVARIEILGQFPQQEVN-NFI-PHNYIEEAMSREAIDDLYAPLIMGCDIA 325
+ DS R E +G + + V+ I P + + A P +G D++
Sbjct: 262 RMRKALSWDS--FRREAMGIWDKISVHAQVIKPSLWRDLADPLGPEPGAK-PASLGVDMS 318
Query: 326 GEGGDKTVVVFRRGNIIEHIFD-WSAKLI 353
G + + + H+ W+
Sbjct: 319 HGGAISIGGCWLIDDELRHVEQVWAGTDT 347
>gi|168699883|ref|ZP_02732160.1| hypothetical protein GobsU_10183 [Gemmata obscuriglobus UQM 2246]
Length = 205
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 14/107 (13%)
Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
+ + VG V DE S D + KS+ + S GWF+
Sbjct: 63 DSQEGVVGFSA--PRLVVIDEGSRVSDELYKSVRPMLAVSKGQ--LLTLSTPFGNQGWFF 118
Query: 239 DIFNIPLED----------WKRYQIDTRTVEGIDSGFHEGIISRYGL 275
DI++ E W+R + + I F E + G
Sbjct: 119 DIWDDSAEGLKRRSKLHEPWQRTAVPASQIPRITPEFLEDERAELGE 165
>gi|213426918|ref|ZP_03359668.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
Length = 374
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P ED +
Sbjct: 29 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 86
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D + + P+ + + I ++IE A+ +
Sbjct: 87 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 145
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+G D+A G DK V+R G++I +W AK
Sbjct: 146 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 188
>gi|317120885|ref|YP_004100888.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM
12885]
gi|315590865|gb|ADU50161.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM
12885]
Length = 410
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 59/263 (22%), Positives = 95/263 (36%), Gaps = 36/263 (13%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
I AGRG GKT A + + I + + +++ + S LS+ P
Sbjct: 36 ILAGRGFGKTRTGAEWVREQVERHGRRRIAIVGRTAADVRDVMVEGESGILSISP----- 90
Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-- 199
W+ + E S + YS + PD GP + A + DE
Sbjct: 91 ----------PWFRPVYEPSKRRLTWPNGAIATLYSADEPDLLRGPQHD---AAWADELA 137
Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
A P+ + + G +P ++ + T R D+ N P T E
Sbjct: 138 AWRRPEAWDNLMFGLRLGPDPR---VVVTTTPRPVKLIRDLLNDP----TCVVTRGSTYE 190
Query: 260 ---GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
+ F E IISRY + + R E+ G+ I+E REA + +
Sbjct: 191 NAANLAPAFLEQIISRY-EGTRLGRQELYGEVLDDVPGALWQRKRIDELRVREAPELVR- 248
Query: 317 PLIMGCDIA---GEGGDKTVVVF 336
+++ D A EG D+T +V
Sbjct: 249 -VVVAIDPAVTSEEGSDETGIVV 270
>gi|289829424|ref|ZP_06547036.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
Length = 346
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 7/163 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P ED +
Sbjct: 1 MLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEDTLIRK 58
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D + + P+ + + I ++IE A+ +
Sbjct: 59 INYDENPFLSDTMLKVIDAARRRD-PEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKV 117
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
+G D+A G DK V+R G++I +W AK
Sbjct: 118 LDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKE 160
>gi|297566322|ref|YP_003685294.1| hypothetical protein Mesil_1911 [Meiothermus silvanus DSM 9946]
gi|296850771|gb|ADH63786.1| protein of unknown function DUF264 [Meiothermus silvanus DSM 9946]
Length = 427
Score = 48.2 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 49/264 (18%), Positives = 96/264 (36%), Gaps = 29/264 (10%)
Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
+GK+ + + P + ++ E Q SK L+ RH +Q ++
Sbjct: 32 VGKSFAASLEAVLDCVAHPRSLWVFLSRGERQ---------SKELAEKAQRHLEAIQVVA 82
Query: 148 -LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTP 204
++ + AE + + + + I+ PDT G V DE +
Sbjct: 83 EMYDEPFDAESTQTVIRLPNGSRIISL----PANPDTARGYSGN----VLLDEFALHKDS 134
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRYQIDTRTVEGID 262
I ++ T + + S + G FY+I+ + W R+++D
Sbjct: 135 REIWGALYPTIT-RSKRYRLRVLSTPKGQQGKFYEIWQPEPGGDLWSRHRVDIYDAVQQG 193
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIM 320
+ + D + + E L +F + ++P+ I S +A D L L +
Sbjct: 194 LEVDPEELRKGLKDPVLWQQEYLLEFVDEAS-AWLPYELITSCESSQARTDGALEGDLYL 252
Query: 321 GCDIAGEGGDKTVV--VFRRGNII 342
G DI D +V+ R G+++
Sbjct: 253 GMDIGRH-RDLSVIWVAERVGDVL 275
>gi|211731737|gb|ACJ10086.1| terminase [Bacteriophage APSE-5]
Length = 469
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 47/304 (15%), Positives = 83/304 (27%), Gaps = 75/304 (24%)
Query: 84 AGRGIGKTTLNAWMMLW--------LISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
GRG KT A + L + R M+ I E + L AEV L +
Sbjct: 12 GGRGGMKTVSFAKIALITASMHKRRFLCLREFMNSI-----EDSVHAVLQAEVET-LGLQ 65
Query: 136 PHRHWFEMQSLSLHPSGW-YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
++ S + Y +L I SKH
Sbjct: 66 NRFRILNTYIEGINDSIFKYGQLARNIASIKSKHDFDVA--------------------- 104
Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW------ 248
+ +EA + +++ + W N +G Y F P ++
Sbjct: 105 -WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKELIDTQGY 161
Query: 249 --------------KRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
+ + + ++ YG + D
Sbjct: 162 YEDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANY---------- 211
Query: 292 EVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
+ I ++E A+ + ++ D A G D+ + R G +IE WS
Sbjct: 212 -EDALIQPEWVEAAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWS 270
Query: 350 AKLI 353
+
Sbjct: 271 EGDV 274
>gi|156564098|ref|YP_001429607.1| terminase large subunit [Bacillus phage 0305phi8-36]
gi|154622795|gb|ABS83675.1| terminase large subunit [Bacillus phage 0305phi8-36]
Length = 635
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 20/133 (15%)
Query: 18 MLMHAECVLSFKNFVMRFFPW----GIKGKP-----LEHFSQPHRWQLEFMEAVDVHCHS 68
L E + + ++R W G K L +P W E ++
Sbjct: 18 QLWETE----YDDLIVRTKKWARSTGEKFTEEELHYLAILDKPKFWAAETLKWFCRDYQE 73
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS------IICIANSETQLKN 122
+ + + GR +GKT M+LW T+P I+ IA E Q+ +
Sbjct: 74 PMLQEMADSKRTVLRLGRRLGKTETMCIMILWHAFTQPNKGPNNQYDILIIAPYEEQV-D 132
Query: 123 TLWAEVSKWLSML 135
++ +S+ + M
Sbjct: 133 LIFKRLSQLIDMS 145
>gi|326784094|ref|YP_004324487.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn1]
gi|310004826|gb|ADO99217.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn1]
Length = 550
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 48/267 (17%), Positives = 94/267 (35%), Gaps = 45/267 (16%)
Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
GK+T +L + +++ +AN + ++ L A ++ LP W +Q
Sbjct: 84 TGKSTTVVSYLLHYLIFNDSVNVGILANKASTARDLL-ARLATAYENLPK--W--IQQGV 138
Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
+ + EL S + + R S +F DE + P+ I
Sbjct: 139 VVWNKGNIELENGSKILAASTSASAVRGMSFN--------------IIFLDEFAFVPNHI 184
Query: 208 ----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEG 260
S+ T + I+ S + +N FY ++ D+ +++ V G
Sbjct: 185 ADSFFASVYPTITS-GKSTKVIIISTPQGMN-HFYKMWQDAVNGRNDYTYHEVHWSQVPG 242
Query: 261 IDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYI-----EEAMSREAIDDL 314
D+ + E I S E +F V+ I + + +E ++R D+
Sbjct: 243 RDAKWKEETIKN---TSQRQFTQEFECEF-LGSVDTLISASKLKALAFDEPITRNKGLDI 298
Query: 315 YAPL------IMGCDIAGE-GGDKTVV 334
Y ++ D++ GGD +
Sbjct: 299 YEKPKDKNEYLLTVDVSRGIGGDYSAF 325
>gi|326784562|ref|YP_004324947.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM7]
gi|310004595|gb|ADO98987.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM7]
Length = 550
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 46/259 (17%)
Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
GK+T+ +LW + + +++ +AN E+ + L + +Q
Sbjct: 85 TGKSTIVTSYLLWYVLFKANVNVAILANKAA-----TSREMLQRLQLSYENLPKWLQQGI 139
Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
L + EL S + + + R S +F DE + P+ I
Sbjct: 140 LQWNRGSLELENGSKIMAASTSSSAVRGMSFN--------------VIFLDEFAFVPNHI 185
Query: 208 ----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEG 260
S+ + + I+ S +N FY +++ ++ ++ V G
Sbjct: 186 ADQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERGKNEYIPTEVHWSAVPG 243
Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE-------------AMS 307
D+ + + I+ ++E +F V+ I + + A+
Sbjct: 244 RDAAWKDQTIANTSEQQ--FKVEFECEF-LGSVDTLISPSKLRTMPYEDPIIQNRGLAVY 300
Query: 308 REAIDDLYAPLIMGCDIAG 326
++ + I+ D+A
Sbjct: 301 KQV--EKDHNYIVTVDVAR 317
>gi|226940436|ref|YP_002795510.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715363|gb|ACO74501.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 93
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 14 ELHEMLMH--AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVN 71
++ + L+ AEC + + + WG LE + P WQ E M + H +
Sbjct: 3 DIDDELIELAAECATDPLRWALHAYDWGR--GELEGVTGPRAWQREVMSDIGNHLKNPAT 60
Query: 72 NSNPTIFKCAISAGRGIG 89
+ A AGRG+G
Sbjct: 61 RFS------AFDAGRGLG 72
>gi|9633565|ref|NP_050979.1| P18 [Acyrthosiphon pisum bacteriophage APSE-1]
gi|6118013|gb|AAF03961.1|AF157835_18 P18 [Endosymbiont phage APSE-1]
Length = 469
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 25/183 (13%), Positives = 51/183 (27%), Gaps = 38/183 (20%)
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW------- 248
+ +EA + S++ + W N +G Y F P ++
Sbjct: 105 WVEEAETVSEKSLDSLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKELIDTQGYY 162
Query: 249 -------------KRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
+ + + ++ YG + D
Sbjct: 163 EDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANY----------- 211
Query: 293 VNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
+ I ++E A+ + ++ D A G D+ + R G +IE WS
Sbjct: 212 EDALIQPEWVEAAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSE 271
Query: 351 KLI 353
+
Sbjct: 272 GDV 274
>gi|203288482|ref|YP_002223299.1| bsr protein [Borrelia duttonii Ly]
gi|201084467|gb|ACH94050.1| bsr protein [Borrelia duttonii Ly]
Length = 450
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 48/294 (16%), Positives = 91/294 (30%), Gaps = 51/294 (17%)
Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR------- 105
+ Q + + A++ + + K +S G GKT L + T
Sbjct: 47 KKQRKVLSAIEKNNQN----------KVILSGGIASGKTFLA---CYLFLKTLLKNRHRY 93
Query: 106 -PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
+ + NS+ L+ + + K +M ++ + + + Y E+ + +
Sbjct: 94 SHDTNNFILGNSQKALEINVTGQFKKLANM------LKIPFVPKYSNTSYFEINSLRVNL 147
Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
Y ++ F ++ ++ +EA+ K L + P
Sbjct: 148 -----------YGGDKIRDFERFRGSNSAVIYVNEATTLHKETLKEALKRL-RIKPEFIV 195
Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
T N +F + + Y T E I F + Y D + +
Sbjct: 196 FDT-NPDHPEHYFKTDYIDNNTVYSTYNFTTYDNEEISKEFIKTQEELY-KDFPTYKASV 253
Query: 285 -LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG-EGGDKTVVVF 336
LG++ F N IE D + I D A GGD T +
Sbjct: 254 LLGEWVANNDAIFRNINIIE--------DYEFKSPIAYLDPAYSSGGDNTSLCV 299
>gi|48697520|ref|YP_024878.1| gp33 TerL [Burkholderia phage BcepB1A]
gi|47717490|gb|AAT37736.1| gp33 TerL [Burkholderia phage BcepB1A]
Length = 532
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 10/158 (6%)
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
F DEA+ + +++ R I + N LN F + K +
Sbjct: 203 FVDEAAHLENA--QAVDTALAATTNCRIDISSVN--GLNNPFAE--KRFSGRVKVKTMHW 256
Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--D 313
R D +++ ++ ++ V EI + IP +I+ A+ +
Sbjct: 257 RDDPRKDDEWYKKQKQKF--NALVVAQEIDIDYSASAEGVLIPLEWIDAAIDADVKLGLT 314
Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
+ D+A EG D R G +++ WS K
Sbjct: 315 VTGQRFSSLDVADEGKDMNAFGSRLGIRMDYAESWSGK 352
>gi|168704532|ref|ZP_02736809.1| hypothetical protein GobsU_33659 [Gemmata obscuriglobus UQM 2246]
Length = 209
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 14/107 (13%)
Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
+ + VG V DE S D + KS+ + S GWF+
Sbjct: 63 DSQEGVVGFSA--PRLVVIDEGSRVSDELYKSVRPMLAVSKGQ--LLTLSTPFGNQGWFF 118
Query: 239 DIFNIPLED----------WKRYQIDTRTVEGIDSGFHEGIISRYGL 275
DI++ E W+R + + I F E + G
Sbjct: 119 DIWDDSAEGLKRRAKLHEPWQRTAVPASQIPRITPEFLEDERAELGE 165
>gi|118590957|ref|ZP_01548357.1| hypothetical protein SIAM614_19891 [Stappia aggregata IAM 12614]
gi|118436479|gb|EAV43120.1| hypothetical protein SIAM614_19891 [Stappia aggregata IAM 12614]
Length = 526
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 286 GQFPQQEVN---NFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
G F + IP ++++ A R + ID ++ D+A G D+TV+ G
Sbjct: 287 GDFLAARQDHEWQVIPSDWVDLAFERYDQGIDRDEPMTVLAVDVAQGGKDRTVLQPLHGR 346
Query: 341 IIEHIFDWSAKLIQETNQEGCPVGSSI 367
E ++G VGS I
Sbjct: 347 RFETNIVRKGTDT----KDGADVGSLI 369
>gi|211731806|gb|ACJ10127.1| terminase [Bacteriophage APSE-3]
Length = 469
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 47/304 (15%), Positives = 83/304 (27%), Gaps = 75/304 (24%)
Query: 84 AGRGIGKTTLNAWMMLW--------LISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
GRG KT A + L + R M+ I E + L AEV L +
Sbjct: 12 GGRGGMKTVSFAKIALITASMHKRRFLCLREFMNSI-----EDSVHAVLQAEVET-LGLQ 65
Query: 136 PHRHWFEMQSLSLHPSGW-YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
++ S + Y +L I SKH
Sbjct: 66 NRFRILNTYIEGINDSIFKYGQLARNIASIKSKHDFDVA--------------------- 104
Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245
+ +EA + +++ + W N +G Y F P
Sbjct: 105 -WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKAIIDKQGY 161
Query: 246 ----EDW-------KRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
+ + + + + ++ YG + D
Sbjct: 162 YEDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANY---------- 211
Query: 292 EVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
+ I ++E A+ + ++ D A G D+ + R G +IE WS
Sbjct: 212 -EDALIQPEWVEAAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWS 270
Query: 350 AKLI 353
+
Sbjct: 271 EGDV 274
>gi|212499721|ref|YP_002308529.1| terminase [Bacteriophage APSE-2]
gi|238898754|ref|YP_002924436.1| APSE-2 prophage; terminase [Bacteriophage APSE-2]
gi|211731690|gb|ACJ10178.1| terminase [Bacteriophage APSE-2]
gi|229466514|gb|ACQ68288.1| APSE-2 prophage; terminase [Bacteriophage APSE-2]
Length = 469
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 47/304 (15%), Positives = 83/304 (27%), Gaps = 75/304 (24%)
Query: 84 AGRGIGKTTLNAWMMLW--------LISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
GRG KT A + L + R M+ I E + L AEV L +
Sbjct: 12 GGRGGMKTVSFAKIALITASMHKRRFLCLREFMNSI-----EDSVHAVLQAEVET-LGLQ 65
Query: 136 PHRHWFEMQSLSLHPSGW-YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
++ S + Y +L I SKH
Sbjct: 66 NRFRILNTYIEGINDSIFKYGQLARNIASIKSKHDFDVA--------------------- 104
Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245
+ +EA + +++ + W N +G Y F P
Sbjct: 105 -WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKAIIDKQGY 161
Query: 246 ----EDW-------KRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
+ + + + + ++ YG + D
Sbjct: 162 YEDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANY---------- 211
Query: 292 EVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
+ I ++E A+ + ++ D A G D+ + R G +IE WS
Sbjct: 212 -EDALIQPEWVEAAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWS 270
Query: 350 AKLI 353
+
Sbjct: 271 EGDV 274
>gi|221316874|ref|YP_002527821.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|226246930|ref|YP_002776267.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
gi|221237339|gb|ACM10180.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|226201508|gb|ACO38105.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
Length = 450
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 16/157 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+E +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNVETFKTYNFTTYDNVFLSKGFIETQEKLY-KDIPAYKARVLLGEWLASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
E+ M I D A GGD T +
Sbjct: 271 ITEDYMFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|62327097|ref|YP_223885.1| putative large subunit terminase [Lactobacillus phage phiJL-1]
gi|37930114|gb|AAP74512.1| putative large subunit terminase [Lactobacillus phage phiJL-1]
Length = 440
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 49/292 (16%), Positives = 95/292 (32%), Gaps = 34/292 (11%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
RG GK+ A ++ I P ++ + T K++ +A + K + F+
Sbjct: 41 KGSRGSGKSYATAAKVIIDIMMYPYVNWLVTRQYATTQKDSTFATIRKVAHSMGVLDLFK 100
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
L + +Q+ + +P G + +EA
Sbjct: 101 FTKSPLEIT------YKQTGQKVFFRGMDDPLKITSIQP--VTGFICRR----WCEEAYE 148
Query: 203 TP-----DIINKSILGFFTELNPNRFWIMTSNT----RRLNGWFYDIFNIPLEDWKRYQI 253
D + +S+ G ++T N L F+D +
Sbjct: 149 LKSLDAFDTVEESMRGEL-PPGGFYQTVITFNPWSDRHWLKHEFFDDKTK-RNHSRAITT 206
Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
+ + +++ + + + + + AR+ +LG++ E F R+ D
Sbjct: 207 TYKDNDHLNADYVDSLKEMLVRNPNRARVAVLGEWGIAEGLVFDGLFE-----QRDFSYD 261
Query: 314 LYA--PLIMGCDIAGEGGDKTV---VVFRRGNIIEHIFDWSAKLIQETNQEG 360
A P +G D G D T + + N I +I+D K TNQ
Sbjct: 262 EIANLPKSVGLDF-GFKHDPTAGEFIAVDQDNRIVYIYDEFYKQHLLTNQIA 312
>gi|113200627|ref|YP_717790.1| terminase large subunit [Synechococcus phage syn9]
gi|76574526|gb|ABA47091.1| terminase large subunit [Synechococcus phage syn9]
Length = 549
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 83/256 (32%), Gaps = 42/256 (16%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GK+T+ +LW + +++ +AN E+ + L + +Q L
Sbjct: 85 GKSTIVTSYLLWYVLFNANVNVAILANKAA-----TAREMLQRLQLSYENLPKWLQQGIL 139
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII- 207
+ EL S + + R S +F DE + P+ +
Sbjct: 140 QWNRGSLELENGSKILAASTSASAVRGMSFN--------------VIFLDEFAFVPNHVA 185
Query: 208 ---NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
S+ + + I+ S +N FY +++ ++ ++ V G
Sbjct: 186 DQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERKANEYIPTEVHWSEVPGR 243
Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-------- 313
D+ + E I R+E +F V+ I + + + + I +
Sbjct: 244 DAAWKEQTIKNTSEQQ--FRVEFECEF-LGSVDTLISPSKLRTMVYGDPIAEKNGLSMYE 300
Query: 314 ---LYAPLIMGCDIAG 326
++ D++
Sbjct: 301 KTIQGHTYVITADVSR 316
>gi|238790716|ref|ZP_04634478.1| Gp33 TerL [Yersinia frederiksenii ATCC 33641]
gi|238721211|gb|EEQ12889.1| Gp33 TerL [Yersinia frederiksenii ATCC 33641]
Length = 538
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 16/141 (11%)
Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
S + F + K + R D +++ + ++ + + +
Sbjct: 229 STPNGMANSFAE--RRHSGKIKVFTFHWRDDPRKDDAWYQKQVE------NLDPVTVAQE 280
Query: 288 ----FPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
+ IP +++ A++ + DIA EG D R G +
Sbjct: 281 IDINYSASVEGVLIPSAWVQAAINAHEVLGIVPTGQRLGALDIADEGKDTNSFAGRHGFL 340
Query: 342 IEHIFDWSAK--LIQETNQEG 360
+E I +WS K I T Q+
Sbjct: 341 LESIEEWSGKGDDIFGTVQKA 361
>gi|224796473|ref|YP_002641230.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
gi|224497687|gb|ACN53304.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
Length = 450
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 45/313 (14%), Positives = 89/313 (28%), Gaps = 46/313 (14%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ H K S G GKT L +++++ + S
Sbjct: 46 TTKQKEVLFDIESHK----------YSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQ 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS + L ++ K + + + ++ + I
Sbjct: 96 DTNNFIIGNSISLLMTNTIKQIEKICRL------LGIDYQKKKSGQSFCKIAGFELNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
D F + ++ +EA+ +L I
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVLKRL--RKGKSIIIF 196
Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL- 285
+N +F + + +K Y T + F E Y S + +L
Sbjct: 197 DTNPESPAHFFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLY-KHSPAYKARVLY 255
Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNIIEH 344
G++ ++ + D + IM D A GGD T + E
Sbjct: 256 GEW-IVNESSLFNEMIFNQ-------DYEFKSPIMYIDPAFSVGGDNTAICVLE-RTFEK 306
Query: 345 IFDWSAKLIQETN 357
+ + + + N
Sbjct: 307 FYAYIYQDQKPVN 319
>gi|221316998|ref|YP_002533177.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|221237630|gb|ACM10461.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
Length = 450
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++A I D A GGD T + R +
Sbjct: 271 ITD--------DYVFASPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|224593667|ref|YP_002641021.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|224554694|gb|ACN56072.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y+ T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYKFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERIDEK 306
>gi|211731785|gb|ACJ10115.1| terminase [Bacteriophage APSE-7]
Length = 469
Score = 46.7 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 23/183 (12%), Positives = 51/183 (27%), Gaps = 38/183 (20%)
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------- 245
+ +EA + +++ + W N +G Y F P
Sbjct: 105 WVEEAETVSEKSLDTLISTIRKPGSE-LWFSF-NPSEEDGAVYQRFVKPYKAIIDKKGYY 162
Query: 246 ---EDW-------KRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
+ + + + + ++ YG + D
Sbjct: 163 EDDDLYVGNVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANY----------- 211
Query: 293 VNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
+ I +++ A+ + ++ D A G D+ + R G +IE WS
Sbjct: 212 DDALIQPEWVDAAIDAHIKLGFPPRGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSE 271
Query: 351 KLI 353
+
Sbjct: 272 GDV 274
>gi|154247076|ref|YP_001418034.1| hypothetical protein Xaut_3147 [Xanthobacter autotrophicus Py2]
gi|154161161|gb|ABS68377.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
Length = 416
Score = 46.7 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 48/272 (17%), Positives = 87/272 (31%), Gaps = 49/272 (18%)
Query: 82 ISAGRGIGKTTLNA-WMMLWLI-----STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
+ GRG GKT A W+ + + RP I +A + ++ + VS L++
Sbjct: 31 VLGGRGAGKTRAGAEWVRGLALGRPPFAGRPVGRIALVAETMADVREVMVEGVSGLLAVH 90
Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
P + + +S E P++ GP A
Sbjct: 91 PRAERPRWEPTR---------------RRLEWANGAVAQGFSAEDPESLRGPQFA---AA 132
Query: 196 FNDEASGTPDIINKSILGFF------TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
+ DE + K F L ++T+ R + L D
Sbjct: 133 WLDELAK-----WKRAEATFDMLQFGLRLGAQPRQMVTTTPRPTA-----LLRRLLADPS 182
Query: 250 RYQIDTRTVEG---IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
RT + + F +++RYG + + R E+ G+ + + +E
Sbjct: 183 TAVTRARTADNAFHLAPSFLGQVLTRYG-GTRLGRQELDGELIEDRADALFSRPALEA-- 239
Query: 307 SREAIDDLYAPLIMGCDI---AGEGGDKTVVV 335
REA +++ D + G D +V
Sbjct: 240 LREAQVPPLTRIVVAVDPPASSRAGADACGIV 271
>gi|225575978|ref|YP_002724813.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225576296|ref|YP_002725339.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547342|gb|ACN93326.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547454|gb|ACN93434.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 46.7 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+K Y+ T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNTATFKTYKFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
I+ D ++ I D A GGD T + R +
Sbjct: 271 IIQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERVDDK 306
>gi|238027628|ref|YP_002911859.1| Bbp25 [Burkholderia glumae BGR1]
gi|237876822|gb|ACR29155.1| Bbp25 [Burkholderia glumae BGR1]
Length = 486
Score = 46.7 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 284 ILGQFPQQEVN---NFIPHNYIEEAMSRE-AIDDLYAPLI-MGCDIAGEGGDKTVVVFRR 338
+ G F + IP ++ A R A P+ +G D+A G D+++ R
Sbjct: 264 LYGDFAAGREDDPWQVIPSEWVRLAQERWRARSRPRIPMTALGVDVARGGQDQSIYTPRY 323
Query: 339 GN 340
GN
Sbjct: 324 GN 325
>gi|255321082|ref|ZP_05362250.1| gp33 TerL [Acinetobacter radioresistens SK82]
gi|262379515|ref|ZP_06072671.1| bacteriophage TerL protein [Acinetobacter radioresistens SH164]
gi|255301852|gb|EET81101.1| gp33 TerL [Acinetobacter radioresistens SK82]
gi|262298972|gb|EEY86885.1| bacteriophage TerL protein [Acinetobacter radioresistens SH164]
Length = 558
Score = 46.7 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 71/225 (31%), Gaps = 23/225 (10%)
Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
+ P G+ ++ + M I + T + + G M DE +
Sbjct: 169 MKPKGFIEKVHDNYMRIINPDNGATVTGEAGDNI----GRGGRTTMYFL-DEWAFVER-- 221
Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
+++ ++ N N I S + F+ + + + + R +
Sbjct: 222 QEAVDAAISQ-NTNVH-IKGSTPNGIGDKFHQ--DRFSGRYAVFTMAWRDNPDKNWQVEL 277
Query: 268 GIISRYGL--------DSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAP 317
Y D V E+ + IP +++ A+ + +
Sbjct: 278 DGKLIYPWYEKQLATLDDIVLAQEVDIDYAASVEGVLIPSAWVQAAVDAHIKLGIEPSGE 337
Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQEG 360
D+A EG DK R G +++++ WS I T Q+
Sbjct: 338 RNGALDVADEGKDKNSFAARHGIVLQYLDTWSGIGDDIFGTTQKA 382
>gi|195942579|ref|ZP_03087961.1| hypothetical protein Bbur8_07059 [Borrelia burgdorferi 80a]
Length = 450
Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHRQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y+ T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYKFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|203288734|ref|YP_002223670.1| bsr protein [Borrelia duttonii Ly]
gi|201084584|gb|ACH94162.1| bsr protein [Borrelia duttonii Ly]
Length = 330
Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 16/157 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ ++ +EA+ K +L + P T N +F +
Sbjct: 35 ERFRG---SNSAVIYVNEATTLHKETLKEVLKRL-RMKPEFIIFDT-NPDHPEHYFKTDY 89
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ Y T E I F + Y D + + LG++ F N
Sbjct: 90 IDNNTVYSTYNFTTYDNETISKEFIKTQEEIY-KDLPTYKASVLLGEWVANNDAIFRNIN 148
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAG-EGGDKTVVVF 336
IE D + I D A GGD TV+
Sbjct: 149 IIE--------DYEFKSPIAYLDPAYSSGGDNTVLCV 177
>gi|219723016|ref|YP_002474442.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692691|gb|ACL33908.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
Length = 450
Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNMATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|226246851|ref|YP_002776184.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
gi|226202003|gb|ACO38584.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
Length = 450
Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNMATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|203288843|ref|YP_002223837.1| bsr protein [Borrelia duttonii Ly]
gi|201084394|gb|ACH93979.1| bsr protein [Borrelia duttonii Ly]
Length = 450
Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 49/294 (16%), Positives = 91/294 (30%), Gaps = 51/294 (17%)
Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-------- 104
+ Q + + A++ + + K +S G GKT L + T
Sbjct: 47 KKQRKVLSAIEKNNQN----------KVILSGGIASGKTFLA---CYLFLKTLLKNRHLY 93
Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
R G + + NS+ L E++ + ++ + + + Y E+ + +
Sbjct: 94 RKGTNNFILGNSQKAL------EINVIEQFEDLANMLKIPFVPKYSNRSYFEIDSLRVNL 147
Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
Y ++ F ++ ++ +EA+ K L + P
Sbjct: 148 -----------YGGDKIRDFKRFRGSNSAVIYVNEATTLHKETLKEALKRL-RIKPEFIV 195
Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
T N +F + + Y T E I F + Y D + +
Sbjct: 196 FDT-NPDHPEHYFKTDYIDKNTVYSTYNFTTYDNEEISKEFIKTQEELY-KDFPTYKASV 253
Query: 285 -LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG-EGGDKTVVVF 336
LG++ F N IE D + I D A GGD T +
Sbjct: 254 LLGEWVANNDAIFRNINIIE--------DYEFKSPIAYLDPAYSSGGDNTSLCV 299
>gi|85059798|ref|YP_455500.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84780318|dbj|BAE75095.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 483
Score = 46.3 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 5/167 (2%)
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
+ +EA ++ + W+ + L+ + PL+D +
Sbjct: 116 WVEEAEAVTKESWDILIPTIRKPGSE-IWVSFNPKNILDDTYQRFVVNPLDDICLLTVHY 174
Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--REAID 312
+ D D+ G+ P + + I +I A+
Sbjct: 175 TDNPHFPEVLRLEMEECKCKDYDLYLHIWEGE-PVADSDLAIIKPLWIAAAVDAHMTLGF 233
Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
D +G D+A EG D + F +G+++ + +W + ++
Sbjct: 234 DAVGEKRLGFDVADEGEDCNALCFVQGSVVLDLDEWHRGDVIASSNR 280
>gi|239502629|ref|ZP_04661939.1| hypothetical protein AbauAB_09982 [Acinetobacter baumannii AB900]
Length = 414
Score = 46.3 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 89/263 (33%), Gaps = 40/263 (15%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
+ AGR GKT+L+ +++ S +P I +A + K +W ++
Sbjct: 26 VVAGRRWGKTSLSRTLII-SKSRKPRQRIWYVAPTYRMAKQIMWKDL------------- 71
Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
+ P W ++ S+ I+ + T+ +++ PD+ G + DE
Sbjct: 72 ----IEAIPRKWVVKINHSSLSIELVNGTLIELKGADD-PDSLRGVGID---FLVLDEFQ 123
Query: 202 GTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWF--YDIFNIPLE----DWKRYQID 254
+ + + + +I + N + Y P + W+ +Q
Sbjct: 124 DISEEAWTQCLRPTLASTGGHAIFI--GTPKAYNQLYTVYMQGQDPKKVKAGQWQSWQFP 181
Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
T T I E + S + E L F + P + E + D
Sbjct: 182 TITSPFIPESEIEAARADMDEKS--FKQEFLASFETMSGRVYYPFDRKEHVG--KYPFDP 237
Query: 315 YAPLIMGCDIAGEGGD--KTVVV 335
P+ +G D D TV++
Sbjct: 238 KLPIWIGMD---FNIDPMSTVIM 257
>gi|315655961|ref|ZP_07908859.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
gi|315490025|gb|EFU79652.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
Length = 460
Score = 46.3 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 46/280 (16%), Positives = 93/280 (33%), Gaps = 29/280 (10%)
Query: 65 HCHSNVNNSNPTIFKCA--ISAGRGIGKTTLNAWMML-WLISTRPGMSIICIANSETQLK 121
H H+ + PT + GRG GKT A ++ W PG I +A E+ ++
Sbjct: 41 HHHARASQHPPTGAWTEWLLMTGRGWGKTRTAAELVRDWA--KNPGTQIAVVAKKESLVR 98
Query: 122 NTLWA-EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
+ + + S L ++P + + ++ E
Sbjct: 99 SICFEHKTSGLLHVIPKSDQARFNASGGSGRFFLQLKNGSTIYGFG-----------AEV 147
Query: 181 PDTFVGPHNTHGMAVFNDE-ASGTPDIINKSILGFFTE--LNPNRFWIMTSNTRRLNGWF 237
PD G + DE A+ + + + +P+ ++++ + L
Sbjct: 148 PDNLRGFAFDKA---WFDEFAAWNKQTAQEVYDMMWYDLRESPSPQMVISTTPKPLKHV- 203
Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
D+ + P R + + + E + YG + + R E+ G+ +
Sbjct: 204 RDLVSKPGVVITRGHTKD-NLPNLSAIALEKLERDYGK-TRLGRQELAGELIESIEGALW 261
Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIA---GEGGDKTVV 334
++ + R +++G D A EG D T
Sbjct: 262 DVTMFQDPVFRPDTMPPLEDIVVGVDPAVRSSEGADMTAF 301
>gi|87201130|ref|YP_498387.1| hypothetical protein Saro_3118 [Novosphingobium aromaticivorans DSM
12444]
gi|87136811|gb|ABD27553.1| protein of unknown function DUF264 [Novosphingobium aromaticivorans
DSM 12444]
Length = 440
Score = 46.3 bits (108), Expect = 0.008, Method: Composition-based stats.
Identities = 51/269 (18%), Positives = 88/269 (32%), Gaps = 35/269 (13%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
+ AGRG GKT L A + + P I + S + ++ +
Sbjct: 57 VMAGRGFGKTRLGAEWVRKIAEEDPEARIALVGASLHEARSVMVE--------------- 101
Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-- 199
L + W + E S+ YS P++ GP ++H + DE
Sbjct: 102 GESGLLSIDAPWRRPVFESSVRRLVWPNGAQAFLYSAGEPESLRGPQHSHA---WCDEIA 158
Query: 200 ----ASGTPDIINKSIL-GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
S ++L G +P T L D +D +
Sbjct: 159 KWDNGSNRAMATWDNLLMGLRLGRDPRLVATTTPRPVPLVARIMD----EGDDVVVTRGS 214
Query: 255 TRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
T + + F E + +G + + R E+LG+ + V IE A RE
Sbjct: 215 TFENQDNLPRRFVEAMRRTFGGTT-LGRQELLGEMIEDLVGALWSRALIENA--REDAAP 271
Query: 314 LYAPLIMGCDI--AGEGGDKTVVVFRRGN 340
+++G D + G ++V G+
Sbjct: 272 AMTRVVVGVDPPASAHGDACGIIVCGIGD 300
>gi|224020497|ref|YP_002601287.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|223929730|gb|ACN24438.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
Length = 450
Score = 46.3 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 INNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYIFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|114569469|ref|YP_756149.1| hypothetical protein Mmar10_0918 [Maricaulis maris MCS10]
gi|114339931|gb|ABI65211.1| protein of unknown function DUF264 [Maricaulis maris MCS10]
Length = 450
Score = 46.3 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 43/260 (16%), Positives = 74/260 (28%), Gaps = 28/260 (10%)
Query: 84 AGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GKT A W+ + T I + + ++ +
Sbjct: 67 GGRGAGKTRAGAEWVRHRALRTV--SRIALVGPTFNDVREVM------------IEGPSG 112
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
++ L E + + S +S E D GP + + DE +
Sbjct: 113 LKHLGSAMERPRYEASRKRLVFPSGSQAY---AFSAEDADGLRGPQFDYA---WGDEFAA 166
Query: 203 TPDI---INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
PD ++ +G P T ++ +Q
Sbjct: 167 WPDPQRVLDTLRMGVRLGGAPRILLTTTPRPIPALKALVKAWDPRGPIRVTHQPTAANAA 226
Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
+ GF E + + YG S + R E+ G IE A ++
Sbjct: 227 NLAPGFVEALNAAYG-GSMLGRQEVEGLLIDDPDGALWTRPKIEAARLAAGQMPELDRIV 285
Query: 320 MGCDIAGEGG---DKTVVVF 336
+ D GG D+ +V
Sbjct: 286 VALDPPATGGPRSDECGIVV 305
>gi|226315790|ref|YP_002776047.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
gi|226201663|gb|ACO38256.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
Length = 450
Score = 45.9 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKPY-KDIPLYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|11497124|ref|NP_051248.1| hypothetical protein BB_S45 [Borrelia burgdorferi B31]
gi|223987739|ref|YP_002601211.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|6382145|gb|AAF07462.1|AE001576_21 conserved hypothetical protein [Borrelia burgdorferi B31]
gi|223929452|gb|ACN24166.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
Length = 450
Score = 45.9 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 50/304 (16%), Positives = 97/304 (31%), Gaps = 42/304 (13%)
Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS--- 103
+F + QL ++ +V NN IF I++ GKT L ++ L +
Sbjct: 36 NFDKFEEKQL-TLKQKNVIKSIKKNNEKKIIFSGGIAS----GKTYLACYLFLKSLIENK 90
Query: 104 --TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
+ I NS+ ++ + + K + ++ + H + Y +
Sbjct: 91 KLYSSDTNNFIIGNSQRSVEVNVLGQFEKLCKL------LKIPYIPRHTNNSYILIDSLR 144
Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
+ + + F G ++ +F +EA+ + +L
Sbjct: 145 INLYGGDKASDF--------ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQE 192
Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
T N +F + + +K Y T + GF E Y D +
Sbjct: 193 TIIFDT-NPDHPEHYFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYK 250
Query: 282 IEI-LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--R 337
+ LG++ + F N + D ++ I D A GGD T + R
Sbjct: 251 ARVLLGEWIASTDSIFTQINITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMER 302
Query: 338 RGNI 341
+
Sbjct: 303 VDDK 306
>gi|326783799|ref|YP_004324193.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM7]
gi|310003811|gb|ADO98206.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM7]
Length = 552
Score = 45.9 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 80/257 (31%), Gaps = 43/257 (16%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GK+T +L ++I +AN ++ L + LP W MQ +
Sbjct: 86 GKSTTVVSYLLHYAIFNDSVTIGILANKAQTARDLL-GRLQIAYENLPK--W--MQQGII 140
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE----ASGTP 204
+ EL +S I + R S +F DE A+
Sbjct: 141 AWNKGSMELENKSKIIAASTSASAVRGMSFN--------------IIFLDEFAFVANHLA 186
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI---PLEDWKRYQIDTRTVEGI 261
D S+ + + I+ S R +N FY +++ ++ + V G
Sbjct: 187 DDFFSSVYPTISS-GKSTKVIIVSTPRGMN-HFYRLWHDAELGRNEYVTTDVHWSEVPGR 244
Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI---------- 311
D + E I R+E +F V+ I + ++ + E I
Sbjct: 245 DEAWKEQTIKNTSE--AQFRVEFECEF-LGSVDTLIAPSKLKTMVYDEPINTGKRGGEIY 301
Query: 312 --DDLYAPLIMGCDIAG 326
+ D+A
Sbjct: 302 QNPIEKHNYSITVDVAR 318
>gi|226246889|ref|YP_002776229.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
gi|226202275|gb|ACO37943.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 45.9 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 49/304 (16%), Positives = 96/304 (31%), Gaps = 42/304 (13%)
Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS--- 103
+F + QL ++ +V NN I I++ GKT L ++ L +
Sbjct: 36 NFDKFEEKQL-TLKQKNVIKSIKKNNEKKIILSGGIAS----GKTYLACYLFLKSLIENK 90
Query: 104 --TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
+ I NS+ ++ + + K + ++ + H + Y +
Sbjct: 91 KLYSSDTNNFIIGNSQRSVEVNVLGQFEKLCKL------LKIPYIPRHTNNLYILIDSLR 144
Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
+ + + F G ++ +F +EA+ + +L
Sbjct: 145 INLYGGDKASDF--------ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQE 192
Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
T N +F + + +K Y T + GF E Y D +
Sbjct: 193 TIIFDT-NPDHPEHYFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYK 250
Query: 282 IEI-LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--R 337
+ LG++ + F N + D ++ I D A GGD T + R
Sbjct: 251 ARVLLGEWIASTDSIFTQINITD--------DYIFTSPIAYLDPAFSVGGDNTALCVMER 302
Query: 338 RGNI 341
+
Sbjct: 303 VDDK 306
>gi|218555117|ref|YP_002388030.1| hypothetical protein ECIAI1_2647 [Escherichia coli IAI1]
gi|218361885|emb|CAQ99485.1| conserved hypothetical protein from bacteriophage origin
[Escherichia coli IAI1]
Length = 540
Score = 45.9 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
+ R D ++ + +D+ V + L + IP +++ A+
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306
Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
+ + D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLMENVREWSGVGSDIYQSVEK 361
>gi|330910791|gb|EGH39301.1| phage terminase, large subunit [Escherichia coli AA86]
Length = 540
Score = 45.9 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
+ R D ++ + +D+ V + L + IP +++ A+
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306
Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
+ + D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361
>gi|203288609|ref|YP_002223516.1| bsr protein [Borrelia duttonii Ly]
gi|201084316|gb|ACH93904.1| bsr protein [Borrelia duttonii Ly]
Length = 450
Score = 45.9 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 47/291 (16%), Positives = 95/291 (32%), Gaps = 49/291 (16%)
Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-----RPGMS 109
Q E + +D + S + IF IS+ GKT L +++++ L+ +
Sbjct: 49 QKEVLRDIDNNFCSKI------IFNGGISS----GKTFLASYLLIKLLIINRDHYHKDTN 98
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
+ +S L ++ K S+L + LL+ S +
Sbjct: 99 NFIVGSSIGTLLANTLKQIEKICSLLNIEY-----------------LLKDSRQVTCTIA 141
Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
+T Y + D+F ++ V+ +EA+ I+ + P T N
Sbjct: 142 GLTLNIYGGKNIDSFTKIRGSNSALVYVNEATLMHKETLLEIMKRLRQK-PGIIIFDT-N 199
Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQF 288
+F + + ++ Y + F + + Y + + + LG++
Sbjct: 200 PDHPAHYFKVDYIDNRDVYRTYNFNIYDNPLNSKDFIKTQEAIY-KNLSAYKARVLLGEW 258
Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMGCDIAGE-GGDKTVVVF 336
I+ + ++ Y IM D A G D T +
Sbjct: 259 ----------TASIDSCFNEVILNCEYTFKSPIMYIDPAFSVGMDNTAICV 299
>gi|224983831|ref|YP_002641150.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|224554243|gb|ACN55633.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 45.9 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y+ T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYKFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|11497063|ref|NP_051203.1| hypothetical protein BB_P42 [Borrelia burgdorferi B31]
gi|6382084|gb|AAF07402.1|AE001575_3 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 45.9 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y+ T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYKFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|11497292|ref|NP_051420.1| hypothetical protein BB_L43 [Borrelia burgdorferi B31]
gi|6382313|gb|AAF07626.1|AE001580_11 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 45.9 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y+ T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYKFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|163792602|ref|ZP_02186579.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199]
gi|159182307|gb|EDP66816.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199]
Length = 422
Score = 45.9 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 51/260 (19%), Positives = 87/260 (33%), Gaps = 28/260 (10%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
I AGRG GKT A + L + I +A + ++ + + +L
Sbjct: 45 ILAGRGFGKTRTGAEWVRGLAESGRARRIALVAETAADARDVM---IEGESGLLAC---- 97
Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
+ W E S + ++S + PD GP A + DE +
Sbjct: 98 --------CAPWGRPKYEPSKRRVTWPNGAIATSFSADDPDQLRGPQFD---AAWADEIA 146
Query: 202 G--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
+ +LG +P + T+ + W + P
Sbjct: 147 KWRYEAAWDNLMLGLRLGADP--RCVATTTP-KPRAWLARLMADP-GTVVTRGATRENAG 202
Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
+ GF + I++RY + + R EI G+F + IE A + A +I
Sbjct: 203 NLAPGFLDQILARY-AGTRLGRQEIDGEFLTEIPGALWTRTLIEGARALPGAVPGLARII 261
Query: 320 MGCDIA---GEGGDKTVVVF 336
+ D A G D+T +V
Sbjct: 262 VAVDPAVTSGSDSDETGIVV 281
>gi|254160843|ref|YP_003043951.1| hypothetical protein ECB_00733 [Escherichia coli B str. REL606]
gi|253972744|gb|ACT38415.1| conserved hypothetical protein [Escherichia coli B str. REL606]
Length = 540
Score = 45.9 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
+ R D ++ + +D+ V + L + IP +++ A+
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306
Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
+ + D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361
>gi|268589862|ref|ZP_06124083.1| phage terminase, large subunit, PBSX family [Providencia rettgeri
DSM 1131]
gi|291314845|gb|EFE55298.1| phage terminase, large subunit, PBSX family [Providencia rettgeri
DSM 1131]
Length = 470
Score = 45.9 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 33/267 (12%), Positives = 75/267 (28%), Gaps = 21/267 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + G + +EA
Sbjct: 68 TIEREGYNNEFEIQRTMIKHLGTGAEFMFYGIKNNPTKIKSLEGVD-----VCWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + N W+ + L+ + P +D +
Sbjct: 123 VTKESWDILIPTIRKPNSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTANYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ +I
Sbjct: 182 DVLRLEMEECKRKNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAIIA 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFD 347
D + GGD R G++++ I +
Sbjct: 242 THDPSDVGGDAKGYAMRHGSVVKRISE 268
>gi|194430118|ref|ZP_03062621.1| gp33 TerL [Escherichia coli B171]
gi|215487586|ref|YP_002330017.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|260845222|ref|YP_003223000.1| putative terminase large subunit [Escherichia coli O103:H2 str.
12009]
gi|194411828|gb|EDX28147.1| gp33 TerL [Escherichia coli B171]
gi|215265658|emb|CAS10061.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|257760369|dbj|BAI31866.1| predicted terminase large subunit [Escherichia coli O103:H2 str.
12009]
gi|309702924|emb|CBJ02255.1| putative phage gp33 TerL [Escherichia coli ETEC H10407]
gi|323159191|gb|EFZ45181.1| gp33 TerL [Escherichia coli E128010]
Length = 540
Score = 45.9 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
+ R D ++ + +D+ V + L + IP +++ A+
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306
Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
+ + D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361
>gi|312147626|gb|ADQ30287.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 45.9 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATALHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|291283815|ref|YP_003500633.1| hypothetical protein G2583_3121 [Escherichia coli O55:H7 str.
CB9615]
gi|290763688|gb|ADD57649.1| hypothetical protein G2583_3121 [Escherichia coli O55:H7 str.
CB9615]
Length = 540
Score = 45.9 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
+ R D ++ + +D+ V + L + IP +++ A+
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306
Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
+ + D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361
>gi|297848822|ref|XP_002892292.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
lyrata]
gi|297338134|gb|EFH68551.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
lyrata]
Length = 1406
Score = 45.5 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 41 KGKPLEHFSQPHRW----QLEFMEAVDVHCHSNVNNSNPTIFKCAISAG-----R--GIG 89
+G + Q E E + + + + F+ + G G G
Sbjct: 805 EGTVWDKIPGVKSQMYPHQQEGFEFIWKNLAGTILLNELKDFENSDETGGCIMSHAPGTG 864
Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLSMLPHRHWFEMQSLSL 148
KT L + + P + IA + L WA E KW +P + +
Sbjct: 865 KTRLTIIFLQAYLQCFPDCKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDFTGK 921
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
S L++++ S + + YS + + +G
Sbjct: 922 ESSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILG 959
>gi|226246703|ref|YP_002776000.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|226202392|gb|ACO38050.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 45.5 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 49/307 (15%), Positives = 97/307 (31%), Gaps = 42/307 (13%)
Query: 44 PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
L +F + QL ++ +V NN I I++ GKT L ++ L +
Sbjct: 33 SLINFDKFEEKQL-TLKQKNVIKSIKKNNEKKIILSGGIAS----GKTYLACYLFLKSLI 87
Query: 104 -----TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
+ I NS+ ++ + + K + ++ + + + Y +
Sbjct: 88 ENKKLYSSDTNNFIIGNSQRSVEVNVLGQFEKLCKL------LKIPYIPRYTNNSYILID 141
Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
+ + + F G ++ +F +EA+ + +L
Sbjct: 142 SLRINLYGGDKASDF--------ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RC 189
Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
T N +F + + +K Y T + GF E Y D
Sbjct: 190 GQETIIFDT-NPDHPEHYFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIP 247
Query: 279 VARIEI-LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
+ + LG++ + F N + D ++ I D A GGD T +
Sbjct: 248 SYKARVLLGEWIASTDSIFTQINITD--------DYVFTSPIAYLDPAFSVGGDNTALCV 299
Query: 337 --RRGNI 341
R +
Sbjct: 300 MERVDDK 306
>gi|324114526|gb|EGC08494.1| hypothetical protein ERIG_00518 [Escherichia fergusonii B253]
Length = 540
Score = 45.5 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
+ R D ++ + +D+ V + L + IP +++ A+
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306
Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
+ + D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361
>gi|300824951|ref|ZP_07105051.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|300522580|gb|EFK43649.1| conserved hypothetical protein [Escherichia coli MS 119-7]
Length = 540
Score = 45.5 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 13/175 (7%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
+ R D ++ + +D+ V + L + IP +++ A+
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306
Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
+ + D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361
>gi|297520464|ref|ZP_06938850.1| hypothetical protein EcolOP_22727 [Escherichia coli OP50]
Length = 313
Score = 45.5 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS--REAID 312
R D ++ + +D+ V + L + IP +++ A+ +
Sbjct: 28 RDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKLGI 85
Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
+ D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 86 QPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 134
>gi|195942433|ref|ZP_03087815.1| hypothetical protein Bbur8_06259 [Borrelia burgdorferi 80a]
Length = 450
Score = 45.5 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPLYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|219723069|ref|YP_002474484.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219693000|gb|ACL34209.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|312147710|gb|ADQ30370.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 45.5 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHRQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 INNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|255929035|ref|YP_003097347.1| DNA terminase packaging enzyme large subunit [Synechococcus phage
S-RSM4]
gi|255705321|emb|CAR63310.1| DNA terminase packaging enzyme large subunit [Synechococcus phage
S-RSM4]
Length = 550
Score = 45.5 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 52/344 (15%), Positives = 99/344 (28%), Gaps = 61/344 (17%)
Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
++++ E + + F ++ P + + +Q E + D H +
Sbjct: 24 TKKQIDEWIKCKNDPIYFAMNYIQIISLDEGLVPFKMYD----FQKEILR--DFHENRFN 77
Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
P GK+T +L+ ++I +AN + E+
Sbjct: 78 IAKLPRQ----------TGKSTTVVAYLLYYAIFYDSVNIGILANKAS-----TARELLG 122
Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
L + MQ L + EL S + + R S
Sbjct: 123 RLQLAYENLPKWMQHGILVWNKGNVELENGSKILAASTSASAVRGMSFN----------- 171
Query: 191 HGMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NI 243
+F DE + P+ + S+ T + I+ S +N FY ++
Sbjct: 172 ---ILFLDEFAFVPNHVAEQFFASVYPTITS-GKSTKVIIISTPNGMN-HFYKMWEDARR 226
Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYI 302
D+ ++ V G D+ + E I S E F + I +
Sbjct: 227 GKNDYVTNEVHWSQVPGRDAKWKEETIKN---TSPRQFAQEFECDF-LGSADTLISPAKL 282
Query: 303 E-----------EAMSREAIDDLYAPLIMGCDIAGE-GGDKTVV 334
+ + I+ D+A GGD +
Sbjct: 283 QNIPFHDPIQSNAGLDVYERVQKDHEYIITVDVARGIGGDYSAF 326
>gi|111074104|ref|YP_709233.1| hypothetical protein BAPKO_4029 [Borrelia afzelii PKo]
gi|110891215|gb|ABH02376.1| hypothetical protein BAPKO_4029 [Borrelia afzelii PKo]
Length = 450
Score = 45.5 bits (106), Expect = 0.014, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F +
Sbjct: 212 IDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDSIFTQID 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERIDDK 306
>gi|312148837|gb|ADQ31485.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|312148805|gb|ADQ31454.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|312147637|gb|ADQ30298.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|312147604|gb|ADQ30266.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|224590670|ref|YP_002640676.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|224553765|gb|ACN55167.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|224983785|ref|YP_002641105.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|224553986|gb|ACN55383.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|195942842|ref|ZP_03088224.1| hypothetical protein Bbur8_08565 [Borrelia burgdorferi 80a]
gi|312150044|gb|ADQ30103.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
N40]
Length = 450
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|225622041|ref|YP_002724986.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
gi|225546350|gb|ACN92359.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
Length = 450
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|225576422|ref|YP_002725451.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|225547005|gb|ACN92996.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 450
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|226322171|ref|ZP_03797692.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
gi|226232426|gb|EEH31184.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|224022662|ref|YP_002606275.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|224593632|ref|YP_002640950.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
gi|223929246|gb|ACN23964.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|224554688|gb|ACN56067.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|219723193|ref|YP_002474612.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|224591572|ref|YP_002640899.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
gi|219693035|gb|ACL34243.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|224554907|gb|ACN56281.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|322420465|ref|YP_004199688.1| hypothetical protein GM18_2968 [Geobacter sp. M18]
gi|320126852|gb|ADW14412.1| hypothetical protein GM18_2968 [Geobacter sp. M18]
Length = 507
Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 13/204 (6%)
Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
GR +GK+ + + L T G + A + L + E+ L P
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTIIE-EIEFQLDTNPDLMNSIAL 113
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
+ P+ S Y Y D F H V+ DE +
Sbjct: 114 TKYGKPNIHRKPYFRLEFTNGSVLYFRPAGAYG----DAFRSLHVGR---VWVDEGAWLT 166
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
+ K++ + T N R ++ + + ++ +
Sbjct: 167 ERAWKALRQCL-KAGGTLRIYSTPNGLRDTTYYRLT---SSDQFHVFRWPSWLNPLWTED 222
Query: 265 FHEGIISRYG-LDSDVARIEILGQ 287
++ YG DS + E+ G+
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGE 246
>gi|191172603|ref|ZP_03034142.1| gp33 TerL [Escherichia coli F11]
gi|190907076|gb|EDV66676.1| gp33 TerL [Escherichia coli F11]
gi|324014340|gb|EGB83559.1| hypothetical protein HMPREF9533_01599 [Escherichia coli MS 60-1]
Length = 540
Score = 45.1 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 11/164 (6%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
+ R D ++ + +D+ V + L + IP +++ A+
Sbjct: 249 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDA 306
Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
+ + D+A EG DK R G ++E++ +WS
Sbjct: 307 HIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350
>gi|203288341|ref|YP_002223391.1| bsr protein [Borrelia recurrentis A1]
gi|201085561|gb|ACH95134.1| bsr protein [Borrelia recurrentis A1]
Length = 412
Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 47/291 (16%), Positives = 93/291 (31%), Gaps = 49/291 (16%)
Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-----RPGMS 109
Q E + +D + S + IF IS+ GKT L +++++ L+ +
Sbjct: 11 QKEVLRDIDNNFCSKI------IFNGGISS----GKTFLASYLLIKLLIINRDNYHKDTN 60
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
+S L ++ K S+L + LL+ S +
Sbjct: 61 NFIFGSSIGTLLANTLKQIEKICSLLNIEY-----------------LLKDSRQVTCTIA 103
Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
+T Y + D+F ++ V+ +EA+ I+ + P T N
Sbjct: 104 GLTLNIYGGKNIDSFTKIRGSNSALVYVNEATLMHKETLLEIMKRLRQK-PGIIIFDT-N 161
Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQF 288
+F + + ++ Y F + + Y + + + LG++
Sbjct: 162 PDHPAHYFKVDYIDNRDVYRTYNFSIYDNPLNSKDFIKTQEAIY-KNLSAYKARVLLGEW 220
Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMGCDIAGE-GGDKTVVVF 336
I+ + ++ Y IM D A G D T +
Sbjct: 221 ----------TASIDSCFNEVILNCEYTFKSPIMYIDPAFSVGMDNTAICV 261
>gi|226315871|ref|YP_002776346.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
gi|226202080|gb|ACO37753.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 49/304 (16%), Positives = 95/304 (31%), Gaps = 42/304 (13%)
Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR- 105
+F + QL ++ +V NN I I++ GKT L ++ L +
Sbjct: 36 NFDKFEEKQL-TLKQKNVIKSIKKNNEKKIILSGGIAS----GKTYLACYLFLKSLIANK 90
Query: 106 ----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
+ I NS+ ++ + + K ++ + H + Y +
Sbjct: 91 NLYSSDTNNFIIGNSQRSVEVNVLGQFEKLCKR------LKIPYIPRHTNNSYILIDSLR 144
Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
+ + + F G ++ +F +EA+ + +L
Sbjct: 145 INLYGGDKASDF--------ERFRG---SNSALIFVNEATTLHRQTLEEVLKRL-RCGQE 192
Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
T N +F + + +K Y T + GF E Y D +
Sbjct: 193 TIIFDT-NPDHPEHYFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYK 250
Query: 282 IEI-LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--R 337
+ LG++ + F N + D ++ I D A GGD T + R
Sbjct: 251 ARVLLGEWIASTDSIFTQINITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMER 302
Query: 338 RGNI 341
+
Sbjct: 303 VDDK 306
>gi|58532911|ref|YP_195134.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-PM2]
gi|58331378|emb|CAF34164.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-PM2]
Length = 548
Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 55/343 (16%), Positives = 110/343 (32%), Gaps = 59/343 (17%)
Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
++++ E + A + F ++ P + +Q E + + H +
Sbjct: 23 TKEQVKEWIKCANDPVYFTKNYVKIVSLDEGLVPFKM----WDFQEELI--MKFHKNRFN 76
Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
P GK+T +L + ++I +AN + ++ L A ++
Sbjct: 77 IAKLPRQ----------TGKSTTVVSYLLHYLIFNDNVNIGILANKASTARDLL-ARLAT 125
Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
LP W +Q + + EL S + + R S
Sbjct: 126 AYENLPK--W--IQQGVVVWNKGNIELENGSKILAASTSASAVRGMSFN----------- 170
Query: 191 HGMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NI 243
+F DE + P+ I S+ T + I+ S + +N FY ++
Sbjct: 171 ---IIFLDEFAFVPNHIADSFFASVYPTITS-GKSTKVIIISTPQGMN-HFYKMWVDATN 225
Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
+ +++ V G D + E I E +F V+ I + ++
Sbjct: 226 GRNGYTFHEVHWSQVPGRDEKWKEETIKNTSERQ--FTQEFECEF-LGSVDTLIAASKLK 282
Query: 304 E-----AMSREAIDDLYAPL------IMGCDIAGE-GGDKTVV 334
+ R D+Y +M D++ GGD +
Sbjct: 283 ALVFNDPIKRNKGLDIYEEPKEKSEYLMTVDVSRGIGGDYSAF 325
>gi|302343251|ref|YP_003807780.1| hypothetical protein Deba_1821 [Desulfarculus baarsii DSM 2075]
gi|301639864|gb|ADK85186.1| conserved hypothetical protein [Desulfarculus baarsii DSM 2075]
Length = 507
Score = 45.1 bits (105), Expect = 0.017, Method: Composition-based stats.
Identities = 32/204 (15%), Positives = 67/204 (32%), Gaps = 13/204 (6%)
Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
GR +GK+ + + L T G + A + L + E+ L P M
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTIIE-EIEFQLDTNPD----LMN 109
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
S++L G + ++ + ++ + D F H V+ DE +
Sbjct: 110 SIALTKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLT 166
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
+ K++ + T N R ++ + + ++ +
Sbjct: 167 ERAWKALRQCL-KAGGTLRIYSTPNGLRDTTYYRLT---SSDQFHVFRWPSWLNPLWTED 222
Query: 265 FHEGIISRYG-LDSDVARIEILGQ 287
++ YG DS + E+ G+
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGE 246
>gi|116751218|ref|YP_847905.1| hypothetical protein Sfum_3801 [Syntrophobacter fumaroxidans MPOB]
gi|116700282|gb|ABK19470.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB]
Length = 507
Score = 45.1 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 32/204 (15%), Positives = 67/204 (32%), Gaps = 13/204 (6%)
Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
GR +GK+ + + L T G + A + L + E+ L P M
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTIIE-EIEFQLDSNPD----LMN 109
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
S++L G + ++ + ++ + D F H V+ DE +
Sbjct: 110 SIALTKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLT 166
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
+ K++ + T N R ++ + + ++ +
Sbjct: 167 ERAWKALRQCL-KAGGTLRIYSTPNGLRDTTYYRLT---SSDQFHVFRWPSWLNPLWTED 222
Query: 265 FHEGIISRYG-LDSDVARIEILGQ 287
++ YG DS + E+ G+
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGE 246
>gi|194445851|ref|YP_002040314.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
SL254]
gi|194404514|gb|ACF64736.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
SL254]
Length = 540
Score = 45.1 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 15/176 (8%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
+ R+ D ++ + +D+ V + L + IP ++++ A+
Sbjct: 249 VFTFHWRSDPRKDDEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSDWVQAAVDA 306
Query: 308 --REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
R I L D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 307 HIRLGIQPTGKRLGA-MDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361
>gi|62181180|ref|YP_217597.1| hypothetical protein SC2610 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62128813|gb|AAX66516.1| orf, partial conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|322715669|gb|EFZ07240.1| hypothetical protein SCA50_2790 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 540
Score = 45.1 bits (105), Expect = 0.018, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 15/176 (8%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
+ R+ D ++ + +D+ V + L + IP ++++ A+
Sbjct: 249 VFTFHWRSDPRKDDEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSDWVQAAVDA 306
Query: 308 --REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
R I L D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 307 HIRLGIQPTGKRLGA-MDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361
>gi|291336011|gb|ADD95601.1| large terminase protein [uncultured phage MedDCM-OCT-S09-C7]
Length = 526
Score = 45.1 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 93/274 (33%), Gaps = 48/274 (17%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE-VSKWLSMLPHRHW 140
+ A R GK+ + +LW + P +++ +AN K + E +++ ++ML +
Sbjct: 80 VLASRQSGKSITSCAYLLWFLLFNPEVTVAVLAN-----KGAIAREMIARMVTMLESVPF 134
Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
F + + + E S + + + + R S ++ DE
Sbjct: 135 FLQPGVKI-LNKGSIEFANDSKVVAAATSSSSIRGLSIN--------------LLYLDEF 179
Query: 201 SGTPDI-INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED---WKRYQIDTR 256
+ D + + I+TS + FY I+ + D +K + I+
Sbjct: 180 AFVDDAETFYTATYPVVTSGKDSKVIITSTANGVGNMFYKIYESAVHDQSEYKHFLINWF 239
Query: 257 TVEGIDSGFHE---------GIISRYG------LDSDVARIEILGQFPQQEVNNFIPHNY 301
V G D + + YG ++ + +LG ++ ++
Sbjct: 240 DVPGRDEEWKKETIANTSEAQFEQEYGNSFLGTGNTLINSNTLLGLMSKE-------PDW 292
Query: 302 IEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVV 334
++ + I D++ G G D +
Sbjct: 293 NKDGVKVYEKPKEGHTYITTVDVSKGRGIDYSTF 326
>gi|332884414|gb|EGK04674.1| hypothetical protein HMPREF9456_03377 [Dysgonomonas mossii DSM
22836]
Length = 450
Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 14/152 (9%)
Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWI--MTS--NTRRL--NGWFYDIFNIPL--EDW 248
DE S + ++ I M N + FY + +D
Sbjct: 133 IDENSQITEKCWNIVMSRIRHDVAKNGLIPKMFGACNPTKNFVYNRFYKPHRDGILPDDK 192
Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQFPQQEVNNFIPHNYIEEAMS 307
Q +D + E + + ++R +L G++ + + + ++ Y +
Sbjct: 193 AFIQALVTDNPFVDKFYIENLKNL----DPISRARLLDGEW-EYDDDPYVLMQYEKIVDL 247
Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
P M D+A G D T + G
Sbjct: 248 FTNSHVSGGPRYMTIDVARLGKDDTTIRIWEG 279
>gi|94497317|ref|ZP_01303888.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58]
gi|94423180|gb|EAT08210.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58]
Length = 437
Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 30/259 (11%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
AGRG GKT A + + P I + S + ++ + S L++ PH
Sbjct: 58 AGRGFGKTRAGAEWVRGIAEADPAARIALVGASLGEARSVMVEGESGLLAIAPH------ 111
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE---- 199
W ++ + + P+ GP +HG + DE
Sbjct: 112 ---------WARPAYAPALRRLTWPNGAVAMLFGAADPEGLRGPQFSHG---WADEIAKW 159
Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
ASG + ++G +P T L + +D + T E
Sbjct: 160 ASGEA-AWHNLMMGMRLGRDPRVLVTTTPRPVPLV---RSLVARDGDDVVVTRGRTADNE 215
Query: 260 -GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
+ GF + + YG + + R E+ G+ ++ IE+ + + +
Sbjct: 216 ANLAPGFVAAMTAGYG-GTRLGRQELDGELIEEVEGALWTRALIEQC-RVVHVPGVLTRV 273
Query: 319 IMGCD-IAGEGGDKTVVVF 336
++ D A GGD +V
Sbjct: 274 VVAVDPPASVGGDACGIVV 292
>gi|224535035|ref|ZP_03675589.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
gi|224513696|gb|EEF84036.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
Length = 379
Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERIDDK 306
>gi|216968428|ref|YP_002333693.1| phage terminase, large subunit, pbsx family [Borrelia afzelii
ACA-1]
gi|216752682|gb|ACJ73366.1| phage terminase, large subunit, pbsx family [Borrelia afzelii
ACA-1]
Length = 450
Score = 44.7 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERIDDK 306
>gi|78356952|ref|YP_388401.1| hypothetical protein Dde_1909 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219357|gb|ABB38706.1| hypothetical protein Dde_1909 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 507
Score = 44.7 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 13/204 (6%)
Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
GR +GK+ + + L T G + A + L + E+ L P M
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTIIE-EIEFQLDTNPD----LMN 109
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
S++L G + ++ + ++ + D F H V+ DE +
Sbjct: 110 SIALTKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLT 166
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
+ K++ + T N R ++ E + ++ +
Sbjct: 167 ERAWKALRQCL-KAGGTLRIYSTPNGLRDTTYYRLT---SSEQFHVFRWPSWLNPLWTED 222
Query: 265 FHEGIISRYG-LDSDVARIEILGQ 287
++ YG DS + E+ G+
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGE 246
>gi|300088757|ref|YP_003759279.1| hypothetical protein Dehly_1680 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528490|gb|ADJ26958.1| conserved hypothetical protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 507
Score = 44.7 bits (104), Expect = 0.023, Method: Composition-based stats.
Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 13/204 (6%)
Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
GR +GK+ + + L T G + A + L + E+ L P M
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTIIE-EIEFQLDSNPD----LMN 109
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
S++L G + ++ + ++ + D F H V+ DE +
Sbjct: 110 SIALTKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLT 166
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
+ K++ + T N R ++ E + ++ +
Sbjct: 167 ERAWKALRQCL-KAGGTLRIYSTPNGLRDTTYYRLT---SSEQFHVFRWPSWLNPLWTED 222
Query: 265 FHEGIISRYG-LDSDVARIEILGQ 287
++ YG DS + E+ G+
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGE 246
>gi|216997755|ref|YP_002333847.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
gi|216752400|gb|ACJ73182.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
Length = 450
Score = 44.7 bits (104), Expect = 0.024, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDSIFAQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERIDDK 306
>gi|78355964|ref|YP_387413.1| hypothetical protein Dde_0917 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78218369|gb|ABB37718.1| hypothetical protein Dde_0917 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 507
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 13/204 (6%)
Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
GR +GK+ + + L T G + A + L + E+ L P M
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLVAAPHQGHLDTIIE-EIEFQLDTNPD----LMN 109
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
S++L G + ++ + ++ + D F H V+ DE +
Sbjct: 110 SIALTKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLT 166
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
+ K++ + T N R ++ E + ++ +
Sbjct: 167 ERAWKALRQCL-KAGGTLRIYSTPNGLRDTTYYRLT---SSEQFHVFRWPSWLNPLWTED 222
Query: 265 FHEGIISRYG-LDSDVARIEILGQ 287
++ YG DS + E+ G+
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGE 246
>gi|195942518|ref|ZP_03087900.1| hypothetical protein Bbur8_06704 [Borrelia burgdorferi 80a]
gi|312149990|gb|ADQ30051.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 450
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 16/157 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+E +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNVETFKTYNFTTYDNVFLSKGFIETQEKLY-KDIPAYKARVLLGEWLASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
E+ M I D GGD T +
Sbjct: 271 ITEDYMFTSP--------IAYLDPTFSVGGDNTALCV 299
>gi|216969097|ref|YP_002333737.1| PBSX family phage termninase large subunit [Borrelia afzelii ACA-1]
gi|216753027|gb|ACJ73621.1| phage terminase, large subunit, PBSX family [Borrelia afzelii
ACA-1]
Length = 450
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYDFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERIDDK 306
>gi|211731761|gb|ACJ10100.1| terminase [Bacteriophage APSE-4]
Length = 469
Score = 44.3 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 23/183 (12%), Positives = 50/183 (27%), Gaps = 38/183 (20%)
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------- 247
+ +EA + +++ + W N +G Y F P +
Sbjct: 105 WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYRRFVKPYKAIIDKQGYY 162
Query: 248 ------------WKRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
+ + + ++ YG + D
Sbjct: 163 EDDEVYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANY----------- 211
Query: 293 VNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
+ I +++ A+ + ++ D A G D+ + R G +IE WS
Sbjct: 212 GDALIQPEWVDAAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSE 271
Query: 351 KLI 353
+
Sbjct: 272 GDV 274
>gi|218781804|ref|YP_002433122.1| hypothetical protein Dalk_3968 [Desulfatibacillum alkenivorans
AK-01]
gi|218763188|gb|ACL05654.1| protein of unknown function DUF264 [Desulfatibacillum alkenivorans
AK-01]
Length = 443
Score = 44.3 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 60/202 (29%), Gaps = 34/202 (16%)
Query: 79 KCAISAGRG-IGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLS 133
+ ++ GKT A + ++ P IA Q K+ +W + K+
Sbjct: 37 RFSVLVCHRRFGKT--VAAVNELIMKACQNPLPAPRYAYIAPLYKQAKSVVWDYLKKFAG 94
Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
+ + H + +L + IT + PD G + +
Sbjct: 95 AI--------NGTTFHETELRCDLPNGA--------RITLLGA--DNPDRLRGIYLDGAV 136
Query: 194 AVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDI--FNIPLEDWKR 250
DE + P+ + + I ++ W M T R + FYD+ F DW
Sbjct: 137 L---DEMAQMPERVWGEIIRPALSD---RLGWAMFIGTPRGHNAFYDLYQFARSDPDWFC 190
Query: 251 YQIDTRTVEGIDSGFHEGIISR 272
+ +
Sbjct: 191 AMYRASETGIVGRDELDAAKKE 212
>gi|224582844|ref|YP_002636642.1| hypothetical protein SPC_1035 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467371|gb|ACN45201.1| hypothetical protein SPC_1035 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 540
Score = 44.3 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 15/176 (8%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
+ R+ D ++ + +D+ V + L + IP ++++ A+
Sbjct: 249 VFTFHWRSDPRKDDEWYRRECEK--IDNPVVVAQELDLNYSASAEGILIPSDWVQAAVDA 306
Query: 308 --REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
R I L D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 307 HIRLGIQPTGKRLGA-MDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 361
>gi|308173233|ref|YP_003919938.1| PBSX terminase large subunit [Bacillus amyloliquefaciens DSM 7]
gi|307606097|emb|CBI42468.1| PBSX terminase (large subunit)) [Bacillus amyloliquefaciens DSM 7]
gi|328553846|gb|AEB24338.1| PBSX terminase (large subunit) [Bacillus amyloliquefaciens TA208]
gi|328911299|gb|AEB62895.1| PBSX terminase (large subunit) [Bacillus amyloliquefaciens LL3]
Length = 432
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 30/198 (15%)
Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
+ P H H ++ +E S K ++G + I T+N + W Y
Sbjct: 105 DNPAKLKSIH--HISLIWIEECSEVKYEGFKELIGRLRHPELSLHMICTTNPVGTSNWTY 162
Query: 239 DIFNIPLEDWKR--------------------YQIDTRTVEGIDSGFHEGI--ISRYGLD 276
F + + + + + + + + +Y D
Sbjct: 163 RHFFRDEQKKRFVLDDHTLYEKGTVVKGDTYYHHSTACDNLFLLKSYIKQLDSLRQY--D 220
Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL-IMGCDIAGEGGDKTVVV 335
D+ RI GQF + F +E E I + PL G D E V+
Sbjct: 221 PDLYRIARKGQFGVNGIRVFPQFQVMEHTEVTERIAAIRRPLFRTGMDFGFEESYNAVIR 280
Query: 336 FRRGNIIEHIF---DWSA 350
+ ++ ++
Sbjct: 281 LAVDPDKKELYIFWEYYK 298
>gi|312201565|gb|ADQ44863.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|312201416|gb|ADQ44721.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|312201279|gb|ADQ44587.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
gi|312201518|gb|ADQ44817.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|312201145|gb|ADQ44458.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|312148787|gb|ADQ31437.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|312147565|gb|ADQ30229.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|224022952|ref|YP_002606442.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|223929838|gb|ACN24543.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|224022912|ref|YP_002606399.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|223929322|gb|ACN24038.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|221316912|ref|YP_002533066.1| PBSX family phage terminase large subunit [Borrelia burgdorferi
72a]
gi|221237378|gb|ACM10217.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
72a]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|219722941|ref|YP_002474367.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692617|gb|ACL33836.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|219723152|ref|YP_002474571.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692773|gb|ACL33988.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|224022879|ref|YP_002606358.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|224590757|ref|YP_002640761.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|224593734|ref|YP_002641063.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|226246755|ref|YP_002776089.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
gi|223929807|gb|ACN24513.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|224553954|gb|ACN55352.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|224554038|gb|ACN55434.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|226201931|gb|ACO38514.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|195942876|ref|ZP_03088258.1| hypothetical protein Bbur8_08745 [Borrelia burgdorferi 80a]
gi|312149906|gb|ADQ29970.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|195942593|ref|ZP_03087975.1| hypothetical protein Bbur8_07129 [Borrelia burgdorferi 80a]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|225576150|ref|YP_002725083.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
94a]
gi|225546143|gb|ACN92158.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
94a]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|225575886|ref|YP_002724729.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
gi|225546289|gb|ACN92300.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|221316807|ref|YP_002527718.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
72a]
gi|225576280|ref|YP_002725297.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
gi|221237285|gb|ACM10136.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
72a]
gi|225547220|gb|ACN93206.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|56561122|ref|YP_161529.1| hypothetical protein BGP243 [Borrelia garinii PBi]
gi|226322231|ref|ZP_03797750.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|52696759|gb|AAU86094.1| hypothetical protein BGP243 [Borrelia garinii PBi]
gi|226232381|gb|EEH31141.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|11497214|ref|NP_051333.1| hypothetical protein BB_M42 [Borrelia burgdorferi B31]
gi|223987696|ref|YP_002601254.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|225575916|ref|YP_002724772.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
gi|225576096|ref|YP_002724941.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
gi|6382235|gb|AAF07550.1|AE001578_21 conserved hypothetical protein [Borrelia burgdorferi B31]
gi|223929409|gb|ACN24123.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|225546099|gb|ACN92115.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
gi|225546556|gb|ACN92560.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
Length = 450
Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|167993618|ref|ZP_02574712.1| gp33 TerL [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
str. CVM23701]
gi|205328294|gb|EDZ15058.1| gp33 TerL [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
str. CVM23701]
Length = 539
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 13/165 (7%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS- 307
+ R+ D ++ + +D+ V + L + IP ++++ A+
Sbjct: 249 VFTFHWRSDPRKDDEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSDWVQAAVDA 306
Query: 308 --REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
R I L D+A EG DK R G ++E++ +WS
Sbjct: 307 HIRLGIQPTGKRLGA-MDVADEGRDKNAFSTRHGFLLENVREWSG 350
>gi|225575989|ref|YP_002724899.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
gi|225546587|gb|ACN92590.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
Length = 450
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNISTFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|319950568|ref|ZP_08024477.1| hypothetical protein ES5_13328 [Dietzia cinnamea P4]
gi|319435762|gb|EFV90973.1| hypothetical protein ES5_13328 [Dietzia cinnamea P4]
Length = 536
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 52/172 (30%), Gaps = 6/172 (3%)
Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
+ +A+ S + + + + I G G GKT L + +R G + I
Sbjct: 200 ADIADAL-TREQSVLLRAVDALPRVEIRGGAGSGKTYL--ALEQARRLSRDGQRVALICY 256
Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
S L + L + W + E +L + + +
Sbjct: 257 SHG-LASYLRRVTNGWKRRERPAYVGEFHALGVEWGAPAGPDERIRSAESVRWWEEELPR 315
Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
E D G AV DEA D + ++G + R I+
Sbjct: 316 LMSELADGLPG--GRRFDAVIVDEAQDFADSWWQPVIGALRDRENGRLMIVG 365
>gi|145335142|ref|NP_172040.2| chr31 (chromatin remodeling 31); ATP binding / DNA binding /
helicase/ nucleic acid binding [Arabidopsis thaliana]
gi|332189724|gb|AEE27845.1| chromatin remodeling 31 [Arabidopsis thaliana]
Length = 1410
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 41 KGKPLEHFSQPHRW----QLEFMEAVDVHCHSNVNNSNPTIFKCAISAG-----R--GIG 89
+G + Q E E + + + + F+ + G G G
Sbjct: 809 EGTVWDKIPGVKSQMYPHQQEGFEFIWKNLAGTIMLNELKDFENSDETGGCIMSHAPGTG 868
Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLSMLPHRHWFEMQSLSL 148
KT L + + P + IA + L WA E KW +P + +
Sbjct: 869 KTRLTIIFLQAYLQCFPDCKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDFTGK 925
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
S L++++ S + + YS + + +G
Sbjct: 926 ENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILG 963
>gi|110740804|dbj|BAE98499.1| hypothetical protein [Arabidopsis thaliana]
Length = 1410
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 41 KGKPLEHFSQPHRW----QLEFMEAVDVHCHSNVNNSNPTIFKCAISAG-----R--GIG 89
+G + Q E E + + + + F+ + G G G
Sbjct: 809 EGTVWDKIPGVKSQMYPHQQEGFEFIWKNLAGTIMLNELKDFENSDETGGCIMSHAPGTG 868
Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLSMLPHRHWFEMQSLSL 148
KT L + + P + IA + L WA E KW +P + +
Sbjct: 869 KTRLTIIFLQAYLQCFPDCKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDFTGK 925
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
S L++++ S + + YS + + +G
Sbjct: 926 ENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILG 963
>gi|8778726|gb|AAF79734.1|AC005106_15 T25N20.14 [Arabidopsis thaliana]
Length = 1465
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 41 KGKPLEHFSQPHRW----QLEFMEAVDVHCHSNVNNSNPTIFKCAISAG-----R--GIG 89
+G + Q E E + + + + F+ + G G G
Sbjct: 864 EGTVWDKIPGVKSQMYPHQQEGFEFIWKNLAGTIMLNELKDFENSDETGGCIMSHAPGTG 923
Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLSMLPHRHWFEMQSLSL 148
KT L + + P + IA + L WA E KW +P + +
Sbjct: 924 KTRLTIIFLQAYLQCFPDCKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDFTGK 980
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
S L++++ S + + YS + + +G
Sbjct: 981 ENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILG 1018
>gi|224591489|ref|YP_002640832.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|224554623|gb|ACN56003.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKIDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|221641598|ref|YP_002527783.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|225622087|ref|YP_002725040.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|221237550|gb|ACM10383.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|225546885|gb|ACN92880.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 450
Score = 44.3 bits (103), Expect = 0.029, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKIDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|219872451|ref|YP_002476937.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
gi|219694305|gb|ACL34832.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
Length = 450
Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats.
Identities = 45/308 (14%), Positives = 88/308 (28%), Gaps = 46/308 (14%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ H K S G GKT L +++++ + S
Sbjct: 46 TAKQKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEK 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K + + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTIKQIEK------ICGFLGIDYQKKKSGESFCKIAGLELNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
D+F + ++ +EA+ ++ I
Sbjct: 150 GK-----------NRDSFSKIRGGNSAIIYVNEATVIHKETLLEVIKRL--RKGKAIIIF 196
Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL- 285
+N +F F + +K Y T + F E Y + +L
Sbjct: 197 DTNPEGPTHFFKTDFIENKDVFKTYNFTTYDNPLNSADFIETQKKLY-KHLPAYKARVLY 255
Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNIIEH 344
G++ E F E +++ + IM D A GGD T + E
Sbjct: 256 GEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICVLE-RAFEK 306
Query: 345 IFDWSAKL 352
+ + +
Sbjct: 307 FYAYIYQD 314
>gi|225576365|ref|YP_002725382.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
gi|225546718|gb|ACN92719.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
118a]
Length = 450
Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDGK 306
>gi|260557981|ref|ZP_05830193.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606]
gi|260408491|gb|EEX01797.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606]
Length = 529
Score = 44.3 bits (103), Expect = 0.031, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 284 ILGQFPQQEVN---NFIPHNYIEEAMSREAIDDLYAPLI--------MGCDIAGEGGDKT 332
+ G F + IP ++E A +R + L G D+A GGD T
Sbjct: 289 LYGDFGAGIEDDPWQVIPTEWVEAAQARWKPLEDMRILHRGDFKMDSYGLDVARGGGDNT 348
Query: 333 VVVFRRGNIIEHIFDWSAKLI 353
+ R G ++ K
Sbjct: 349 IGFARYGYWYDNPNVLEGKDS 369
>gi|11497347|ref|NP_051454.1| hypothetical protein BBN43 [Borrelia burgdorferi B31]
gi|6382368|gb|AAF07680.1|AE001581_22 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKIYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYIFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|225621691|ref|YP_002724049.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547649|gb|ACN93626.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 45/293 (15%), Positives = 85/293 (29%), Gaps = 47/293 (16%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ H K S G GKT L +++++ + S
Sbjct: 46 TDKQKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQ 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K S+ + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
D F + ++ +EA+ + + + I
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIK--RLRKGKEIIIF 196
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
T N +F + + +K Y T + F + Y R +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYTFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVL 254
Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
G++ E F E +++ + IM D A GGD T +
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299
>gi|224590701|ref|YP_002640718.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
gi|224554531|gb|ACN55913.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 44.0 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHRQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|218202781|ref|YP_002364699.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
gi|218164309|gb|ACK74373.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
Length = 450
Score = 44.0 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHRQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|118470437|ref|YP_885678.1| hypothetical protein MSMEG_1288 [Mycobacterium smegmatis str. MC2
155]
gi|118171724|gb|ABK72620.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 549
Score = 44.0 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 44/151 (29%), Gaps = 5/151 (3%)
Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
+ + N+ + + + G G GKT L M + G + + S L + L
Sbjct: 209 QAVILNAARLLNRIEVRGGAGSGKTFL--AMEQARRLAQDGQRVALVCYSHG-LASYLER 265
Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
+ W + E +L + + + + E
Sbjct: 266 VTATWPRRQQPAYVGEFHALGVQWGAPEGPDEALRTEQTVQFWEHDLPSQMTELAAQLEP 325
Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
H AV DEA D +LG +
Sbjct: 326 GHRFD--AVVVDEAQDFADAWWDPLLGALHD 354
>gi|291563675|emb|CBL42491.1| phage uncharacterized protein (putative large terminase),
C-terminal domain [butyrate-producing bacterium SS3/4]
Length = 544
Score = 44.0 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 46/274 (16%), Positives = 96/274 (35%), Gaps = 38/274 (13%)
Query: 6 STDQKLEQE--LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
TD++L LH+ ++ A F+++++ W + P + F P E M V
Sbjct: 59 ETDKELRSLFMLHKKVLLAAAPFDFESYLLYV-EWERE--PDKKFYVPR---REVMHPVV 112
Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
+++ + IS G GK+TL + + W++ P + A+S ++
Sbjct: 113 QAMQDLIDDRLDLL---TISMPPGTGKSTLGIFFLSWVMGRFPDSQSLASAHSGMLTRSF 169
Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
+ + + + + + ++ + + T+TCR + +
Sbjct: 170 ---YDGVYQIITDSEYLWADVFPGVKMAATNSKEETIDLHKKHRFSTLTCRAINA----S 222
Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
G + +D SG I ++ ++ W +N D+ +
Sbjct: 223 LTGATRCDKILYADDLCSG--------IEEAMSKERLDKLWSAYTN---------DLKSR 265
Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
E K I TR + ++YG DS
Sbjct: 266 KKEGAKEIHIATRWSVH---DVIGRLENQYGGDS 296
>gi|163849591|ref|YP_001637634.1| diguanylate cyclase [Methylobacterium extorquens PA1]
gi|163661196|gb|ABY28563.1| diguanylate cyclase [Methylobacterium extorquens PA1]
Length = 1428
Score = 44.0 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 71/256 (27%), Gaps = 33/256 (12%)
Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
+ Q T W E+ + + + + A L+ + G +
Sbjct: 669 PDDRQRVTTTWREIFASQAAGSFEFRALCRDGAYRWTLTRAVPLKDASGQVQEWVGTDGD 728
Query: 175 TYSEER-PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
+ + + + +A+ T D I LG T + + +
Sbjct: 729 IHESRQASEAIRLQEERYRLAML-----ATQDAIWDWDLGADTAEWSDGAYRLFG----- 778
Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR-IEILGQFPQQE 292
+ D W + +I E + + I S+ SD R G + +
Sbjct: 779 ---YDDAERADTGAWWKSKIHPDDRERVTTSIKHIIESQEHRWSDEYRFARADGSYAEVT 835
Query: 293 VNNF------------------IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
F I A R + + L L G +A E KT +
Sbjct: 836 DCGFVIRDTEGQALRMVGALRDISEQRRANAALRASEERLRLALQAGRMVAWERDLKTGL 895
Query: 335 VFRRGNIIEHIFDWSA 350
R N ++ + S
Sbjct: 896 ATRSDNALQLLGIGSG 911
>gi|219723105|ref|YP_002474527.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
gi|219694031|gb|ACL34563.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
Length = 450
Score = 44.0 bits (102), Expect = 0.038, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L + +N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRLRCAQETIIF--DTNPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ + Y+ T + F + Y D + + LG++ + F N
Sbjct: 212 IDNVATFNTYKFTTYDNVLLSKEFIKTQEKLY-KDIPAYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMDRVDDK 306
>gi|332759085|gb|EGJ89395.1| gp33 TerL [Shigella flexneri 4343-70]
Length = 519
Score = 44.0 bits (102), Expect = 0.041, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS-- 307
+ R D ++ + +D+ V + L + IP +++ A+
Sbjct: 229 FTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAH 286
Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
+ + D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 287 IKLGIQPTGKRLGAMDVADEGRDKNSFSTRHGFLLENVREWSGVGSDIYQSVEK 340
>gi|313760829|gb|ADR79391.1| terminase [APSE phage Eptesicus fuscus/P5/IT/USA/2009]
Length = 394
Score = 44.0 bits (102), Expect = 0.042, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 24/169 (14%)
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
+ +EA + +++ + W N +G Y F P +K ID
Sbjct: 44 WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYRRFVKP---YKAI-ID- 96
Query: 256 RTVEGIDSGFHEGIISRYGL----DSDVARIEILGQFPQQE-----VNNFIPHNYIEEAM 306
G++E G D+ E+ + E + I ++E A
Sbjct: 97 ------KQGYYEDDEVYVGKVSYLDNPWLPAELKNDAQKGECDANYEDALIQPEWVEAAT 150
Query: 307 S--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
+ ++ D A G D+ + R G +IE WS +
Sbjct: 151 DAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDV 199
>gi|333006277|gb|EGK25786.1| gp33 TerL [Shigella flexneri K-218]
Length = 540
Score = 44.0 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS-- 307
+ R D ++ + +D+ V + L + IP +++ A+
Sbjct: 250 FTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAH 307
Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
+ + D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 308 IKLGIQPTGKRLGAMDVADEGRDKNSFSTRHGFLLENVREWSGVGSDIYQSVEK 361
>gi|203288918|ref|YP_002223912.1| bsr protein [Borrelia duttonii Ly]
gi|201084425|gb|ACH94009.1| bsr protein [Borrelia duttonii Ly]
Length = 399
Score = 44.0 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 85/278 (30%), Gaps = 45/278 (16%)
Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST--------RPGMSIICIANSETQL 120
NN N I I++ GKT L + T R G + + NS+ L
Sbjct: 6 EKNNQNKVILSGGIAS----GKTFLA---CYLFLKTLLKNRHLYRKGTNNFILGNSQKAL 58
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
E++ + ++ + + + Y E+ + + Y ++
Sbjct: 59 ------EINVIEQFEDLANMLKIPFVPKYSNRSYFEIDSLRVNL-----------YGGDK 101
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
F ++ ++ +EA+ K L + P T N +F
Sbjct: 102 IRDFKRFRGSNSAVIYVNEATTLHKETLKEALKRL-RIKPEFIVFDT-NPDHPEHYFKTD 159
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPH 299
+ + Y T E I F + Y D + + LG++ F
Sbjct: 160 YIDKNTIYSTYNFTTYDNEEISKEFIKTQEELY-KDFPTYKASVLLGEWVANNDAIFRNI 218
Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIAG-EGGDKTVVVF 336
N IE D + I D A GGD T +
Sbjct: 219 NIIE--------DYDFKSPIAYLDPAYSSGGDNTSLCV 248
>gi|328882738|emb|CCA55977.1| DNA or RNA helicases of superfamily II [Streptomyces venezuelae
ATCC 10712]
Length = 597
Score = 44.0 bits (102), Expect = 0.043, Method: Composition-based stats.
Identities = 41/202 (20%), Positives = 57/202 (28%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG GK WQ ME P F A++ G GKTT
Sbjct: 20 PWGTAGKL-------RAWQQGAME--------KYIQEQPRDF-LAVATP-GAGKTTFALT 62
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ WL+ I +A +E + K + R ++
Sbjct: 63 LASWLLHHHVVQQITVVAPTEH---------LKKQWAAAAARIGIKLD------------ 101
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
+ S G SK Y TY+ H V DE +G ++
Sbjct: 102 -PDYSAGPLSKEYDGVAITYAGVGVRPM--LHRNRSEQRKTLVILDEIHHAGDSKSWGEA 158
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
L F R +T R
Sbjct: 159 CLEAF--EPATRRLALTGTPFR 178
>gi|254776419|ref|ZP_05217935.1| phage terminase [Mycobacterium avium subsp. avium ATCC 25291]
Length = 491
Score = 43.6 bits (101), Expect = 0.044, Method: Composition-based stats.
Identities = 46/329 (13%), Positives = 94/329 (28%), Gaps = 62/329 (18%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSI 110
WQ+ + + +P AI RG+GKT + A + L+ + P G I
Sbjct: 51 RPWQMGMLR--------PFLDPDPRPLVGAIMGPRGLGKTGIFAALGLYELFCGPDGNEI 102
Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
+A E L P E+ A + + + K T
Sbjct: 103 PIVAVDERMAGRLL----------KPAAQMVELND----ELAARAVVYRDRIEVPGKRST 148
Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-------GFF-------- 215
+T +R + DE ++L G
Sbjct: 149 LTALPAEAKRIEGL-----GTWTLALADELGEIDPDTWSTLLLGAGKLDGAMALGIGTPP 203
Query: 216 ---TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT-RTVEGIDSGFHEGIIS 271
T + + +N FY+ + ++ + + +E + + +
Sbjct: 204 NRETSVLTDLREACRANPDDRTMAFYEF---SADGFEHHPVSCVHCLELANPQLDDLLSR 260
Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNY---IEEAMSREAIDDLYAPLIMGCDI--AG 326
+ + + G++ ++ + + N ++ P+ G D+ A
Sbjct: 261 D--RATALLKQTTEGEYRRKRLCQVVTTNESPFVDA--DTWDGLKAPHPVPDGADVVIAL 316
Query: 327 EG---GDKTVVVFRRGNIIEHIFDWSAKL 352
+G D T +V + H A
Sbjct: 317 DGSLKDDSTALVVGTVGKVPHFDRLDAWE 345
>gi|247553003|gb|ACS94840.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 43.6 bits (101), Expect = 0.045, Method: Composition-based stats.
Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ NN + IF I++ GKT L +++++ + S
Sbjct: 46 TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K S+ + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
D F + ++ +EA+ + + + I
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIK--RLRKGKEIIIF 196
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
T N +F + + +K Y T + F + Y R +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVL 254
Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
G++ E F E +++ + IM D A GGD T +
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299
>gi|219807285|ref|YP_002477581.1| phage terminase, pbsx family protein [Borrelia burgdorferi 156a]
gi|224797061|ref|YP_002642778.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|225571759|ref|YP_002724342.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|219692550|gb|ACL33771.1| phage terminase, pbsx family protein [Borrelia burgdorferi 156a]
gi|223929616|gb|ACN24327.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|225547179|gb|ACN93166.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 450
Score = 43.6 bits (101), Expect = 0.045, Method: Composition-based stats.
Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ NN + IF I++ GKT L +++++ + S
Sbjct: 46 TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K S+ + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
D F + ++ +EA+ + + + I
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIK--RLRKGKEIIIF 196
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
T N +F + + +K Y T + F + Y R +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVL 254
Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
G++ E F E +++ + IM D A GGD T +
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299
>gi|9631142|ref|NP_047924.1| gp33 [Streptomyces phage phiC31]
gi|3947452|emb|CAA07103.1| gp33 [Streptomyces phage phiC31]
Length = 519
Score = 43.6 bits (101), Expect = 0.045, Method: Composition-based stats.
Identities = 44/315 (13%), Positives = 91/315 (28%), Gaps = 31/315 (9%)
Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MS 109
WQ E + V + R GK+T+ A +ML+ + G
Sbjct: 51 PWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 110
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
II AN Q + + +K + + Y + + + D+
Sbjct: 111 IIAAANDRNQARMVF--DSAKQMVNASPKLAAVCDVQRDVIR--YKDNTYRVVSADAGRQ 166
Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
F + A + I + + +
Sbjct: 167 QGLNPAAVSLDEYAFSKHSDLFDALTLGSAARN--QPMFLIISTAGPDPDGPFAALCEQG 224
Query: 230 TRRLNGW------FYDIF---------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
R +G FY + ++ + W+ + + ++ + R
Sbjct: 225 ERVNSGEADDPTLFYRSWGPKLGETVDHLDPDVWRACN-PSYDI--LNPDDFKAAAQRST 281
Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
S RI L QF + ++PH + + + + +++G D + +G +V
Sbjct: 282 EAS--FRIYRLSQFVRGAS-TWLPHGLWDSLAADDDPLEPGDEVVLGFDGSWKGDSTALV 338
Query: 335 VFR-RGNIIEHIFDW 348
R R + + W
Sbjct: 339 ACRIRDLKVFVLGHW 353
>gi|323940932|gb|EGB37119.1| hypothetical protein ERDG_02336 [Escherichia coli E482]
Length = 443
Score = 43.6 bits (101), Expect = 0.048, Method: Composition-based stats.
Identities = 62/298 (20%), Positives = 94/298 (31%), Gaps = 58/298 (19%)
Query: 81 AISAGRGIGKTT-LNAWMMLWLIST--RPGMSI-------ICIAN--SETQLKNTLWAEV 128
A+ GR GKT L++ + + S RPGM I I A ++ + L E+
Sbjct: 27 AVRCGRRWGKTFMLSSAAVTYATSQFRRPGMDIELGGRVGIFTAEYRQYQEIYDKLE-EI 85
Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
+LP + F Q L LL+ ID + + G
Sbjct: 86 -----LLPLKKSFSRQEKRL--------LLKNGGKIDFW--------VTNDNKLAGRGRE 124
Query: 189 NTHGMAVFNDEASGTPDI-----INK-SILGFFTELNPNRFWIMTSNTRRLNGWFYD-IF 241
+ DEA+ T I SI + T + +FY
Sbjct: 125 YE---IILIDEAAFTKSPEMLKEIWPKSIKPTLLTTKGRAYVFSTPDGVDEENFFYAICH 181
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP-HN 300
N L + + T + + E R D V R E L +F +
Sbjct: 182 NKDLG-FHEHHAPTSSNPFVPPEELEK--ERQNNDPRVFRQEFLAEFVDWSAASLFDVRK 238
Query: 301 YIEEAMSREA--IDDLYAPLIMGCDIAGEGG---DKTVVVF-----RRGNIIEHIFDW 348
+ E + ++ + D A +GG D T VV+ R G I DW
Sbjct: 239 WFEGENQDQPVDYPEMCQAVFAVMDTAVKGGTDHDGTAVVYYAVDTRPGIQRLTILDW 296
>gi|330791351|ref|XP_003283757.1| hypothetical protein DICPUDRAFT_147464 [Dictyostelium purpureum]
gi|325086380|gb|EGC39771.1| hypothetical protein DICPUDRAFT_147464 [Dictyostelium purpureum]
Length = 1580
Score = 43.6 bits (101), Expect = 0.049, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 19/174 (10%)
Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-----PGMSIICIANSETQLK 121
N+ NS + G GKT A ++L + + P I + + +
Sbjct: 1079 QENIFNSIIKRRLQLVRGPPGTGKTHFLALIVLIFMESYKRLGKPF-RIAITSFTHNAID 1137
Query: 122 NTLWA------EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
N L E S + + F+ Q+ L + +H+ + +
Sbjct: 1138 NLLIRIASLKKEYSTSVGQDINFPLFKKQTKLSEDLKLNKIQLFDKKEFEREHFCVGATS 1197
Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
+S D + + DEAS I +I + R + N
Sbjct: 1198 WSLSNMD------YENFDLLIIDEASQLSSYI-GAIPFSRLNKDTGRVIVCGDN 1244
>gi|195942125|ref|ZP_03087507.1| hypothetical protein Bbur8_04585 [Borrelia burgdorferi 80a]
Length = 450
Score = 43.6 bits (101), Expect = 0.049, Method: Composition-based stats.
Identities = 49/304 (16%), Positives = 96/304 (31%), Gaps = 42/304 (13%)
Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR- 105
+F + QL ++ +V NN I I++ GKT L ++ L +
Sbjct: 36 NFDKFEEKQL-TLKQKNVIKSIKKNNEKKIILSGGIAS----GKTYLACYLFLKSLIANK 90
Query: 106 ----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
+ I NS+ ++ + + K + ++ + H + Y +
Sbjct: 91 NLYSSDTNNFIIGNSQRSVEVNVLGQFEKLCKL------LKIPYIPRHTNNSYILIDSLR 144
Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
+ + + F G ++ +F +EA+ + +L
Sbjct: 145 INLYGGDKASDF--------ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQE 192
Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
T N +F + + +K Y T + GF E Y D +
Sbjct: 193 TIIFDT-NPDHPEHYFKTDYIDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYK 250
Query: 282 IEI-LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--R 337
+ LG++ + F N + D ++ I D A GGD T + R
Sbjct: 251 ARVLLGEWIASTDSIFTQINITD--------DYVFTSSIAYLDPAFSVGGDNTALCVMER 302
Query: 338 RGNI 341
+
Sbjct: 303 VDDK 306
>gi|308071887|emb|CBW54808.1| putative DNA maturase B [Pantoea phage LIMElight]
Length = 614
Score = 43.6 bits (101), Expect = 0.050, Method: Composition-based stats.
Identities = 33/230 (14%), Positives = 71/230 (30%), Gaps = 45/230 (19%)
Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
PR I +D++ E + + E F++F G F Q + +
Sbjct: 25 PRTIPSDKRTELAMMLAITFKE----FRDFAY-------VGMRFLGFELTDM-QADIADY 72
Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ-- 119
+ + ++A RG K+TL A +W + ++ ++ E Q
Sbjct: 73 MQYGPRKKM-----------VAAQRGEAKSTLAALYSVWRLIQDQRCRVLILSGGEQQAS 121
Query: 120 -LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
+ + + W P W + S + + A + + K ++ C +
Sbjct: 122 EVATLVIRLIETW----PLLCWLKADSTRGDRTSYTAYDVHCDLKPLDKSPSVACIGVTA 177
Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
+ G PD I ++ T+ + ++
Sbjct: 178 ----SLQGKRADLL----------IPDDI-ETTKNGMTQTEREKLLTVSK 212
>gi|219723219|ref|YP_002474654.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692798|gb|ACL34012.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|312148753|gb|ADQ31404.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 43.6 bits (101), Expect = 0.053, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
D ++ I D A GGD T + R +
Sbjct: 271 IT--------ADYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|224984406|ref|YP_002641809.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
gi|224497005|gb|ACN52640.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
Length = 450
Score = 43.6 bits (101), Expect = 0.054, Method: Composition-based stats.
Identities = 44/297 (14%), Positives = 83/297 (27%), Gaps = 55/297 (18%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-----TRP 106
Q E + ++ H K S G GKT L +++++ +
Sbjct: 46 TAKQKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLIKKLIENKSLYER 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K + + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTIKQIEK------ICGFLGIDYQKKKSGESFCKIAGLELNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
D F + ++ +EA+ ++ I
Sbjct: 150 GR-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIKRL--RKGKSIIIF 196
Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL- 285
+N +F + + +K Y T + F E Y + +L
Sbjct: 197 DTNPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLY-KHFPAYKARVLY 255
Query: 286 GQFPQQEVNNFIPHNYI--EEAMSREAIDD---LYAPLIMGCDIAGE-GGDKTVVVF 336
G+ +I E A+ E I + + IM D A GGD T +
Sbjct: 256 GE-------------WILNESALFNEMIFNQDYEFKSPIMYIDPAFSVGGDNTAICV 299
>gi|82776052|ref|YP_402399.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
gi|81240200|gb|ABB60910.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
Length = 272
Score = 43.2 bits (100), Expect = 0.063, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 7/144 (4%)
Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
++ +EA + K + + W + N + + + F P E +
Sbjct: 131 VLWLEEAHALTEYQWKILEPTIRKEGSEC-WFIF-NPGLVTDFVWRNFVVDPPEGTLIRK 188
Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMS--RE 309
I+ + + I + D D + G P+ + + I ++IE A+ +
Sbjct: 189 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAIIKLSWIEAAVDAHKT 247
Query: 310 AIDDLYAPLIMGCDIAGEGGDKTV 333
+ +G D+A G DK
Sbjct: 248 LNFEPSGRKRIGFDVADSGTDKCA 271
>gi|120402158|ref|YP_951987.1| hypothetical protein Mvan_1146 [Mycobacterium vanbaalenii PYR-1]
gi|119954976|gb|ABM11981.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length = 551
Score = 43.2 bits (100), Expect = 0.066, Method: Composition-based stats.
Identities = 26/171 (15%), Positives = 44/171 (25%), Gaps = 5/171 (2%)
Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
E + S + ++ + + I G G GKT L M R G + + S
Sbjct: 199 EDAADILTEHQSVILDAIRLLNRVEIRGGAGSGKTFL--AMEQARRLARDGQRVALVCYS 256
Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
L + L + W + E L + +
Sbjct: 257 HG-LASYLERITAAWNRRQQPAYVGEFHDLGKRWGAPAGPDESLRTEQTVQFWEHDLPAQ 315
Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
E A+ DEA D +L + ++ T
Sbjct: 316 MTEL--AMQLDDGQRFDAIVVDEAQDFADAWWDPLLAALKDDETGGLYVFT 364
>gi|154489097|ref|ZP_02029946.1| hypothetical protein BIFADO_02409 [Bifidobacterium adolescentis
L2-32]
gi|154083234|gb|EDN82279.1| hypothetical protein BIFADO_02409 [Bifidobacterium adolescentis
L2-32]
Length = 1055
Score = 43.2 bits (100), Expect = 0.068, Method: Composition-based stats.
Identities = 41/235 (17%), Positives = 68/235 (28%), Gaps = 32/235 (13%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
+ I + + L + FK + P KP+E SQ Q M+
Sbjct: 194 LSEEIESQISESKPLTD-AWLKLYEEDFKKYA----PQRPNRKPIEKTSQSQTIQPNAMQ 248
Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
+ + I + G GKT L+A+ + Q+
Sbjct: 249 V--EALMNLAQLRKQGESRAIIVSATGTGKTYLSAFDV-------------------RQV 287
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
K +++ + + Q + P S D K+ T +T S R
Sbjct: 288 KPNRMLYIAQ-QEQILKKAEESFQKVLGCPKSELGLFSGGSKESDRKYVFATVQTMS--R 344
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
P+T + DE +S PN MT+ R +G
Sbjct: 345 PETLAQFDADEFDYILVDE---VHHAAAESYKRVIDHFQPNFMLGMTATPERTDG 396
>gi|323137496|ref|ZP_08072573.1| hypothetical protein Met49242DRAFT_1961 [Methylocystis sp. ATCC
49242]
gi|322397122|gb|EFX99646.1| hypothetical protein Met49242DRAFT_1961 [Methylocystis sp. ATCC
49242]
Length = 323
Score = 43.2 bits (100), Expect = 0.069, Method: Composition-based stats.
Identities = 47/260 (18%), Positives = 88/260 (33%), Gaps = 48/260 (18%)
Query: 85 GRGIGKTTLNAWMMLWLISTRPG---------MSIICIANSETQLKNTL------WAEVS 129
GR GK ++ + ++ W + G +C+A + Q + L +AE+
Sbjct: 67 GRRAGKDSIASAIVTWSAAMFDGADRLRPGERALCLCLACDKDQARIVLSYVRAYFAELE 126
Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
+M+ L S + + + TI C E
Sbjct: 127 PLRAMVTRE-----TKDGLELSNGVDIYVGVNDFRAVRGRTILCAVLDE----------- 170
Query: 190 THGMAVFNDEASGTPDI-INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN----IP 244
+A + DE S +PD+ + +++ L P I S+ R G +
Sbjct: 171 ---IAYWRDENSASPDLELYRALKPGMATL-PEAMLIGISSPYRRAGLLHAKHRQAYGRD 226
Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
+ +D + ++ D AR E L +F + +++ F+ + IE
Sbjct: 227 GDTLVIRAPSAVMNPTLDQAEIDQAMA---EDPAAARAEWLAEF-RDDISGFLGLDLIEA 282
Query: 305 AMSREAIDDL----YAPLIM 320
A+ + YAP IM
Sbjct: 283 AVDPTIVTRPPRGCYAPWIM 302
>gi|168820654|ref|ZP_02832654.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|205342611|gb|EDZ29375.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
Length = 539
Score = 43.2 bits (100), Expect = 0.071, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
F DEA+ + I ++ R + + N +N F
Sbjct: 195 DRTTLYFVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMNNPFAQ--KRHSGKIS 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMS- 307
+ R+ D ++ + +D+ + E+ + IP +++ A+
Sbjct: 249 VFTFHWRSDPRKDDEWYRKECEK--IDNPIIVAQELDLNYQASAEGILIPSEWVQAAVDA 306
Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
+ + D+A EG DK R G ++ + +WS K
Sbjct: 307 HIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSDVQEWSGK 351
>gi|224022826|ref|YP_002606317.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|223929278|gb|ACN23995.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
Length = 450
Score = 43.2 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
D ++ I D A GGD T + R +
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|224020463|ref|YP_002601168.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|223929158|gb|ACN23879.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
Length = 450
Score = 43.2 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
D ++ I D A GGD T + R +
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|219869985|ref|YP_002474251.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692877|gb|ACL34089.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
Length = 450
Score = 43.2 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
D ++ I D A GGD T + R +
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|195942413|ref|ZP_03087795.1| hypothetical protein Bbur8_06149 [Borrelia burgdorferi 80a]
gi|312201120|gb|ADQ44434.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
gi|312201339|gb|ADQ44646.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 43.2 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
D ++ I D A GGD T + R +
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|219499179|ref|YP_002455350.1| putative phage terminase, pbsx family protein [Borrelia burgdorferi
ZS7]
gi|218164189|gb|ACK74256.1| putative phage terminase, pbsx family protein [Borrelia burgdorferi
ZS7]
Length = 450
Score = 43.2 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ NN + IF I++ GKT L +++++ + S
Sbjct: 46 TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K S+ + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
D F + ++ +EA+ + + + I
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIK--RLRKGKEIIIF 196
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
T N +F + + +K Y T + F + Y R +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQAQEKLY-RRFPAYRARVL 254
Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
G++ E F E +++ + IM D A GGD T +
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299
>gi|11497404|ref|NP_051512.1| hypothetical protein BB_Q50 [Borrelia burgdorferi B31]
gi|6382425|gb|AAF07735.1|AE001584_32 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 43.2 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
D ++ I D A GGD T + R +
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|11497152|ref|NP_051291.1| hypothetical protein BB_R45 [Borrelia burgdorferi B31]
gi|6382173|gb|AAF07489.1|AE001577_3 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 43.2 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
D ++ I D A GGD T + R +
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|11497247|ref|NP_051377.1| hypothetical protein BB_O44 [Borrelia burgdorferi B31]
gi|6382268|gb|AAF07582.1|AE001579_11 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 43.2 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
D ++ I D A GGD T + R +
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|323699495|ref|ZP_08111407.1| protein of unknown function DUF264 [Desulfovibrio sp. ND132]
gi|323459427|gb|EGB15292.1| protein of unknown function DUF264 [Desulfovibrio desulfuricans
ND132]
Length = 428
Score = 43.2 bits (100), Expect = 0.074, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 42/144 (29%), Gaps = 22/144 (15%)
Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
R IA Q K +W E+ ++ L E
Sbjct: 50 RDDWRGAYIAPLYRQAKTVVWDELKRYC------------GFGLDGCTVKFNETELRADF 97
Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRF 223
D+ R + PD+ G + V DE + P + + I ++ +
Sbjct: 98 DNGSRI---RLFGANNPDSLRGMYLDG---VVFDEVAQMPLRVWTEVIRPALSD---RKG 148
Query: 224 WIMTSNTRRLNGWFYDIFNIPLED 247
W M T R Y+I+ D
Sbjct: 149 WAMFIGTPRGKNALYEIWEKGKTD 172
>gi|247553170|gb|ACS94899.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 42.8 bits (99), Expect = 0.075, Method: Composition-based stats.
Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ NN + IF I++ GKT L +++++ + S
Sbjct: 46 TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K S+ + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
D F + ++ +EA+ + + + I
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIK--RLRKGKEIIIF 196
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
T N +F + + +K Y T + F + Y R +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVL 254
Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
G++ E F E +++ + IM D A GGD T +
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299
>gi|11496928|ref|NP_045704.1| hypothetical protein BBA31 [Borrelia burgdorferi B31]
gi|195942693|ref|ZP_03088075.1| hypothetical protein Bbur8_07694 [Borrelia burgdorferi 80a]
gi|224796822|ref|YP_002642504.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|224796893|ref|YP_002642572.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|225573840|ref|YP_002724449.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
94a]
gi|226234883|ref|YP_002775758.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|2690260|gb|AAC66261.1| conserved hypothetical protein [Borrelia burgdorferi B31]
gi|221237191|gb|ACM10059.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|224554443|gb|ACN55827.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|225546432|gb|ACN92439.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
94a]
gi|226202357|gb|ACO38016.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|247552767|gb|ACS94776.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 450
Score = 42.8 bits (99), Expect = 0.075, Method: Composition-based stats.
Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ NN + IF I++ GKT L +++++ + S
Sbjct: 46 TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K S+ + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
D F + ++ +EA+ + + + I
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIK--RLRKGKEIIIF 196
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
T N +F + + +K Y T + F + Y R +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVL 254
Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
G++ E F E +++ + IM D A GGD T +
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299
>gi|56560912|ref|YP_161331.1| hypothetical protein BGP046 [Borrelia garinii PBi]
gi|52696553|gb|AAU85896.1| hypothetical protein BGP046 [Borrelia garinii PBi]
Length = 450
Score = 42.8 bits (99), Expect = 0.077, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSTLIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y + + + LG++ + F N
Sbjct: 212 IDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KEIPTYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMDRVDDK 306
>gi|295836865|ref|ZP_06823798.1| DNA or RNA helicase, superfamily II [Streptomyces sp. SPB74]
gi|197699526|gb|EDY46459.1| DNA or RNA helicase, superfamily II [Streptomyces sp. SPB74]
Length = 596
Score = 42.8 bits (99), Expect = 0.078, Method: Composition-based stats.
Identities = 41/202 (20%), Positives = 57/202 (28%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG GK WQ ME P F A++ G GKTT
Sbjct: 20 PWGTAGKL-------RAWQQGAME--------RYVQEQPRDF-LAVATP-GAGKTTFALT 62
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ WL+ I +A +E + K + R ++
Sbjct: 63 LASWLLHHHVVQQITVVAPTEH---------LKKQWAEAAARIGIKLD------------ 101
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
+ S G SK Y TY+ H V DE +G ++
Sbjct: 102 -PDYSAGPVSKEYVGVAVTYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 158
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
L F R +T R
Sbjct: 159 CLEAF--EPATRRLALTGTPFR 178
>gi|224591529|ref|YP_002640858.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|224554111|gb|ACN55505.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 42.8 bits (99), Expect = 0.083, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ VF +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALVFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
D ++ I D A GGD T + R +
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|318064508|gb|ADV36483.1| phage terminase large subunit [Edwardsiella phage eiDWF]
gi|318064606|gb|ADV36532.1| phage terminase large subunit [Edwardsiella phage eiMSLS]
Length = 460
Score = 42.8 bits (99), Expect = 0.084, Method: Composition-based stats.
Identities = 45/253 (17%), Positives = 88/253 (34%), Gaps = 36/253 (14%)
Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
P++ + W+++ + H +N++ I +G G GKT A + L
Sbjct: 26 APVKKERKSRTWRIKTLP----HQRGLINDTTTKILGLC--SGFGGGKTWSAARKAVQLA 79
Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
PG I + L ++ E+ K L+ + F Q H
Sbjct: 80 ILNPGCDGIITEPTIPLLVKIMYPELEKALNEAGIKWKFNKQDKIYHC------------ 127
Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKS---ILGFFTEL 218
I + I C S E +G + DE + PDI ++ +LG
Sbjct: 128 RIAGQMTRIICD--SMENYTRLIGVNAA---WCVCDEFDTTKPDIAMEAYRKLLGRLRTG 182
Query: 219 NPNRFWIMTSNTRRLNGW--FYDIF-NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
N + I++ G+ Y IF + + + + T + + + + ++Y
Sbjct: 183 NVRQMVIVS----TPEGFRAMYQIFISEADDQKRLIKARTTDNHYLPQDYIDTLRAQYPP 238
Query: 276 DSDVARIEILGQF 288
+ + + G+F
Sbjct: 239 E--LIEAYLNGEF 249
>gi|318064394|gb|ADV36428.1| phage terminase large subunit [Edwardsiella phage eiAU]
Length = 460
Score = 42.8 bits (99), Expect = 0.084, Method: Composition-based stats.
Identities = 45/253 (17%), Positives = 88/253 (34%), Gaps = 36/253 (14%)
Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
P++ + W+++ + H +N++ I +G G GKT A + L
Sbjct: 26 APVKKERKSRTWRIKTLP----HQRGLINDTTTKILGLC--SGFGGGKTWSAARKAVQLA 79
Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
PG I + L ++ E+ K L+ + F Q H
Sbjct: 80 ILNPGCDGIITEPTIPLLVKIMYPELEKALNEAGIKWKFNKQDKIYHC------------ 127
Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKS---ILGFFTEL 218
I + I C S E +G + DE + PDI ++ +LG
Sbjct: 128 RIAGQMTRIICD--SMENYTRLIGVNAA---WCVCDEFDTTKPDIAMEAYRKLLGRLRTG 182
Query: 219 NPNRFWIMTSNTRRLNGW--FYDIF-NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
N + I++ G+ Y IF + + + + T + + + + ++Y
Sbjct: 183 NVRQMVIVS----TPEGFRAMYQIFISEADDQKRLIKARTTDNHYLPQDYIDTLRAQYPP 238
Query: 276 DSDVARIEILGQF 288
+ + + G+F
Sbjct: 239 E--LIEAYLNGEF 249
>gi|168260952|ref|ZP_02682925.1| phage terminase, large subunit, pbsx family [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|205349913|gb|EDZ36544.1| phage terminase, large subunit, pbsx family [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
Length = 471
Score = 42.8 bits (99), Expect = 0.089, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTI-RKTFSEIWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|317152051|ref|YP_004120099.1| hypothetical protein Daes_0328 [Desulfovibrio aespoeensis Aspo-2]
gi|316942302|gb|ADU61353.1| protein of unknown function DUF264 [Desulfovibrio aespoeensis
Aspo-2]
Length = 428
Score = 42.8 bits (99), Expect = 0.090, Method: Composition-based stats.
Identities = 38/260 (14%), Positives = 64/260 (24%), Gaps = 43/260 (16%)
Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
++R IA Q K +W E+ ++ + + L
Sbjct: 48 TSRTDWRGAYIAPLYKQAKTVVWDELKRYCGLGLDGCTVKFNETEL-------------- 93
Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPN 221
R + E PD+ G + DE + P + + I ++
Sbjct: 94 -RADFDNGARIRLFGAENPDSLRGMYLDGA---VFDEVAQMPHRVWTEVIRPALSDRMGW 149
Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLE--DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
+I R N Y ++ DW I+ G +
Sbjct: 150 AMFI--GTPRGKNA-LYRLWQDARRDPDWFAAMYRASQTGIIEPGELAAAAREMSPE--E 204
Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP-------LIMGCDIAGEGGDKT 332
E F + E + P +G D T
Sbjct: 205 YEQEFECSFTAAIRGAYFSALIGEADKGGRITKVPHDPSLPVHTAWDLGM------SDST 258
Query: 333 VVVF---RRGNIIEHIFDWS 349
+ F R GN I D+
Sbjct: 259 AIWFVQARPGNA-FAIVDYY 277
>gi|317153313|ref|YP_004121361.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2]
gi|316943564|gb|ADU62615.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2]
Length = 507
Score = 42.8 bits (99), Expect = 0.097, Method: Composition-based stats.
Identities = 32/205 (15%), Positives = 62/205 (30%), Gaps = 15/205 (7%)
Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
GR +GK+ + + L T G + A + L + + E+ L P
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDSIIE-EIEYQLDTNPDLMNSIAV 113
Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
+ P S Y Y D+F H V+ DE +
Sbjct: 114 TKYGKPKIHRKPYFRLEFTNGSVLYFRPAGAYG----DSFRSLHVGR---VWVDEGAWLT 166
Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRL-NGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
+ K++ + S L + +Y + + + ++ +
Sbjct: 167 ERAWKALRQCLKTGG---ILRIYSTPNGLRDTTYYRL--TSSDQFHVFRWPSWLNPLWTE 221
Query: 264 GFHEGIISRYG-LDSDVARIEILGQ 287
++ YG DS + E+ G+
Sbjct: 222 DRESELLEFYGGRDSSGWQHEVAGE 246
>gi|238765385|ref|ZP_04626308.1| Gp33 TerL [Yersinia kristensenii ATCC 33638]
gi|238696377|gb|EEP89171.1| Gp33 TerL [Yersinia kristensenii ATCC 33638]
Length = 501
Score = 42.4 bits (98), Expect = 0.098, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMSRE 309
+ R+ D ++ + +D+ V + L + IP +++ A+
Sbjct: 213 FTFHWRSDPRKDDEWYRKECEK--IDNPVVVAQELDLNYQASAEGILIPSEWVQAAIDAH 270
Query: 310 AIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
D + D+A EG DK R G +++ + +WS +
Sbjct: 271 IHLDIQPSGARLGAMDVADEGRDKNGFAIRYGFLLQDVKEWSGE 314
>gi|51557524|ref|YP_068358.1| DNA packaging terminase subunit 1 [Suid herpesvirus 1]
gi|40253983|tpg|DAA02178.1| TPA_exp: UL15 protein [Suid herpesvirus 1]
Length = 735
Score = 42.4 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 22/152 (14%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW---AEVSKWLSMLPHRHWFEMQS 145
GKT ++ ++T G+ + A+ + A + +W H
Sbjct: 277 GKTWFLVPLIALALATFRGIRVGYTAHIRKATEPVFEEIHARLRRWCRDARVDHVKGENI 336
Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
P G + ++ S + G +F DEA+
Sbjct: 337 TVTFPDGARSTIVF----------------ASSHNTNGIRGQDFN---LLFVDEANFIRP 377
Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
++ILGF + + ++ ++NT + + F
Sbjct: 378 DAVQTILGFMNQASCKIIFVSSTNTGKASTSF 409
>gi|28395422|gb|AAO38880.1| UL15 [Suid herpesvirus 1]
Length = 753
Score = 42.4 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 22/152 (14%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW---AEVSKWLSMLPHRHWFEMQS 145
GKT ++ ++T G+ + A+ + A + +W H
Sbjct: 293 GKTWFLVPLIALALATFRGIRVGYTAHIRKATEPVFEEIHARLRRWCRDARVDHVKGENI 352
Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
P G + ++ S + G +F DEA+
Sbjct: 353 TVTFPDGARSTIVF----------------ASSHNTNGIRGQDFN---LLFVDEANFIRP 393
Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
++ILGF + + ++ ++NT + + F
Sbjct: 394 DAVQTILGFMNQASCKIIFVSSTNTGKASTSF 425
>gi|238581544|ref|XP_002389644.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553]
gi|215452133|gb|EEB90574.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553]
Length = 633
Score = 42.4 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 18/159 (11%)
Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANS-----------ETQLKNTLWAEVSKWLSML 135
G GKT +L L+S P I+ A S + ++ L+ +
Sbjct: 480 GTGKTVTAVEAILQLLSANPNARILACAPSNSAADLIAMRLRSLGESGLFRAYAPSRDRE 539
Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
H + + +G ++ L M K + T +G H +
Sbjct: 540 QVPHEL-LPFTYQNATGHFSVPLLSRM----KRFRAVVTTCVSANIIAGIGIPRGHYTHI 594
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
F DEA + + ++ T + N +++ + ++L
Sbjct: 595 FVDEAGQATEP--EVMIAIKTMADMNTNVVLSGDPKQLG 631
>gi|323139470|ref|ZP_08074518.1| hypothetical protein Met49242DRAFT_3906 [Methylocystis sp. ATCC
49242]
gi|322395272|gb|EFX97825.1| hypothetical protein Met49242DRAFT_3906 [Methylocystis sp. ATCC
49242]
Length = 439
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 47/259 (18%), Positives = 85/259 (32%), Gaps = 37/259 (14%)
Query: 82 ISAGRGIGKTTLNA-WMMLWLI-----STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
I GRG GKT A W+ + TRP I I + ++ + VS L++
Sbjct: 54 ILGGRGAGKTRAGAEWVKGLALGRPHFCTRPVSRIALIGETAADVREVMIEGVSGLLAIH 113
Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNTHGM 193
R +S + + +S E P++ G H
Sbjct: 114 GKRDRPRWESSR---------------RRLVWDSGVVAQAFSAEDPESLRGPQFHAA--- 155
Query: 194 AVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
+ DE + + + R + T+ R D+ P R
Sbjct: 156 --WCDELAKWRYARETWDMLQFGLRLGDWPRQLVTTTP--RPTPLLKDLIAHPATVLTRA 211
Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
+ + F E ++++Y + + R E+ G+ ++ + + IE SR A
Sbjct: 212 -LTRENAANLAPSFLESVVAQY-AGTRLGRQELDGEIVEERKDALWTRDLIEA--SRVAD 267
Query: 312 DDLYAPLIMGCD-IAGEGG 329
A +++ D A G
Sbjct: 268 APRLARIVVAVDPPASFGK 286
>gi|298708865|emb|CBJ30823.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1899
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 34/181 (18%), Positives = 68/181 (37%), Gaps = 22/181 (12%)
Query: 71 NNSNPTIFKCAISAGRG-----------IGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
N+S T + ++ G GKT +L L+ RP I+ + S+T
Sbjct: 755 NDSQRTAVRDIVTGAHGQVPYIIFGPPGTGKTCTVIESILQLVKLRPECRILAVGPSDTS 814
Query: 120 LKNTLWAEVSKWLSM--LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--- 174
+ + +S+ +S L +W++ + +HP+ + + G+ TIT +
Sbjct: 815 -ADVICERLSRHMSRDQLVRINWWQRLTAGVHPNILSYCPQDSNRGMFVPPSTITHQVVV 873
Query: 175 -TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
T + +G + +F DE+S ++ L I+ + R+L
Sbjct: 874 CTCGTAGMLSVLGVDENYFTHIFVDESSN----AMETELLVPLSYAGRAQIILCGDPRQL 929
Query: 234 N 234
Sbjct: 930 G 930
>gi|329888629|ref|ZP_08267227.1| phage DNA packaging protein [Brevundimonas diminuta ATCC 11568]
gi|328847185|gb|EGF96747.1| phage DNA packaging protein [Brevundimonas diminuta ATCC 11568]
Length = 411
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 35/259 (13%), Positives = 73/259 (28%), Gaps = 19/259 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
A G G+ + +W ++ +I + L+ E+ L+ +
Sbjct: 23 RAAHG-GRGSAKSWSVV-------DAAIFHTVTTPR-LRVVFLREIMANLTESSLELVRK 73
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
++ E+ G+ + + +P+ +EA
Sbjct: 74 RLEHFGLLGSYFREVNGTFQGLGGQKIMFIG-LWKGGKPEGIKSLEGAG--LTILEEAQE 130
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT---RRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
+L + W + N F+ P +I+
Sbjct: 131 VRQASLDVLLPTILRTAISELWAIW-NPRLDTDPIDVFFRGPVKPKGA-IVRKINYDQNP 188
Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAP 317
E + + D A LG + ++EA R A + +
Sbjct: 189 HFPDALRELMELDFSKDKLRAAWIWLGGYMPSVQGAIWNREGLDEAWREGRHAPEGSWGR 248
Query: 318 LIMGCDIAGEGGDKTVVVF 336
+++G D +G G D +VV
Sbjct: 249 VVVGVDPSGGGDDVGIVVA 267
>gi|302521533|ref|ZP_07273875.1| involving differentiation [Streptomyces sp. SPB78]
gi|333024829|ref|ZP_08452893.1| putative differentiation protein [Streptomyces sp. Tu6071]
gi|302430428|gb|EFL02244.1| involving differentiation [Streptomyces sp. SPB78]
gi|332744681|gb|EGJ75122.1| putative differentiation protein [Streptomyces sp. Tu6071]
Length = 596
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 41/202 (20%), Positives = 57/202 (28%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG GK WQ ME P F A++ G GKTT
Sbjct: 20 PWGTAGKL-------RAWQEGAME--------RYVQEQPRDF-LAVATP-GAGKTTFALT 62
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ WL+ I +A +E + K + R ++
Sbjct: 63 LASWLLHHHVVQQITVVAPTEH---------LKKQWAEAAARIGIKLD------------ 101
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
+ S G SK Y TY+ H V DE +G ++
Sbjct: 102 -PDYSAGPVSKEYVGVAVTYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 158
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
L F R +T R
Sbjct: 159 CLEAF--EPATRRLALTGTPFR 178
>gi|3318666|gb|AAC26153.1| BBA31 homolog [Borrelia burgdorferi 297]
Length = 450
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ + G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERYRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|227500282|ref|ZP_03930349.1| terminase [Anaerococcus tetradius ATCC 35098]
gi|227217568|gb|EEI82880.1| terminase [Anaerococcus tetradius ATCC 35098]
Length = 466
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 47/302 (15%)
Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
P+ WQ + ++ + + + + GKT + LW + G +
Sbjct: 35 SPYPWQEKLIKDIFAVNDDGLWTHSKFGYAVPRRN----GKTEIVYMAELWFLM--DGKN 88
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
II A+ + + + ++ K+L + + +S+ ++ + +
Sbjct: 89 IIHTAHRISTSHS-SFKKLKKYLEKMGLVDKVDFKSIKAK--------GQEMIELIKTGG 139
Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
I RT +E G + V DEA + ++ T+ + + +
Sbjct: 140 VIQFRTRTETG-----GLGEGFDLLVI-DEAQEYTEGQESALKYTVTDSDNPMILMCGTP 193
Query: 230 TRRLNG--WFYD------IFNIPLEDWKRYQIDTRTVE-------GIDSG-----FHEGI 269
++G F W + + T + +
Sbjct: 194 PTLVSGGTVFSKYRDLILSGGKNHNGWAEWSVSEMTNPYDIDAWYKTNPSMGYKLRERAV 253
Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIP-HNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328
G D I+ LG + + + I ++ + + + L L +G G
Sbjct: 254 EEEIGPDETDFNIQRLGYWVKYNQKSVISKLDW--DRLKLTRLPSLVGKLHVGI---KYG 308
Query: 329 GD 330
D
Sbjct: 309 ND 310
>gi|323186590|gb|EFZ71927.1| gp33 TerL protein [Escherichia coli 1357]
Length = 503
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 21/224 (9%)
Query: 136 PHRHWFEMQSLSLHP-----SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
P +++ + W + M ++ + + +
Sbjct: 141 PKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GD 195
Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
F DEA+ + I ++ R + + N +N F
Sbjct: 196 RTTLYFVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMNNPFAQ--KRHSGKIPV 249
Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
+ R+ D ++ + +D+ V E+ + IP +++ A+
Sbjct: 250 FTFHWRSDPRKDDEWYHKECEK--IDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDAH 307
Query: 310 AIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
+ D+A EG DK R G ++ + +WS K
Sbjct: 308 IRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGK 351
>gi|226246423|ref|YP_002775825.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
gi|226201818|gb|ACO38403.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
Length = 450
Score = 42.4 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 46/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ NN + IF I++ GKT L +++++ + S
Sbjct: 46 TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K S+ + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
D F + ++ +EA+ + + + I
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIK--RLRKGKEIIIF 196
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
T N +F + + +K Y T + F + Y R +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSTDFIQTQEKLY-RRFPAYRARVL 254
Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
G++ E F E +++ + IM D A GGD T +
Sbjct: 255 YGEWILNESTLF-----NEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299
>gi|224796679|ref|YP_002641707.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|224553883|gb|ACN55283.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 47/293 (16%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ NN + IF I++ GKT L +++++ + S
Sbjct: 46 TAKQKEVLFDIES------NNYSKVIFSGGIAS----GKTFLASYLLVKKLIENKSFYEQ 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K S+ + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWI 225
D F + ++ +EA+ + + + I
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIK--RLRKGKEIIIF 196
Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
T N +F + + +K Y T + F + Y R +L
Sbjct: 197 DT-NPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVL 254
Query: 286 -GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
G++ E + E +++ + IM D A GGD T +
Sbjct: 255 YGEWILNE-----SMLFNEMIFNQDY---EFKSPIMYIDPAFSVGGDNTAICV 299
>gi|218780689|ref|YP_002432007.1| exodeoxyribonuclease V, alpha subunit [Desulfatibacillum
alkenivorans AK-01]
gi|218762073|gb|ACL04539.1| exodeoxyribonuclease V, alpha subunit [Desulfatibacillum
alkenivorans AK-01]
Length = 589
Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 20/145 (13%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
IS G G GKTT+ A ++ L+S G SI A + L + + K LS L
Sbjct: 160 ISGGPGTGKTTIAARIIRLLLSLADGRAPSIAITAPTGKAAARLLES-LGKELSRLGVPP 218
Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
+ + + + + ++ + P + DE
Sbjct: 219 G---------MEDAIPKRAKTIHRLMGARFNSSQFIHNADNPINAD--------ILIVDE 261
Query: 200 ASGTPDIINKSILGFFTELNPNRFW 224
AS + +L +
Sbjct: 262 ASMVELSLMARLLEALPDHGKLILL 286
>gi|188494674|ref|ZP_03001944.1| gp33 TerL [Escherichia coli 53638]
gi|188489873|gb|EDU64976.1| gp33 TerL [Escherichia coli 53638]
Length = 539
Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 11/165 (6%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N +N F
Sbjct: 195 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMNNPFAQ--KRHSGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
+ R+ D ++ + +D+ V E+ + IP +++ A+
Sbjct: 249 VFTFHWRSDPRKDDEWYHKECEK--IDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDA 306
Query: 309 EAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
+ D+A EG DK R G ++ + +WS K
Sbjct: 307 HIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGK 351
>gi|320010525|gb|ADW05375.1| type III restriction protein res subunit [Streptomyces flavogriseus
ATCC 33331]
Length = 593
Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 56/202 (27%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG GK WQ ME P F A++ G GKTT
Sbjct: 18 PWGTAGKL-------RAWQQGAME--------KYIQEQPRDF-LAVATP-GAGKTTFALT 60
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ WL+ I +A +E + K + R ++
Sbjct: 61 LASWLLHHHVVQQITVVAPTEH---------LKKQWAEAAARIGIKLD------------ 99
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
+ S G SK Y TY+ H V DE +G ++
Sbjct: 100 -PDYSAGPVSKEYHGVAITYAGVGVRPM--LHRNRCEQRKTLVILDEIHHAGDSKSWGEA 156
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
F R +T R
Sbjct: 157 CQEAF--DPATRRLALTGTPFR 176
>gi|322835667|ref|YP_004215693.1| terminase large subunit [Rahnella sp. Y9602]
gi|321170868|gb|ADW76566.1| terminase large subunit [Rahnella sp. Y9602]
Length = 539
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 20/215 (9%)
Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
GW A+ M ++ + + + F DEA+ + I
Sbjct: 162 GWSAKKHAPYMRVEFPTTGAVLKGEAGDNIGR-----GDRTTLYFVDEAAFLQRPL--LI 214
Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTVEGIDSGFHEGII 270
++ R + + N + F + + + R+ D ++
Sbjct: 215 EASLSQTTRCRIDLSSVN--GMANPFAQKRHGGRIPVFTFHW---RSDPRKDEAWYAKEC 269
Query: 271 SRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGE 327
++ +D+ V + L + IP+ +I A++ + + D+A E
Sbjct: 270 AK--IDNPVVVAQELDLNYSASAEGVLIPNEWIRAAINAHIKLGIQPTGKRLGAMDVADE 327
Query: 328 GGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQEG 360
G DK R G ++ + +WS I +++++
Sbjct: 328 GRDKNAFSARYGFLLTEVEEWSGVGSDIYKSSEKA 362
>gi|13242438|ref|NP_077457.1| DNA packaging terminase subunit 1 [Cercopithecine herpesvirus 9]
gi|11036590|gb|AAG27219.1|AF275348_40 unknown [Cercopithecine herpesvirus 9]
Length = 745
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 16/149 (10%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GKT ++ L+ST G+ + A+ + + E+ WF + +
Sbjct: 271 GKTWFIVSLIALLMSTFRGIKVGYTAHIRKATEPV-FEEIK-----ARLEQWFGTERIE- 323
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
E S T S + G +F DEA+
Sbjct: 324 ------HVKGESITFSFSDGCCSTAVFSSSHNTNGIRGQTFN---LLFVDEANFIRPDAV 374
Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWF 237
++I+GF + N ++ ++NT + + F
Sbjct: 375 QTIVGFLNQTNCKIIFVSSTNTGKASTSF 403
>gi|307544683|ref|YP_003897162.1| hypothetical protein HELO_2093 [Halomonas elongata DSM 2581]
gi|307216707|emb|CBV41977.1| K06909 [Halomonas elongata DSM 2581]
Length = 531
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 8/137 (5%)
Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
S + F + R D ++ + + EI
Sbjct: 229 STPNGMGNPFAQ--RRHSGKISVFTFHWRDDPRKDDAWYAKQVDELDPVT--VAQEIDIN 284
Query: 288 FPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
+ IP +++ A+ ++ ++ + D+A EG D+ R G +++ +
Sbjct: 285 YSASVEGVLIPSAWVQAAVDAHKKLGIEITGERLGALDVADEGKDQNAYAGRHGILLDLV 344
Query: 346 FDWSAK--LIQETNQEG 360
+W+ K I T Q+
Sbjct: 345 DEWTGKGSDIFGTVQKA 361
>gi|332088044|gb|EGI93169.1| gp33 TerL [Shigella boydii 5216-82]
Length = 539
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
F DEA+ + I ++ R + + N +N F
Sbjct: 195 DRTTLYFVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMNNPFAQ--KRHSGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
+ R+ D ++ + +D+ V E+ + IP +++ A+
Sbjct: 249 VFTFHWRSDPRKDDEWYHKECEK--IDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDA 306
Query: 309 EAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
+ D+A EG DK R G ++ + +WS K
Sbjct: 307 HIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGK 351
>gi|307940746|gb|ADN95987.1| polyprotein [Chionodraco hamatus]
Length = 2968
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM------MLWLISTRPGM 108
Q+ + C ++ NP F I+ G G GK+ L + +L + P
Sbjct: 2284 QMSIFYQIRQWCLDKISGKNPDPFHVFITGGAGTGKSHLIKALQYETTRLLSPLCDHPDS 2343
Query: 109 S-IICIANS 116
++ A +
Sbjct: 2344 VCVLLTAPT 2352
>gi|323173153|gb|EFZ58784.1| gp33 TerL protein [Escherichia coli LT-68]
Length = 539
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
F DEA+ + I ++ R + + N +N F
Sbjct: 195 DRTTLYFVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMNNPFAQ--KRHSGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
+ R+ D ++ + +D+ V E+ + IP +++ A+
Sbjct: 249 VFTFHWRSDPRKDDEWYHKECEK--IDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDA 306
Query: 309 EAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
+ D+A EG DK R G ++ + +WS K
Sbjct: 307 HIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGK 351
>gi|331650684|ref|ZP_08351739.1| conserved hypothetical protein [Escherichia coli M605]
gi|331040472|gb|EGI12647.1| conserved hypothetical protein [Escherichia coli M605]
Length = 414
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 15/176 (8%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
DEA+ + I ++ R + + N + F
Sbjct: 141 DRTTLYLVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMANPFAQ--KRHGGKIP 194
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEE---A 305
+ R D ++ + +D+ V + L + IP +++ A
Sbjct: 195 VFTFHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQATVDA 252
Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQE 359
+ I L D+A EG DK R G ++E++ +WS I ++ ++
Sbjct: 253 HIKLGIQPTGKRLGA-MDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEK 307
>gi|225576048|ref|YP_002724855.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|225546646|gb|ACN92649.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 450
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
D ++ I D A GGD T + R +
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|216996657|ref|YP_002333778.1| phage terminase, large subunit, PBSX family [Borrelia afzelii
ACA-1]
gi|216752579|gb|ACJ73283.1| phage terminase, large subunit, PBSX family [Borrelia afzelii
ACA-1]
Length = 450
Score = 42.0 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKIDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIAITDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERIDDK 306
>gi|226305996|ref|YP_002765956.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4]
gi|226185113|dbj|BAH33217.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4]
Length = 402
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 23/210 (10%), Positives = 61/210 (29%), Gaps = 20/210 (9%)
Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
+H + + FK + GR GKTT A + + A + Q ++
Sbjct: 3 RLHQSQRKIAESSSRFKV-LRCGRRFGKTTY-AVEEMKGACLFEPGPVAYFATTRDQARD 60
Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
+WAE+ + +++ ++ L + + + + T R
Sbjct: 61 IVWAELLE--NVIGTTNYVSHNEQRLEVTLRRPDGSLNRIRLFGWENIETARG------- 111
Query: 183 TFVGPHNTHGMAVF--NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
+ + V D + I + R M + + + +
Sbjct: 112 ------KKYSLVVLDELDSMRAFEKQWREIIRATLADY-RGRALFMGTPKGYKSLYRLEK 164
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
+ +++ + + + + +
Sbjct: 165 LSKTNANYEVFHFTSFDNPFLSVEELDEMR 194
>gi|225621767|ref|YP_002724125.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547658|gb|ACN93635.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDNPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNTATFKTYNFTTYDNVLLGKGFIEPQEKLY-KDIPTYKARVLLGEWIASIDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D +++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFSSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|237704849|ref|ZP_04535330.1| terminase large subunit [Escherichia sp. 3_2_53FAA]
gi|226901215|gb|EEH87474.1| terminase large subunit [Escherichia sp. 3_2_53FAA]
gi|315288241|gb|EFU47640.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
110-3]
Length = 471
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|260868683|ref|YP_003235085.1| putative terminase large subunit [Escherichia coli O111:H- str.
11128]
gi|293446697|ref|ZP_06663119.1| phage terminase large subunit [Escherichia coli B088]
gi|257765039|dbj|BAI36534.1| putative terminase large subunit [Escherichia coli O111:H- str.
11128]
gi|291323527|gb|EFE62955.1| phage terminase large subunit [Escherichia coli B088]
gi|323177130|gb|EFZ62720.1| phage terminase, large subunit, PBSX family [Escherichia coli 1180]
Length = 471
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|211731828|gb|ACJ10140.1| terminase [Bacteriophage APSE-6]
Length = 469
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 22/183 (12%), Positives = 51/183 (27%), Gaps = 38/183 (20%)
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------- 245
+ +EA + +++ + + + N +G Y F P
Sbjct: 105 WVEEAETVSEKSLDTLIPTIRKPGSELRF--SFNPAEEDGAVYKRFVKPYKAIIDKQGYY 162
Query: 246 ---EDW-------KRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
+ + + + + ++ YG + D
Sbjct: 163 EDDDLYVGNVSYLDNPWLPVELKNDAQKMKRENYKKWRHVYGGECDANY----------- 211
Query: 293 VNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
+ I ++ A+ + ++ D AG G D+ + R G +IE W
Sbjct: 212 EDALIQPEWVGAAIDAHIKLGFKPSGIRVVTFDPAGSGQDEKALSKRYGVLIEDCVSWLE 271
Query: 351 KLI 353
+
Sbjct: 272 GDV 274
>gi|225621943|ref|YP_002724616.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547242|gb|ACN93227.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y + + + LG++ + F N
Sbjct: 212 IDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KEIPTYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D ++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFTSPIAYLDPAFSIGGDNTALCVMERVDDK 306
>gi|317483571|ref|ZP_07942553.1| phage terminase [Bifidobacterium sp. 12_1_47BFAA]
gi|316914997|gb|EFV36437.1| phage terminase [Bifidobacterium sp. 12_1_47BFAA]
Length = 487
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 27/189 (14%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
RWQ + + ++ +I R GKT + +++ L + P +++I
Sbjct: 42 DRWQQGLLTLILGRRADGTFAASVGGVVLSI--CRQTGKTFTVSSLVVILCTLIPNLTVI 99
Query: 112 CIA-------NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
A N+ ++ + + + + G+
Sbjct: 100 WTAHHNRTNSNTFDHVRTLV------------RNPAL----IGYLDHSGRTDGVRGGNGM 143
Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
+ + R F N + DEA + ++ T +PN
Sbjct: 144 QEITFANGSKILFGARAQGFA-RGNDAVDIIVFDEAQILTEQAISDMVPA-TNTSPNALV 201
Query: 225 IMTSNTRRL 233
+ R
Sbjct: 202 LYIGTPPRP 210
>gi|326779045|ref|ZP_08238310.1| type III restriction protein res subunit [Streptomyces cf. griseus
XylebKG-1]
gi|326659378|gb|EGE44224.1| type III restriction protein res subunit [Streptomyces cf. griseus
XylebKG-1]
Length = 609
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 56/202 (27%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG GK WQ ME P F A++ G GKTT
Sbjct: 34 PWGTAGKL-------RAWQQGAME--------RYVQEQPRDF-LAVATP-GAGKTTFALT 76
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ WL+ I +A +E + K + R ++
Sbjct: 77 LASWLLHHHVVQQITVVAPTEH---------LKKQWAEAAARIGIKLD------------ 115
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
+ S G SK Y TY+ H V DE +G ++
Sbjct: 116 -PDYSAGPLSKEYHGVAVTYAGVGVRPM--LHRNRCEQRKTLVILDEIHHAGDSKSWGEA 172
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
F R +T R
Sbjct: 173 CQEAF--DPATRRLALTGTPFR 192
>gi|294492319|gb|ADE91075.1| phage terminase, large subunit, PBSX family [Escherichia coli
IHE3034]
Length = 471
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|182438394|ref|YP_001826113.1| hypothetical protein SGR_4601 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466910|dbj|BAG21430.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 609
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 56/202 (27%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG GK WQ ME P F A++ G GKTT
Sbjct: 34 PWGTAGKL-------RAWQQGAME--------RYVQEQPRDF-LAVATP-GAGKTTFALT 76
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ WL+ I +A +E + K + R ++
Sbjct: 77 LASWLLHHHVVQQITVVAPTEH---------LKKQWAEAAARIGIKLD------------ 115
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
+ S G SK Y TY+ H V DE +G ++
Sbjct: 116 -PDYSAGPLSKEYHGVAVTYAGVGVRPM--LHRNRCEQRKTLVILDEIHHAGDSKSWGEA 172
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
F R +T R
Sbjct: 173 CQEAF--DPATRRLALTGTPFR 192
>gi|168467237|ref|ZP_02701079.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
SL317]
gi|195630466|gb|EDX49092.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
SL317]
Length = 539
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 11/165 (6%)
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
F DEA+ + I ++ R + + N +N F
Sbjct: 195 DRTTLYFVDEAAFLQRPL--LIDAALSQTTRCRIDLSSVN--GMNNPFAQ--KRHSGKIP 248
Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMS- 307
+ R+ D ++ + +D+ + E+ + IP +++ A+
Sbjct: 249 VFTFHWRSDPRKDDEWYRKECEK--IDNPIIVAQELDLNYQASAEGILIPSEWVQAAVDA 306
Query: 308 -REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
+ + D+A EG DK R G ++ + +WS K
Sbjct: 307 HIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSDVQEWSGK 351
>gi|320179507|gb|EFW54461.1| Phage terminase, large subunit [Shigella boydii ATCC 9905]
Length = 539
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 291 QEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
IP +++ A+ + D+A EG DK R G ++ + +W
Sbjct: 289 SAEGILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEW 348
Query: 349 SAK 351
S K
Sbjct: 349 SGK 351
>gi|222032743|emb|CAP75482.1| Terminase large subunit [Escherichia coli LF82]
Length = 470
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|325497784|gb|EGC95643.1| gene 2 protein [Escherichia fergusonii ECD227]
Length = 470
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|300897414|ref|ZP_07115839.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
198-1]
gi|300358826|gb|EFJ74696.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
198-1]
Length = 470
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|41057280|ref|NP_958178.1| gene 2 protein [Enterobacteria phage Sf6]
gi|191165541|ref|ZP_03027382.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A]
gi|218695968|ref|YP_002403635.1| Terminase large subunit [Escherichia coli 55989]
gi|331678314|ref|ZP_08378989.1| phage terminase, large subunit, PBSX family [Escherichia coli H591]
gi|33334159|gb|AAQ12192.1| gene 2 protein [Shigella phage Sf6]
gi|190904464|gb|EDV64172.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A]
gi|218352700|emb|CAU98482.1| Terminase large subunit [Escherichia coli 55989]
gi|324114096|gb|EGC08069.1| phage terminase large subunit [Escherichia fergusonii B253]
gi|331074774|gb|EGI46094.1| phage terminase, large subunit, PBSX family [Escherichia coli H591]
Length = 470
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|91211665|ref|YP_541651.1| terminase large subunit [Escherichia coli UTI89]
gi|117624554|ref|YP_853467.1| phage terminase large subunit [Escherichia coli APEC O1]
gi|218559279|ref|YP_002392192.1| Terminase large subunit [Escherichia coli S88]
gi|91073239|gb|ABE08120.1| terminase large subunit [Escherichia coli UTI89]
gi|115513678|gb|ABJ01753.1| phage terminase large subunit [Escherichia coli APEC O1]
gi|148566126|gb|ABQ88401.1| phage terminase large subunit [Enterobacteria phage CUS-3]
gi|218366048|emb|CAR03793.1| Terminase large subunit [Escherichia coli S88]
gi|307626097|gb|ADN70401.1| terminase large subunit [Escherichia coli UM146]
gi|323948780|gb|EGB44679.1| phage terminase large subunit [Escherichia coli H252]
Length = 471
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|323936486|gb|EGB32774.1| phage terminase large [Escherichia coli E1520]
Length = 470
Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|13559866|ref|NP_112076.1| terminase large subunit [Enterobacteria phage HK620]
gi|13517602|gb|AAK28891.1|AF335538_43 terminase large subunit [Salmonella phage HK620]
Length = 470
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|110804738|ref|YP_688258.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
gi|110614286|gb|ABF02953.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
Length = 255
Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 295 NFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
I ++IE A+ + + +G D+A G DK V+R G+++ +W AK
Sbjct: 10 AIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 69
>gi|195942758|ref|ZP_03088140.1| hypothetical protein Bbur8_08065 [Borrelia burgdorferi 80a]
Length = 312
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 18/168 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNIIEHI 345
+ D ++ I D A GD T + R + I
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVRGDNTALCVMERVDDQFRTI 310
>gi|225622132|ref|YP_002725127.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
gi|225546387|gb|ACN92395.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
Length = 450
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFVETQEKLY-KDIPSYQARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
D ++ I D A GGD T + R +
Sbjct: 271 ITN--------DYVFTSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|219846951|ref|YP_002333526.2| DNA packaging terminase subunit 1 [Equid herpesvirus 9]
gi|226423816|dbj|BAH02470.2| DNA packaging protein [Equid herpesvirus 9]
Length = 734
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 22/152 (14%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
GKT ++ ++T G+ I A+ + + + A + +W P H
Sbjct: 264 GKTWFLVPLIALALATFKGIKIGYTAHIRKATEPVFDEIGARLRQWFGNSPVDHVKGENI 323
Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
P G + ++ S + G +F DEA+
Sbjct: 324 SFSFPDGSKSTIVF----------------ASSHNTNGIRGQDFN---LLFVDEANFIRP 364
Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
++I+GF + N ++ ++NT + + F
Sbjct: 365 EAVQTIIGFLNQTNCKIIFVSSTNTGKASTSF 396
>gi|9629774|ref|NP_045262.1| DNA packaging terminase subunit 1 [Equid herpesvirus 4]
gi|2605992|gb|AAC59564.1| 47/44 [Equid herpesvirus 4]
Length = 734
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 22/152 (14%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
GKT ++ ++T G+ I A+ + + + A + +W P H
Sbjct: 264 GKTWFLVPLIALALATFKGIKIGYTAHIRKATEPVFDEIGARLRQWFGNSPVDHVKGENI 323
Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
P G + ++ S + G +F DEA+
Sbjct: 324 SFSFPDGSKSTIVF----------------ASSHNTNGIRGQDFN---LLFVDEANFIRP 364
Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
++I+GF + N ++ ++NT + + F
Sbjct: 365 EAVQTIIGFLNQTNCKIIFVSSTNTGKASTSF 396
>gi|50313286|ref|YP_053090.1| DNA packaging terminase subunit 1 [Equid herpesvirus 1]
gi|139648|sp|P28969|TRM3_EHV1B RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
Full=DNA-packaging protein 44; AltName: Full=Terminase
large subunit
gi|59798996|sp|P84396|TRM3_EHV1V RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
Full=DNA-packaging protein 44; AltName: Full=Terminase
large subunit
gi|42795172|gb|AAS45929.1| putative terminase [Equid herpesvirus 1]
gi|49617029|gb|AAT67302.1| DNA packaging protein [Equid herpesvirus 1]
Length = 734
Score = 41.6 bits (96), Expect = 0.20, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 22/152 (14%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
GKT ++ ++T G+ I A+ + + + A + +W P H
Sbjct: 264 GKTWFLVPLIALALATFKGIKIGYTAHIRKATEPVFDEIGARLRQWFGNSPVDHVKGENI 323
Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
P G + ++ S + G +F DEA+
Sbjct: 324 SFSFPDGSKSTIVF----------------ASSHNTNGIRGQDFN---LLFVDEANFIRP 364
Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
++I+GF + N ++ ++NT + + F
Sbjct: 365 EAVQTIIGFLNQTNCKIIFVSSTNTGKASTSF 396
>gi|262200363|ref|YP_003271571.1| NERD domain-containing protein [Gordonia bronchialis DSM 43247]
gi|262083710|gb|ACY19678.1| NERD domain protein [Gordonia bronchialis DSM 43247]
Length = 550
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 5/171 (2%)
Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
+ + + + ++ + + I G G GKT L + +R G + I S
Sbjct: 200 DATAEIITEQQAVILSAISKLSRVEIRGGAGSGKTFL--ALEQARRLSRAGQRVALICYS 257
Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
L + S W + E L + ++ + T
Sbjct: 258 HG-LASYFTRITSHWSRREQPAYIGEFHDLGITWGASAGPDESVRTQEAAEFWEHTLPHQ 316
Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
E + H A+ DEA D +L + + ++ +
Sbjct: 317 MVELAEALPPGHRFD--AIVIDEAQDFADDWWLPLLACLRDPGTSGIYLFS 365
>gi|167553969|ref|ZP_02347711.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205321713|gb|EDZ09552.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
Length = 539
Score = 41.3 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 291 QEVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
IP +++ A+ + + D+A EG DK R G ++ + +W
Sbjct: 289 STEGILIPSEWVQAAVDAHIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSDVQEW 348
Query: 349 SAK 351
S K
Sbjct: 349 SGK 351
>gi|254485756|ref|ZP_05098961.1| phage DNA Packaging Protein [Roseobacter sp. GAI101]
gi|214042625|gb|EEB83263.1| phage DNA Packaging Protein [Roseobacter sp. GAI101]
Length = 452
Score = 41.3 bits (95), Expect = 0.24, Method: Composition-based stats.
Identities = 44/272 (16%), Positives = 78/272 (28%), Gaps = 47/272 (17%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNTLWAEVSKWL 132
I GRG GKT A W+ S G + + + Q++ + S L
Sbjct: 60 IMGGRGAGKTRAGA---EWVRSMVEGARPLDAGRCRRVALVGETIEQVREVMIFGDSGIL 116
Query: 133 SMLP--HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
+ P R +E L ++ P+ GP
Sbjct: 117 ACSPADRRPDWEATRKRL-----------------VWPNGAVASVHTAHDPEGLRGPQFD 159
Query: 191 HGMAVFNDEAS--GTPDIINKSILGFF-TELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
A + DE + + + +P + + T R + P
Sbjct: 160 ---AAWVDELAKWKKAEETWDQLQFALRLGEDPR---VCVTTTPRNVDVLKKLLASPSTV 213
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
+ + F E + +RY + + R E+ G +E
Sbjct: 214 -TTHAPTEANAANLAGSFLEEVRARY-RGTRLGRQELDGVLLADAEGALWTSEMLER--G 269
Query: 308 REAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
R + +++G D AG G D+ +V
Sbjct: 270 RIEKLPTFDRIVVGVDPATTAGAGSDECGIVV 301
>gi|327400267|ref|YP_004341106.1| hypothetical protein Arcve_0358 [Archaeoglobus veneficus SNP6]
gi|327315775|gb|AEA46391.1| protein of unknown function DUF699 ATPase [Archaeoglobus veneficus
SNP6]
Length = 807
Score = 41.3 bits (95), Expect = 0.25, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 25/141 (17%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLIS-----TRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
I+A RG GKT + + +LIS + + I+ +A + ++ + + K L
Sbjct: 275 VVITADRGRGKTAVLGIVTPYLISRMHRVLKRPVRIMVVAPTPQAVQTY-FRFLKKALVR 333
Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
Q + + L+ ++ + R E+ +
Sbjct: 334 ---------QGMKNYKVKESNGLITVINSKFARVEYVVPRRAMIEK---------DYADI 375
Query: 195 VFNDEASGTPDII-NKSILGF 214
+ DEA+G + + G
Sbjct: 376 IIVDEAAGIDVPVLWQITEGA 396
>gi|168239626|ref|ZP_02664684.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197287704|gb|EDY27095.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 470
Score = 41.3 bits (95), Expect = 0.26, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYAAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILVPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|324019922|gb|EGB89141.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
117-3]
Length = 471
Score = 41.3 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKCIAEGLLMDINE 276
>gi|323352542|gb|EGA85041.1| Kre33p [Saccharomyces cerevisiae VL3]
Length = 966
Score = 41.3 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 16/156 (10%)
Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
+ +D +N F A++AGRG GK+ + + +I + S
Sbjct: 173 ILSFIDAISEKTLN------FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSP 225
Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
LK L+ + K L ++ + + + ++ + D + +T
Sbjct: 226 ENLKT-LFEFIFKGFDALGYQEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQ 278
Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
P V DEA+ P I K++LG
Sbjct: 279 YIVPQDHQVLGQAE--LVVIDEAAAIPLPIVKNLLG 312
>gi|323335941|gb|EGA77219.1| Kre33p [Saccharomyces cerevisiae Vin13]
Length = 961
Score = 41.3 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 16/156 (10%)
Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
+ +D +N F A++AGRG GK+ + + +I + S
Sbjct: 173 ILSFIDAISEKTLN------FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSP 225
Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
LK L+ + K L ++ + + + ++ + D + +T
Sbjct: 226 ENLKT-LFEFIFKGFDALGYQEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQ 278
Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
P V DEA+ P I K++LG
Sbjct: 279 YIVPQDHQVLGQAE--LVVIDEAAAIPLPIVKNLLG 312
>gi|190409119|gb|EDV12384.1| hypothetical protein SCRG_03266 [Saccharomyces cerevisiae RM11-1a]
Length = 1056
Score = 41.3 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 16/156 (10%)
Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
+ +D +N F A++AGRG GK+ + + +I + S
Sbjct: 263 ILSFIDAISEKTLN------FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSP 315
Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
LK L+ + K L ++ + + + ++ + D + +T
Sbjct: 316 ENLKT-LFEFIFKGFDALGYQEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQ 368
Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
P V DEA+ P I K++LG
Sbjct: 369 YIVPQDHQVLGQAE--LVVIDEAAAIPLPIVKNLLG 402
>gi|151944405|gb|EDN62683.1| killer toxin resistant protein [Saccharomyces cerevisiae YJM789]
gi|207341763|gb|EDZ69729.1| YNL132Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273837|gb|EEU08759.1| Kre33p [Saccharomyces cerevisiae JAY291]
gi|259149229|emb|CAY82471.1| Kre33p [Saccharomyces cerevisiae EC1118]
Length = 1056
Score = 41.3 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 16/156 (10%)
Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
+ +D +N F A++AGRG GK+ + + +I + S
Sbjct: 263 ILSFIDAISEKTLN------FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSP 315
Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
LK L+ + K L ++ + + + ++ + D + +T
Sbjct: 316 ENLKT-LFEFIFKGFDALGYQEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQ 368
Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
P V DEA+ P I K++LG
Sbjct: 369 YIVPQDHQVLGQAE--LVVIDEAAAIPLPIVKNLLG 402
>gi|6324197|ref|NP_014267.1| Kre33p [Saccharomyces cerevisiae S288c]
gi|1730777|sp|P53914|KRE33_YEAST RecName: Full=UPF0202 protein KRE33; AltName: Full=Killer
toxin-resistance protein 33
gi|854505|emb|CAA86893.1| orf16 [Saccharomyces cerevisiae]
gi|1302072|emb|CAA96014.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285814522|tpg|DAA10416.1| TPA: Kre33p [Saccharomyces cerevisiae S288c]
Length = 1056
Score = 41.3 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 16/156 (10%)
Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
+ +D +N F A++AGRG GK+ + + +I + S
Sbjct: 263 ILSFIDAISEKTLN------FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSP 315
Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
LK L+ + K L ++ + + + ++ + D + +T
Sbjct: 316 ENLKT-LFEFIFKGFDALGYQEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQ 368
Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
P V DEA+ P I K++LG
Sbjct: 369 YIVPQDHQVLGQAE--LVVIDEAAAIPLPIVKNLLG 402
>gi|24112089|ref|NP_706599.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30062202|ref|NP_836373.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|24050918|gb|AAN42306.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30040447|gb|AAP16179.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|281600053|gb|ADA73037.1| putative bacteriophage protein [Shigella flexneri 2002017]
gi|332768291|gb|EGJ98476.1| hypothetical protein SF293071_0835 [Shigella flexneri 2930-71]
Length = 179
Score = 41.3 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 295 NFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
I ++IE A+ + + +G D+A G DK V+R G+++ +W AK
Sbjct: 10 AIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 69
>gi|288931818|ref|YP_003435878.1| hypothetical protein Ferp_1452 [Ferroglobus placidus DSM 10642]
gi|288894066|gb|ADC65603.1| protein of unknown function DUF699 ATPase putative [Ferroglobus
placidus DSM 10642]
Length = 763
Score = 41.3 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 26/159 (16%)
Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-----TRPGMSIICIANS 116
V + + I+A RG GKT + + +LIS + + I+ +A +
Sbjct: 216 VLEAFETFFDRKREKKAVV-ITANRGRGKTAVLGIVTPYLISRMNRVLKRPVRILVVAPT 274
Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
++ K+L R Q + +L+ ++ R
Sbjct: 275 PYAVQTYF-----KFLKKALVR-----QGMKEFKEKRSNDLVTVINSKWARVEYAVPRRA 324
Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGF 214
E+ + + DEA+G + K + G
Sbjct: 325 MVEK---------DYADIIIVDEAAGIDVPVLWKIVEGA 354
>gi|326782137|ref|YP_004322538.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM1]
gi|310004344|gb|ADO98737.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM1]
Length = 560
Score = 41.3 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 50/340 (14%), Positives = 101/340 (29%), Gaps = 72/340 (21%)
Query: 12 EQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVN 71
++++ E L E + F ++ P + +Q E +E+ + +
Sbjct: 23 KEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDM----WDFQEELIESFHENRFNIAK 78
Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
GK+T +L I +++ +AN + ++ L +
Sbjct: 79 LPRQ------------TGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLL----GRL 122
Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
+ Q + ++ + EL S + + R S
Sbjct: 123 QLAYEQLPLWLQQGIVVY-NKGSMELENGSKILAASTSASAVRGMSFN------------ 169
Query: 192 GMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIP 244
+F DE + P+ I S+ T + I+ S +N FY ++
Sbjct: 170 --IIFLDEFAFIPNHIAEQFFSSVYPTITS-GTSTKVIIISTPNGMN-HFYKLWVDAQKG 225
Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH--NYI 302
+ ++ V G D+ + E I+ QF Q+ F+ I
Sbjct: 226 RNGYAWSEVHWSKVPGRDAKWKEQTIANTSER----------QFTQEFDCEFLGSVDTLI 275
Query: 303 EEAMSREAIDD-----------LYAPL-----IMGCDIAG 326
A R D P+ I+ D++
Sbjct: 276 TAAKLRTLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSR 315
>gi|254884963|ref|ZP_05257673.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|254837756|gb|EET18065.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
Length = 566
Score = 40.9 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 27/196 (13%)
Query: 82 ISAGRGIGKTTLN----AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
+ AGRG+ K+T+ ++ +W + PG + +AN+ LK+ + V K M+
Sbjct: 38 VIAGRGMSKSTVIQSRRSYRCIWEM---PGAPLAFVANTYANLKDNIMPAVQKGWEMMGL 94
Query: 138 RHWFEMQSLSLHPSGWYAE---LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
P W A+ ++ S S + P G +
Sbjct: 95 YEGVHYIRGKEPPVSWKAKCSIIVNDYRNCYSFWNGSVIFMGSLDNPSLLAG---KSVVH 151
Query: 195 VFNDEASGTPD----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
+F DE+ D + G + ++ + T + N DW
Sbjct: 152 LFYDESKYDKDEKVNRAMPVLRGDSLTYGASHLFLGLTITTDMPDV-----NEGEYDWYF 206
Query: 251 YQIDTRTVEGIDSGFH 266
R +D
Sbjct: 207 -----RYAPNMDPDRI 217
>gi|251778523|ref|ZP_04821443.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243082838|gb|EES48728.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 448
Score = 40.9 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 36/276 (13%), Positives = 80/276 (28%), Gaps = 40/276 (14%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
G G GK+ M+ P + I L+++++
Sbjct: 48 GGAGSGKSHFVVQKMILKYLEYPNRKCLVIRKVGNSLRDSIF------------------ 89
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA-------VF 196
+ S W+ + ++ T F G ++ + +
Sbjct: 90 ELFKTVLSDWHL------LERCEIRDSLLSITLPNGSTFIFKGLDDSEKIKSIANIDDIV 143
Query: 197 NDEASGTPDIINKSILGFFTELNP-NRFWIMTSNTRRLNGWFYDI-FNIPLEDWKRYQID 254
+E + + N N+ +M N + W Y++ F ++ +
Sbjct: 144 VEECTEIDKQEFSQLGLRLRSKNGYNQIHVMF-NPISKSNWVYEMWFQNGYDESDTMVLK 202
Query: 255 T--RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY--IEEAMSREA 310
T + + + + +I D RI LG+F ++ I N+ ++ +
Sbjct: 203 TTYKDNKFLPYDYINALIKMKETDPVYYRIYALGEF--ASLDKLIYTNWEELDFDWRKLM 260
Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
YA G D + + + I+
Sbjct: 261 QQRPYAKACFGLDFGYVNDPSAFIAMIVDEVNKEIY 296
>gi|53793591|ref|YP_112491.1| terminase large subunit [Flavobacterium phage 11b]
gi|53748181|emb|CAH56642.1| terminase large subunit [Flavobacterium phage 11b]
Length = 432
Score = 40.9 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 16/170 (9%)
Query: 196 FNDEASGTPDIINKS----ILGFFTELNPNRFWIMTSNTRRLNGW--FY--DIFNIPLED 247
F DE + + I + + T N + + FY D D
Sbjct: 126 FIDECNQITYKAWQIVKSRIRYKLNQYGIEPKMLGTCNPAKNWVYAQFYLKDKNGTLDND 185
Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQFP-QQEVNNFIPHNYIEEA 305
K Q + + + ++S +S + + G + + I + I+
Sbjct: 186 KKFIQALPTDNPHLPASYLTSLLSL-DENS---KQRLYYGNWEYDNDPAKLIDYEKIQNC 241
Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
+ I + + + DIA G DK V+ G + IF + I E
Sbjct: 242 FTNTFIP--FGEMYISADIARFGSDKMVICVWSGFRVVEIFSMAKSSITE 289
>gi|18496890|ref|NP_569740.1| putative terminase gp4 [Mycobacterium phage TM4]
gi|4336041|gb|AAD17572.1| putative terminase gp4 [Mycobacterium phage TM4]
Length = 474
Score = 40.9 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 21/183 (11%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
WQ + + + + ++ +F +I R GKT L ++ L P ++I
Sbjct: 41 DLWQDDLGKLICAKRDDGLYAAD--MFAMSI--PRQTGKTYLLGALVFALCIKTPNTTVI 96
Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
A+ + AE + + L R L++H +L + +
Sbjct: 97 WTAH-----RTRTAAETFRSMQGLAKRDKIAPHILNVHTGNGKEAVLFK----NGSRILF 147
Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
R + G + DEA + ++ T PN ++
Sbjct: 148 GAR-------ERGFGRGFAGVDVLIFDEAQILTENAMDDMVPA-TNAAPNPLILLAGTPP 199
Query: 232 RLN 234
+
Sbjct: 200 KPT 202
>gi|326783087|ref|YP_004323484.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM2]
gi|310005505|gb|ADO99893.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM2]
Length = 560
Score = 40.9 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 50/334 (14%), Positives = 104/334 (31%), Gaps = 58/334 (17%)
Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
+ ++ E L E + F ++ P + +Q E +E+ H +
Sbjct: 22 TKHQIQEYLKCKEDPVYFAMNYIKIISLDEGIVPFKM----WDFQQELIESFHEHRFNIA 77
Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
GK+T +L I +++ +AN + ++ L S+
Sbjct: 78 KLPRQ------------TGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLL----SR 121
Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
+ Q + ++ + EL S + + R S
Sbjct: 122 LQLAYEQLPLWIQQGIVVY-NKGSMELENGSKILAASTSASAVRGMSFN----------- 169
Query: 191 HGMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NI 243
+F DE + P+ I S+ T + I+ S +N FY ++
Sbjct: 170 ---IIFLDEFAFIPNHIAEQFFSSVYPTITS-GTSTKVIIISTPNGMN-HFYKLWVDAQK 224
Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI- 302
+ ++ V G D+ + E I+ E +F V+ I + +
Sbjct: 225 GRNGYAWNEVHWSKVPGRDAKWKEQTIANTSERQ--FTQEFDCEF-LGSVDTLITASKLR 281
Query: 303 ----EEAMSREAIDDLYAPL------IMGCDIAG 326
++ M+ D+Y I+ D++
Sbjct: 282 VLTYDDVMTTNGSLDIYEKPIDKHEYIITVDVSR 315
>gi|156847104|ref|XP_001646437.1| hypothetical protein Kpol_1048p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156117114|gb|EDO18579.1| hypothetical protein Kpol_1048p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 1055
Score = 40.9 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 16/156 (10%)
Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
+ +D +N++ ++AGRG GK+ + + +I + S
Sbjct: 263 ILSFIDAISEKTLNST------VTLTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSP 315
Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
LK L+ + K L ++ + + + ++ + D + +T
Sbjct: 316 ENLKT-LFEFIFKAFDALGYQEHIDYDIIQSTNPQFNKAIVRVDIKRDHR------QTIQ 368
Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
P V DEA+ P I K +LG
Sbjct: 369 YIMPQDHQVLGQAE--LVVIDEAAAIPLPIVKKLLG 402
>gi|157159763|ref|YP_001457081.1| PBSX family phage terminase large subunit [Escherichia coli HS]
gi|300935792|ref|ZP_07150755.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
21-1]
gi|157065443|gb|ABV04698.1| phage terminase, large subunit, pbsx family [Escherichia coli HS]
gi|300459025|gb|EFK22518.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
21-1]
Length = 471
Score = 40.9 bits (94), Expect = 0.33, Method: Composition-based stats.
Identities = 30/267 (11%), Positives = 75/267 (28%), Gaps = 21/267 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ I ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFD 347
D + G D R G++++ I +
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAE 268
>gi|34365522|tpg|DAA01288.1| TPA_exp: replicase/helicase/endonuclease [Danio rerio]
Length = 3007
Score = 40.9 bits (94), Expect = 0.35, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 26/131 (19%)
Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSF----KNFVMR----FFPWGIKGKPLEHFSQPH 52
M + ++ E+ + ++ A ++ N + R + L F +
Sbjct: 2248 MKDKLQQVEEHEEHIPDLASEANQKVAHLEKKNNIMCRRDGLALIRSLNDTQLSIFYEIR 2307
Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL------NAWMMLWLISTRP 106
+W L+ V NP+ I+ G G GK+ L A +L + P
Sbjct: 2308 QWCLD-----------KVMGKNPSPVHLFITGGAGTGKSHLIKAIQYEAMRILSTVCRHP 2356
Query: 107 G-MSIICIANS 116
+S++ A +
Sbjct: 2357 DNISVLLTAPT 2367
>gi|218964078|ref|YP_002455438.1| putative phage terminase, pbsx family protein [Borrelia afzelii
ACA-1]
gi|216752969|gb|ACJ73583.1| putative phage terminase, pbsx family protein [Borrelia afzelii
ACA-1]
Length = 450
Score = 40.9 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 44/292 (15%), Positives = 82/292 (28%), Gaps = 45/292 (15%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ H T K S G GKT L +++++ + S
Sbjct: 46 TTKQKEVLFDIESH----------TYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQ 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K + + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTIKQIEKICGL------LGIDYQKKKSGQSFCKIAGLELNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
D F + ++ +EA+ ++ I
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVMKRL--RKGKSIIIF 196
Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL- 285
+N +F + + +K Y T + F E Y + +L
Sbjct: 197 DTNPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLY-KHFPAYKARVLY 255
Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
G++ E + + D + IM D A GGD T V
Sbjct: 256 GEWVLNES-SLFNEMIFNQ-------DYEFKSPIMYIDPAFSVGGDNTAVCV 299
>gi|117621599|ref|YP_853855.1| hypothetical protein BAPKO_2028 [Borrelia afzelii PKo]
gi|110890985|gb|ABH02150.1| hypothetical protein BAPKO_2028 [Borrelia afzelii PKo]
Length = 450
Score = 40.9 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 44/292 (15%), Positives = 82/292 (28%), Gaps = 45/292 (15%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ H T K S G GKT L +++++ + S
Sbjct: 46 TTKQKEVLFDIESH----------TYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQ 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K + + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTIKQIEKICGL------LGIDYQKKKSGQSFCKIAGLELNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
D F + ++ +EA+ ++ I
Sbjct: 150 GK-----------NRDAFSKIRGGNSAIIYVNEATVIHKETLLEVMKRL--RKGKSIIIF 196
Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL- 285
+N +F + + +K Y T + F E Y + +L
Sbjct: 197 DTNPESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLY-KHFPAYKARVLY 255
Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
G++ E + + D + IM D A GGD T V
Sbjct: 256 GEWVLNES-SLFNEMIFNQ-------DYEFKSPIMYIDPAFSVGGDNTAVCV 299
>gi|299531659|ref|ZP_07045064.1| putative phage associated protein [Comamonas testosteroni S44]
gi|298720375|gb|EFI61327.1| putative phage associated protein [Comamonas testosteroni S44]
Length = 436
Score = 40.5 bits (93), Expect = 0.38, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 64/178 (35%), Gaps = 23/178 (12%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GK+ A ++L + ++RP ++C E+ K + H+ +
Sbjct: 39 GGRGGGKSWTVAAVLLVMAASRPL-RVLCT------------REIQKSIKQSVHQ-LLKD 84
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHY-TITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
L+ ++ L + GI+ + ++++ + +F G V+ +EA G
Sbjct: 85 VITRLNLHAFFEVLETEVRGINGSLFLFSGLQSHTVDSIKSFEGCD-----IVWVEEAHG 139
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVE 259
+++ + + + N Y F P D +I+ R
Sbjct: 140 VSKKSWDTLIPTIRKEGSEIWLTL--NPDMETDETYQRFIATPSPDTWVVEINWRDNP 195
>gi|256422889|ref|YP_003123542.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588]
gi|256037797|gb|ACU61341.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588]
Length = 471
Score = 40.5 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 11/137 (8%)
Query: 223 FWIMTSNTRRL--NGWFYDIFNIPL--EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
+T N ++ + F+ F + K Q + ID G+ + ++S +
Sbjct: 190 RIFVTLNPKKNWCHTVFWKPFKAGQLPDKVKFLQALVQDNPFIDPGYIDNLMS---ITDK 246
Query: 279 VARIEIL-GQFP-QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
V + +L G F + N + ++ I + + E + + + DIA G DK+VV+
Sbjct: 247 VKKQRLLYGNFDYDDDDNALMEYDSINDIFTNEFVVE--GKKYITADIARFGSDKSVVMV 304
Query: 337 RRGNIIEHIFDWSAKLI 353
G + I +
Sbjct: 305 WNGLRVVEIRKFEKMRT 321
>gi|260856407|ref|YP_003230298.1| putative terminase large subunit [Escherichia coli O26:H11 str.
11368]
gi|257755056|dbj|BAI26558.1| putative terminase large subunit [Escherichia coli O26:H11 str.
11368]
Length = 470
Score = 40.5 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 75/275 (27%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIM 320
+ + + R LG+ I ++E A ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHTKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|158318502|ref|YP_001511010.1| helicase domain-containing protein [Frankia sp. EAN1pec]
gi|158113907|gb|ABW16104.1| helicase domain protein [Frankia sp. EAN1pec]
Length = 1143
Score = 40.5 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 5/125 (4%)
Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
K + E+ +L + + +L S W L E ++ D+ Y R
Sbjct: 284 KTYIAGELLHEAVILNRQKALVVAPATLRDSTWKPFLRETNLPADTVSYEELTRGMPAAG 343
Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---FTELNPNRFWIMTSNTRRLNGWF 237
H V DEA + + T P R ++T+ +
Sbjct: 344 QQGAALQHPDAYALVIVDEAHALRSLGTQRAEAMRLLLTGKVPKRLVLLTATPVNNS--L 401
Query: 238 YDIFN 242
YD++N
Sbjct: 402 YDLYN 406
>gi|320590344|gb|EFX02787.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
Length = 2423
Score = 40.5 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 23/165 (13%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W RPG ++ IA + ++ + W L +
Sbjct: 1194 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRE----RIKDWGRRLAGPAGLRL 1249
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-- 200
L+ + + E + + + + R++ + V DE
Sbjct: 1250 VELTGDNTPDTRTIGEADVIVTTPEKWDGISRSWQTRG-------YVRKVSLVIIDEIHL 1302
Query: 201 -SGTPDIINKSI------LGFFTELNPNRFWI--MTSNTRRLNGW 236
+G I + I +G T + + +N L W
Sbjct: 1303 LAGDRGPILEIIVSRMNYIGAATGSSVRLLGMSTACANATDLASW 1347
>gi|294677220|ref|YP_003577835.1| terminase-like family protein [Rhodobacter capsulatus SB 1003]
gi|294476040|gb|ADE85428.1| terminase-like family protein [Rhodobacter capsulatus SB 1003]
Length = 455
Score = 40.5 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 52/297 (17%), Positives = 96/297 (32%), Gaps = 45/297 (15%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNT-LWAEVSKW 131
I GRG GKT A W+ G + + + Q+++ ++ E S
Sbjct: 62 IMGGRGAGKTRAGA---EWVRMQVEGAGPADAGPAHRVALVGETFDQVRDVMIFGE-SGI 117
Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
L+ P E ++ T + YS + P+ GP
Sbjct: 118 LACSPPDRRPEWEATK---------------RRLVWANGATAQAYSAQEPEALRGPQFD- 161
Query: 192 GMAVFNDEASGT--PDIINKSILGFF-TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
A + DE + + + +P + ++T+ R G I N P
Sbjct: 162 --AAWVDELAKWRRAEETWDMLQFALRLGKHPQQ--VITTTP-RNVGVLKAILNNPSTV- 215
Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
+ + F + +RY + + R E+ G + +E R
Sbjct: 216 VTHAPTEANRAYLAESFLAEVQARY-AGTRLGRQELEGVLLEDVEGALWTTAQLEG--LR 272
Query: 309 EAIDDLYAPLIMGCDIA---GEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
A +++ D A G G D+ +V + DW A ++++ + G P
Sbjct: 273 LASPPAMDRVVVALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRAFVLEDASVRGRP 329
>gi|170023468|ref|YP_001719973.1| hypothetical protein YPK_1222 [Yersinia pseudotuberculosis YPIII]
gi|169750002|gb|ACA67520.1| conserved hypothetical protein [Yersinia pseudotuberculosis YPIII]
Length = 534
Score = 40.5 bits (93), Expect = 0.41, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 291 QEVNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
IP +++ A+ + I D+A EG D R G +++ + W
Sbjct: 289 AAEGILIPSEWVQAAIGAHTKLGITPSGARIGALDVADEGIDLNAFSSRTGVLLDRLKAW 348
Query: 349 SAK--LIQETNQ 358
S K I T Q
Sbjct: 349 SGKGSDIYATTQ 360
>gi|312149784|gb|ADQ29854.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 304
Score = 40.5 bits (93), Expect = 0.43, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 16/157 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDHPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ +K Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
+ D ++ I D A GD T +
Sbjct: 271 ITD--------DYVFTSPIAYLDPAFSVRGDNTALCV 299
>gi|298381518|ref|ZP_06991117.1| phage terminase large subunit [Escherichia coli FVEC1302]
gi|298278960|gb|EFI20474.1| phage terminase large subunit [Escherichia coli FVEC1302]
Length = 470
Score = 40.5 bits (93), Expect = 0.45, Method: Composition-based stats.
Identities = 31/275 (11%), Positives = 76/275 (27%), Gaps = 21/275 (7%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GK+ W I ++ A ++ E+ +S R +
Sbjct: 21 KGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
+ + + + + + + + + G + +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGID-----ICWVEEAEA 122
Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
++ + W+ + L+ + P +D ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REAIDDLYAPLIM 320
+ + + R LG+ ++E A ++ ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIFKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
D + G D R G++++ I + I E
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINE 276
>gi|33863356|ref|NP_894916.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
gi|33640805|emb|CAE21260.1| similar to UvrD/REP helicase [Prochlorococcus marinus str. MIT
9313]
Length = 576
Score = 40.5 bits (93), Expect = 0.45, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 30/154 (19%)
Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
S G G GKT+ M+ ++ RPG+ I A + + A V K L +P
Sbjct: 158 SGGPGTGKTSTIVQMLARAVTLRPGLKIGLAAPTGKAARRLEEA-VRKGLETIPPPQRQA 216
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM---AVFNDE 199
+ SL P L+ G G H H + + DE
Sbjct: 217 LTSL---PCSTLHRWLQARPGGF--------------------GRHQQHPLMLDLLVIDE 253
Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
S + +++L + +M + +L
Sbjct: 254 MSMVELALMQALLNAL---PVDSQLVMIGDPDQL 284
>gi|332185581|ref|ZP_08387329.1| terminase-like family protein [Sphingomonas sp. S17]
gi|332014559|gb|EGI56616.1| terminase-like family protein [Sphingomonas sp. S17]
Length = 436
Score = 40.5 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 46/262 (17%), Positives = 85/262 (32%), Gaps = 37/262 (14%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
I AGRG GKT A + L PG I + + ++ + S L++
Sbjct: 60 IRAGRGFGKTRAGAEWVSALARDNPGARIALMGATLRDVERVMVRGESGLLAVARKGEAP 119
Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNT--HGMAVFN 197
+ S+G YS P+ G H + +
Sbjct: 120 KWIG---------------SLGQVHFTSGAIGFAYSAAAPEALRGPQHHAAWCDELGKWK 164
Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
EA G +++ LG + ++T+ R + + + RT
Sbjct: 165 GEA-GWDNLMMTLRLG------EHPRVLVTTTPRATP-----LMRKVMALPDCVETIGRT 212
Query: 258 VEG--IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
+ + F + ++S+YG D+ + R E+ G+ ++ R
Sbjct: 213 SDNAHLPDSFQDAMLSQYG-DTRLGRQELDGEMVDDREGALWTRALLDR--QRVKTVPAL 269
Query: 316 APLIMGCD-IAGEGGDKTVVVF 336
+++G D A GD +V
Sbjct: 270 DRVVVGVDPPATSSGDACGIVA 291
>gi|319762771|ref|YP_004126708.1| prophage mumc02, terminase, atpase subunit, putative
[Alicycliphilus denitrificans BC]
gi|317117332|gb|ADU99820.1| prophage MuMc02, terminase, ATPase subunit, putative
[Alicycliphilus denitrificans BC]
Length = 454
Score = 40.5 bits (93), Expect = 0.47, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 14/161 (8%)
Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRR 232
T PDT G V DE + D I K++ ++ P + S
Sbjct: 113 TALPANPDTARGFSAN----VLLDEFAFHQDSRAIWKALFPVISK--PGLKLRVISTPNG 166
Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
FYD+ + W R+ D V E + + D D+ E ++ +
Sbjct: 167 KGNKFYDLMTGADDGWSRHTTDIYQAVADGLPRNIEEL-RKGAGDDDLWAQEFELKWLDE 225
Query: 292 EVNNFIPHNYIEEA---MSREAIDDLYAPLIMGCDIAGEGG 329
++P I + + P +G DIA
Sbjct: 226 AS-AWLPFELITACEHEAAGKPEHYQGGPCFVGVDIASRND 265
>gi|301092109|ref|XP_002896227.1| N-acetyltransferase 10 [Phytophthora infestans T30-4]
gi|262094857|gb|EEY52909.1| N-acetyltransferase 10 [Phytophthora infestans T30-4]
Length = 1102
Score = 40.5 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 19/164 (11%)
Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAIS--AGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
Q ++ + V + + ++ AGRG GK+ + +I
Sbjct: 254 QARTLDQAKAIL-TFVEAVSEKTLRSTVALTAGRGRGKSAALGMSLA-GAVAYGYSNIFV 311
Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
A S LK + V K L ++ + + + + ++ ++ + +
Sbjct: 312 TAPSPENLKTV-FEFVFKGFDALKYKEHLDYEIVQSTNPEFNHAVVRVNIFREHR----- 365
Query: 173 CRTYSEERPDTFVGPHNTHGM---AVFNDEASGTPDIINKSILG 213
+T +P H+ V DEA+ P + K++LG
Sbjct: 366 -QTIQYIQPT-----HHEKLAQAELVAIDEAAAIPLPVVKNLLG 403
>gi|46949065|gb|AAT07420.1| UL89 DNA packaging protein [Macacine herpesvirus 3]
Length = 671
Score = 40.1 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNTHGMAVFNDEASGTPDI 206
+ E + + ID K T S ++ G H + DEA +
Sbjct: 261 FAKDYVVENKDFVISIDHKGAKSTALFASCYNTNSIRGQNFH-----LLLVDEAHFIKEK 315
Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
+ILGF + +I ++NT F
Sbjct: 316 AFNTILGFLAQNTTKIIFISSTNTTSDATCF 346
>gi|29366753|ref|NP_813693.1| gp33 [Streptomyces phage phiBT1]
gi|29243073|emb|CAD80101.1| gp33 [Streptomyces phage phiBT1]
Length = 527
Score = 40.1 bits (92), Expect = 0.50, Method: Composition-based stats.
Identities = 40/310 (12%), Positives = 83/310 (26%), Gaps = 20/310 (6%)
Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MS 109
WQ + + R GK+T+ A +ML+ + G
Sbjct: 54 PWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 113
Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
+I AN Q + + +K + + Y + + + D+
Sbjct: 114 VIAAANDRNQARMVF--DSAKQMVNASPKLAAVCNVQRDVIR--YKDNTYRVVSADAGRQ 169
Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
F + A + I + + +
Sbjct: 170 QGLNPAAVSLDEYAFSKSSDLFDALTLGSAARN--QPMFLIISTAGPDPDGPFAALCEQG 227
Query: 230 TRRLNGW------FYDIFNIPLEDWKRY---QIDTRTVEGIDSGFHEGIISRYGLDSDV- 279
R +G FY + L + + ++ R D + + ++
Sbjct: 228 ERVNSGEADDPTLFYRSWGPKLGETVDHLDPEVWARCNPSYDILNPDDFKAAAQRSTEAS 287
Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR-R 338
RI L QF + + A + + ++ G D + +G +V R R
Sbjct: 288 FRIYRLSQFVRGASTWLPHGLWDSLAADDDDPLEPGDEVVCGFDGSWKGDSTALVACRVR 347
Query: 339 GNIIEHIFDW 348
+ + W
Sbjct: 348 DLRVFVLGHW 357
>gi|84687436|ref|ZP_01015314.1| Putative large terminase [Maritimibacter alkaliphilus HTCC2654]
gi|84664594|gb|EAQ11080.1| Putative large terminase [Rhodobacterales bacterium HTCC2654]
Length = 426
Score = 40.1 bits (92), Expect = 0.53, Method: Composition-based stats.
Identities = 45/272 (16%), Positives = 79/272 (29%), Gaps = 47/272 (17%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNTLWAEVSKWL 132
I GRG GKT A W+ + G + I + Q+++ +
Sbjct: 33 ILGGRGAGKTRAGA---EWVRAQVEGPAPLSPGRAGRVALIGETFDQVRDVMV------- 82
Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
F + E + T ++S P+ GP
Sbjct: 83 --------FGDSGIVACAPPDRRPAWEATKRRLVWPNGATATSFSASEPEGLRGPQFD-- 132
Query: 193 MAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
A + DE + D + L + ++T+ R + I L
Sbjct: 133 -AAWADELAKWKKVDDAWDMLQFAL-RLGDHPRQVVTTTPRDVP-----ILRRLLTLSST 185
Query: 251 YQIDTRTV---EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
T + F E I +RYG + + R E+ G F +E+
Sbjct: 186 VTTHAPTTANRANLAKSFLEEIEARYG-GTRLGRQELEGVLLDDREGAFWSTAMLEDC-- 242
Query: 308 REAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
R + +++ D G D+ +V
Sbjct: 243 RIDGPPPLSRIVVAVDPPVTGHAGSDECGIVV 274
>gi|154488071|ref|ZP_02029188.1| hypothetical protein BIFADO_01641 [Bifidobacterium adolescentis
L2-32]
gi|154083544|gb|EDN82589.1| hypothetical protein BIFADO_01641 [Bifidobacterium adolescentis
L2-32]
Length = 477
Score = 40.1 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 66/231 (28%), Gaps = 28/231 (12%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSI 110
WQ + V + + A+ + R GKT W+ + + PGM I
Sbjct: 37 DPWQRQINRIVLA-----KSADGFWSARNAVLSIPRQTGKTYDIGWVAIHRAARTPGMRI 91
Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
+ A + +K+T S+ EM L G + + G + +
Sbjct: 92 VWTAQHFSVIKDTFE-------SLCAIVLRPEMSGLVDPDHG-----ISLAAGKEEIRFR 139
Query: 171 ITCRTYSEERPD-TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTS 228
R + R G + DEA D S+L NP ++ T
Sbjct: 140 NGSRIFFRARERGALRGV--KKIALLVIDEAQHLSDSAMASMLPTQNRAYNPQTIYMGTP 197
Query: 229 N-TRRLNGWFYDIFNIPLEDWKRYQI-----DTRTVEGIDSGFHEGIISRY 273
R F + + + R + +D Y
Sbjct: 198 PGPRDNGEAFTRLRDKARAGRTHSTLYVEFAADRDADPLDREQWRKANPSY 248
>gi|308097723|gb|ADO14402.1| AB1gp31 [Acinetobacter phage AB1]
Length = 313
Score = 40.1 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMS--R 308
I+ + + I + D I P+ + + + I +++E A+ +
Sbjct: 21 HINYNENPFLSQTALDVIADKKRRD-PEGFAHIYDGMPRADDDMSIIKASWVEAALDAHK 79
Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
D +G D+A G DK +V R+G + +W A+
Sbjct: 80 LLNLDDTGRSYLGFDVADAGKDKCALVHRKGIVAYWSDEWKARE 123
>gi|158425199|ref|YP_001526491.1| phage-related DNA maturase [Azorhizobium caulinodans ORS 571]
gi|158332088|dbj|BAF89573.1| phage-related DNA maturase [Azorhizobium caulinodans ORS 571]
Length = 569
Score = 40.1 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
++ST + L+ F+NF+ W G P P Q + +
Sbjct: 1 MVSTKEHLKSSTR-FTDPDPLKADFRNFLYVV--WKHLGLP-----DPTPIQYD----IA 48
Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
V+ S F+ G+GK+ + + + WL+ P I+ ++ S+
Sbjct: 49 VYLQHGPKRSIIEAFR-------GVGKSWVTSAFVCWLLYCNPDHKILVVSASK 95
>gi|116196286|ref|XP_001223955.1| hypothetical protein CHGG_04741 [Chaetomium globosum CBS 148.51]
gi|88180654|gb|EAQ88122.1| hypothetical protein CHGG_04741 [Chaetomium globosum CBS 148.51]
Length = 2013
Score = 40.1 bits (92), Expect = 0.62, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 23/165 (13%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W RPG ++ IA + ++ V W + L ++
Sbjct: 1169 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRE----RVKDWGARLAKPLGLKL 1224
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-- 200
L+ + + + + I + + R++ + V DE
Sbjct: 1225 VELTGDNTPDTRTIQDADIIITTPEKWDGISRSWQTRG-------YVRKVSLVIIDEIHL 1277
Query: 201 -SGTPDIINKSILG-----FFTELNPNRFWIM---TSNTRRLNGW 236
+G I + I+ + N R M +N L W
Sbjct: 1278 LAGDRGPILEIIVSRMNYIASSTKNAVRLLGMSTACANATDLGNW 1322
>gi|83943173|ref|ZP_00955633.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36]
gi|83846181|gb|EAP84058.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36]
Length = 408
Score = 39.7 bits (91), Expect = 0.66, Method: Composition-based stats.
Identities = 47/269 (17%), Positives = 83/269 (30%), Gaps = 41/269 (15%)
Query: 82 ISAGRGIGKTTLNA-WMMLWLISTRPG-----MSIICIANSETQLKNTLWAEVSKWLSML 135
I GRG GKT A W+ + +RP + + + Q++ + S L+
Sbjct: 16 IMGGRGAGKTRAGAEWVRAQVEGSRPLDAGRCRRVALVGETIEQVREVMIFGDSGILACS 75
Query: 136 P--HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
P R +E L ++ P+ GP
Sbjct: 76 PADRRPDWEATRKRL-----------------VWPNGAVATVHTAHDPEGLRGPQFD--- 115
Query: 194 AVFNDEAS--GTPDIINKSILGFF-TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
A + DE + + + +P + + T R G ++ P
Sbjct: 116 AAWVDELAKWKKAEETWDQLQFALRLGEDPR---VCVTTTPRNVGVLKNLLASPSTV-TT 171
Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
+ + F E + +RY + + R E+ G IE R+
Sbjct: 172 HAPTEANAANLAGSFLEEVRARY-RGTRLGRQELDGVLLADAEGALWTSERIEAGRVRDV 230
Query: 311 IDDLYAPLIMGCDI---AGEGGDKTVVVF 336
L +++G D AG G D+ +V
Sbjct: 231 --PLLDRIVVGLDPATTAGAGSDECGIVV 257
>gi|221148414|gb|ACL99813.1| BDRF1 [Human herpesvirus 4]
Length = 690
Score = 39.7 bits (91), Expect = 0.67, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 15/149 (10%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GKT + ++ ++S + I +A+ + + + ++ E+ L+ E+ +
Sbjct: 231 GKTWIVVAIISLILSNLSNVQIGYVAHQKH-VASAVFTEIIDTLTKSFDSKRVEVNKETS 289
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
+ ++ + T+ C T + H +F DEA+
Sbjct: 290 TITFRHSGKISS---------TVMCATCFNKNSIRGQTFH-----LLFVDEANFIKKEAL 335
Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWF 237
+ILGF + + +I + N+ F
Sbjct: 336 PAILGFMLQKDAKIIFISSVNSADQATSF 364
>gi|219873383|ref|YP_002477648.1| phage terminase, large subunit, pbsx family [Borrelia garinii
Far04]
gi|219694616|gb|ACL35135.1| phage terminase, large subunit, pbsx family [Borrelia garinii
Far04]
Length = 267
Score = 39.7 bits (91), Expect = 0.67, Method: Composition-based stats.
Identities = 35/243 (14%), Positives = 72/243 (29%), Gaps = 38/243 (15%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP- 106
Q E + ++ H K S G GKT L +++++ + S
Sbjct: 46 TAKQKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEK 95
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
+ I NS L ++ K + + + ++ + I
Sbjct: 96 DTNNFIIGNSIGLLMTNTIKQIEK------ICGFLGIDYQKKKSGESFCKIAGLELNIYG 149
Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
D+F + ++ +EA+ +++L L + I+
Sbjct: 150 GK-----------NRDSFSKIRGGNSAIIYVNEATVIHK---ETLLEAIKRLRKGKAIII 195
Query: 227 T-SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
+N +F F + +K Y T + F E Y + +L
Sbjct: 196 FDTNPESPTHFFKTDFIENKDVFKTYNFTTYDNPLNSADFIETQKKLY-KHLPAYKARVL 254
Query: 286 -GQ 287
G+
Sbjct: 255 YGE 257
>gi|123845631|sp|Q3KSR3|TRM3_EBVG RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
Full=DNA-packaging protein BGRF1/BDRF1; AltName:
Full=Terminase large subunit
gi|64173286|gb|AAY41136.1| probable DNA packaging protein [Human herpesvirus 4]
Length = 690
Score = 39.7 bits (91), Expect = 0.67, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 15/149 (10%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GKT + ++ ++S + I +A+ + + + ++ E+ L+ E+ +
Sbjct: 231 GKTWIVVAIISLILSNLSNVQIGYVAHQKH-VASAVFTEIIDTLTKSFDSKRVEVNKETS 289
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
+ ++ + T+ C T + H +F DEA+
Sbjct: 290 TITFRHSGKISS---------TVMCATCFNKNSIRGQTFH-----LLFVDEANFIKKEAL 335
Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWF 237
+ILGF + + +I + N+ F
Sbjct: 336 PAILGFMLQKDAKIIFISSVNSADQATSF 364
>gi|82503246|ref|YP_401690.1| BGRF1/BDRF1 [Human herpesvirus 4]
gi|139424519|ref|YP_001129485.1| BGRF1/BDRF1 [Human herpesvirus 4 type 2]
gi|267408|sp|P03219|TRM3_EBVB9 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
Full=DNA-packaging protein BGRF1/BDRF1; AltName:
Full=Terminase large subunit
gi|254784086|sp|P0C744|TRM3_EBVA8 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
Full=DNA-packaging protein BGRF1/BDRF1; AltName:
Full=Terminase large subunit
gi|1632798|emb|CAA24834.1| probable DNA packaging protein [Human herpesvirus 4]
gi|23893636|emb|CAD53440.1| BGRF1-BDRF1 protein [Human herpesvirus 4]
gi|82703995|gb|ABB89264.1| BGRF1/BDRF1 [Human herpesvirus 4]
Length = 690
Score = 39.7 bits (91), Expect = 0.67, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 15/149 (10%)
Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
GKT + ++ ++S + I +A+ + + + ++ E+ L+ E+ +
Sbjct: 231 GKTWIVVAIISLILSNLSNVQIGYVAHQKH-VASAVFTEIIDTLTKSFDSKRVEVNKETS 289
Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
+ ++ + T+ C T + H +F DEA+
Sbjct: 290 TITFRHSGKISS---------TVMCATCFNKNSIRGQTFH-----LLFVDEANFIKKEAL 335
Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWF 237
+ILGF + + +I + N+ F
Sbjct: 336 PAILGFMLQKDAKIIFISSVNSADQATSF 364
>gi|29826542|ref|NP_821176.1| hypothetical protein SAV_2 [Streptomyces avermitilis MA-4680]
gi|29603638|dbj|BAC67711.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 77
Score = 39.7 bits (91), Expect = 0.69, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
P + I + G GKT++ A ++ P I+ + L
Sbjct: 2 PPQGARGTIVSATGSGKTSMAAAST---LNCFPEGRILVTVPTLDLL 45
>gi|15618661|ref|NP_224947.1| exodeoxyribonuclease V, Alpha [Chlamydophila pneumoniae CWL029]
gi|4377059|gb|AAD18890.1| Exodeoxyribonuclease V, Alpha [Chlamydophila pneumoniae CWL029]
Length = 493
Score = 39.7 bits (91), Expect = 0.70, Method: Composition-based stats.
Identities = 34/214 (15%), Positives = 70/214 (32%), Gaps = 28/214 (13%)
Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE-- 117
++ + + N +S G G GKT L A ++L L+ +P + I ++ +
Sbjct: 130 SSILSEEQNFIFNKITQGCFSIVSGGPGTGKTFLAAQLILSLVKQQPKLRIAIVSPTGKA 189
Query: 118 -TQLKNTLWAE-VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
+ ++ L + + ++ H F + + L+++ + +T
Sbjct: 190 TSHIRQILMKYNIFDDMVLMQTVHHFLQEYAYRRYNSIDVLLVDEGSMVTFDLLYSLVQT 249
Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLN 234
G + +S ILG +L P I N + L
Sbjct: 250 --------LQGYEKDKKLYT----SSLI-------ILGDTNQLPP--IGIGVGNPLQDLI 288
Query: 235 GWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFH 266
G+F++ F K +D T +
Sbjct: 289 GYFHENTFFLKTSHRAKTGVVDQLTQSVLRGEMI 322
>gi|15836285|ref|NP_300809.1| exodeoxyribonuclease V, alpha [Chlamydophila pneumoniae J138]
gi|16752288|ref|NP_445657.1| exodeoxyribonuclease V, alpha subunit, putative [Chlamydophila
pneumoniae AR39]
gi|33242111|ref|NP_877052.1| exonuclease V alpha-subunit [Chlamydophila pneumoniae TW-183]
gi|7190033|gb|AAF38887.1| exodeoxyribonuclease V, alpha subunit, putative [Chlamydophila
pneumoniae AR39]
gi|8979125|dbj|BAA98960.1| exodeoxyribonuclease V, alpha [Chlamydophila pneumoniae J138]
gi|33236621|gb|AAP98709.1| exonuclease V alpha-subunit [Chlamydophila pneumoniae TW-183]
Length = 493
Score = 39.7 bits (91), Expect = 0.70, Method: Composition-based stats.
Identities = 34/214 (15%), Positives = 70/214 (32%), Gaps = 28/214 (13%)
Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE-- 117
++ + + N +S G G GKT L A ++L L+ +P + I ++ +
Sbjct: 130 SSILSEEQNFIFNKITQGCFSIVSGGPGTGKTFLAAQLILSLVKQQPKLRIAIVSPTGKA 189
Query: 118 -TQLKNTLWAE-VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
+ ++ L + + ++ H F + + L+++ + +T
Sbjct: 190 TSHIRQILMKYNIFDDMVLMQTVHHFLQEYAYRRYNSIDVLLVDEGSMVTFDLLYSLVQT 249
Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLN 234
G + +S ILG +L P I N + L
Sbjct: 250 --------LQGYEKDKKLYT----SSLI-------ILGDTNQLPP--IGIGVGNPLQDLI 288
Query: 235 GWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFH 266
G+F++ F K +D T +
Sbjct: 289 GYFHENTFFLKTSHRAKTGVVDQLTQSVLRGEMI 322
>gi|308178069|ref|YP_003917475.1| type I restriction-modification system restriction subunit
[Arthrobacter arilaitensis Re117]
gi|307745532|emb|CBT76504.1| type I restriction-modification system restriction subunit
[Arthrobacter arilaitensis Re117]
Length = 1033
Score = 39.7 bits (91), Expect = 0.70, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 14/146 (9%)
Query: 66 CHSNVNNSNPTIFKCAISAG------RGIGKTTLNAWMMLWLISTRPGMSI-ICIANSE- 117
H+ + A G +G GK+ W+ W++ T+ + + +E
Sbjct: 248 RHNQYFGVQAAQDRIAKREGGIIWHTQGSGKSLTMVWLAKWILETQHDARVLVITDRTEL 307
Query: 118 -TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP--SGWYAELLEQSMGIDSKHYTITCR 174
Q+++ K + M + S P + + G K
Sbjct: 308 DGQIEDGFSGVGEKIVRTQSGADMLAMLNTSNPPLMCSLVHKFRGTNDGARDKDAEDFAN 367
Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEA 200
+ P G + VF DEA
Sbjct: 368 ELKTQIP---AGYTAKGNIFVFVDEA 390
>gi|281355726|ref|ZP_06242220.1| exodeoxyribonuclease V, alpha subunit [Victivallis vadensis ATCC
BAA-548]
gi|281318606|gb|EFB02626.1| exodeoxyribonuclease V, alpha subunit [Victivallis vadensis ATCC
BAA-548]
Length = 635
Score = 39.7 bits (91), Expect = 0.72, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 28/158 (17%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS-ETQLKNTLWAEVSKWLSMLPHR 138
IS G G GKTT+ A ++ + P + + A + + Q + L
Sbjct: 187 TVISGGPGTGKTTVVAALLALEFARAPELRVALCAPTGKAQAR----------LGEALRE 236
Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM---AV 195
++ +LE + + T+ + H + + V
Sbjct: 237 DGLKI----GTAEAIRRRILELAPSTIDRLIGSAPLTHRTK-------YHAGNPLPFDLV 285
Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
DE+S + ++ P I+ + +L
Sbjct: 286 IVDESSMVSLPLMARLMQAL---APETRLILLGDPNQL 320
>gi|124022672|ref|YP_001016979.1| exodeoxyribonuclease V 67 kD polypeptide [Prochlorococcus marinus
str. MIT 9303]
gi|123962958|gb|ABM77714.1| possible exodeoxyribonuclease V 67 kD polypeptide [Prochlorococcus
marinus str. MIT 9303]
Length = 576
Score = 39.7 bits (91), Expect = 0.75, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 42/182 (23%)
Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
Q +EA+D H +S G G GKT+ M+ ++ RPG+ I A
Sbjct: 142 QQAAVEAIDNH------------GVVLLSGGPGTGKTSTIVQMLARAVTLRPGLRIGLAA 189
Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
+ + A V K L +P + Q+L+ P L+ G
Sbjct: 190 PTGKAARRLEEA-VRKGLEAIP---PTQRQALTSLPCSTLHRWLQARPGGF--------- 236
Query: 175 TYSEERPDTFVGPHNTHGM---AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
G H H + + DE S + +++L + +M +
Sbjct: 237 -----------GRHQQHPLMLDLLVIDEMSMVELSLMQALLSAL---PIDSQLVMIGDPD 282
Query: 232 RL 233
+L
Sbjct: 283 QL 284
>gi|124009888|ref|ZP_01694555.1| hypothetical protein M23134_06477 [Microscilla marina ATCC 23134]
gi|123984124|gb|EAY24490.1| hypothetical protein M23134_06477 [Microscilla marina ATCC 23134]
Length = 539
Score = 39.7 bits (91), Expect = 0.82, Method: Composition-based stats.
Identities = 46/262 (17%), Positives = 77/262 (29%), Gaps = 32/262 (12%)
Query: 84 AGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
AG+G GKT A ++ + + T PG+ AN++ QL ++ V L + E
Sbjct: 36 AGQGAGKTH-GAGLISFRLITNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDE 94
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFN 197
+ G G K Y ++ + +
Sbjct: 95 YLGQGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAIL 154
Query: 198 DEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD---------------IF 241
DE T + + + ILG + ++ T+ L YD IF
Sbjct: 155 DETKDTREEAVQEVILGRLRQQG----LYISEATQALTSEEYDEGSPVVANLPFNPLYIF 210
Query: 242 NIPLED-WKRYQIDTRTVEGIDSGFH----EGIISRYGLDSDVARIEILGQFPQQEVNNF 296
P + W + E + + G DS I + +N+
Sbjct: 211 TSPAKVPWINDWFELSEYEEEIKAKIYNPPQYFKKKVGGDSKFVVISATHLNLKNLPSNY 270
Query: 297 IPHNYIEEAMSREAIDDLYAPL 318
I A R + PL
Sbjct: 271 IEKQEANLASHRHGMLIYGDPL 292
>gi|269302541|gb|ACZ32641.1| putative exodeoxyribonuclease V, alpha subunit [Chlamydophila
pneumoniae LPCoLN]
Length = 493
Score = 39.3 bits (90), Expect = 0.84, Method: Composition-based stats.
Identities = 34/214 (15%), Positives = 70/214 (32%), Gaps = 28/214 (13%)
Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE-- 117
++ + + N +S G G GKT L A ++L L+ +P + I ++ +
Sbjct: 130 SSILSEEQNFIFNKITQGCFSIVSGGPGTGKTFLAAQLILSLVKQQPKLRIAIVSPTGKA 189
Query: 118 -TQLKNTLWAE-VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
+ ++ L + + ++ H F + + L+++ + +T
Sbjct: 190 TSHIRQILMKYNIFDDMVLMQTVHHFLQEYAYRRYNSIDVLLVDEGSMVTFDLLYSLVQT 249
Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLN 234
G + +S ILG +L P I N + L
Sbjct: 250 --------LQGYEKDKKLYT----SSLI-------ILGDTNQLPP--IGIGVGNPLQDLI 288
Query: 235 GWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFH 266
G+F++ F K +D T +
Sbjct: 289 GYFHENTFFLKTSHRAKTGAVDQLTQSVLRGEMI 322
>gi|302412431|ref|XP_003004048.1| ATP-dependent DNA helicase MER3 [Verticillium albo-atrum VaMs.102]
gi|261356624|gb|EEY19052.1| ATP-dependent DNA helicase MER3 [Verticillium albo-atrum VaMs.102]
Length = 709
Score = 39.3 bits (90), Expect = 0.84, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 21/170 (12%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W RPG ++ IA + ++ V W + L ++
Sbjct: 279 SPTGSGKTVAAELAMWWAFKERPGSKVVYIAPMKALVRE----RVKDWGARLAKPLGLKL 334
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-- 200
L+ + + + + I + + R++ + V DE
Sbjct: 335 VELTGDNTPDTRTIKDADVIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDEIHL 387
Query: 201 -SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDW 248
+G I + I+ N T N+ RL G N L +W
Sbjct: 388 LAGDRGPILEIIVSRM-----NYIAASTKNSVRLLGMSTACANASDLGNW 432
>gi|290960848|ref|YP_003492030.1| phage terminase large subunit [Streptomyces scabiei 87.22]
gi|260650374|emb|CBG73490.1| phage terminase (large subunit) [Streptomyces scabiei 87.22]
Length = 598
Score = 39.3 bits (90), Expect = 0.86, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 29/203 (14%)
Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA---ISAGRGIGKTTLNAWMMLWLIS--TR 105
P WQ+ ++ A +++ + + R GK+TL+ + ++L
Sbjct: 101 PDPWQVAWIIAPVFGWVRFDADADMYVRIITDLYVDVPRKNGKSTLSGGLAIYLTCADGE 160
Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
PG +I A ++ Q ++ + + P +L H + +++ G
Sbjct: 161 PGAQVIAAATTKQQ-AGYVFTPIRQLAERAP--------ALKGHVKPYRGKIIHPKSGSY 211
Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFW 224
+ H + DE D + I T R
Sbjct: 212 FEVIASVADA-----------QHGANLHGAVIDELHVHKDPEMVEVIE---TGTGSRRQP 257
Query: 225 IMTSNTRRLNGWFYDIFNIPLED 247
++ T +G I+N
Sbjct: 258 LIVIITTADSGKPETIYNRKRTR 280
>gi|168029927|ref|XP_001767476.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681372|gb|EDQ67800.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1075
Score = 39.3 bits (90), Expect = 0.86, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 10/134 (7%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
A++A RG GK+ + +I A S LK L+ + K + ++
Sbjct: 279 VALTAARGRGKSAALGVAIA-GAVAFGYSNIFVTAPSPENLKT-LFEFIFKGFDAMEYKE 336
Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
+ + S + ++ + I +H ++ + DE
Sbjct: 337 HIDYDLVESTNSAFNKAIV--RVNIFRQHRQTIQYIQPKDHEKLAQAE------LLVIDE 388
Query: 200 ASGTPDIINKSILG 213
A+ P I K++LG
Sbjct: 389 AAAIPLPIVKALLG 402
>gi|310792137|gb|EFQ27664.1| Sec63 Brl domain-containing protein [Glomerella graminicola M1.001]
Length = 1974
Score = 39.3 bits (90), Expect = 0.92, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 15/132 (11%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W RPG ++ IA + ++ V W + L ++
Sbjct: 1153 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRE----RVKDWGARLARPLGLKL 1208
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-- 200
L+ + + + + I + + R++ + V DE
Sbjct: 1209 VELTGDNTPDTRTIKDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDEIHL 1261
Query: 201 -SGTPDIINKSI 211
+G I + I
Sbjct: 1262 LAGDRGPILEII 1273
>gi|154500994|ref|ZP_02039032.1| hypothetical protein BACCAP_04681 [Bacteroides capillosus ATCC
29799]
gi|150270018|gb|EDM97537.1| hypothetical protein BACCAP_04681 [Bacteroides capillosus ATCC
29799]
Length = 726
Score = 39.3 bits (90), Expect = 0.92, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
+ + R Q E M + + T C IS G G GK ++ ++
Sbjct: 313 DLDDEIDRQQAE-MGFTFAQEQRHAIRTALTSPICIISGGPGTGKASIQRAILNIYKKVF 371
Query: 106 PGMSIICIANSET 118
P ++C A +
Sbjct: 372 PDSDVVCCAPTGR 384
>gi|254425155|ref|ZP_05038873.1| cyclic peptide transporter subfamily [Synechococcus sp. PCC 7335]
gi|196192644|gb|EDX87608.1| cyclic peptide transporter subfamily [Synechococcus sp. PCC 7335]
Length = 546
Score = 39.3 bits (90), Expect = 0.94, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 14/141 (9%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS---------ETQLKNTLWAEVSKWL 132
I G G GK+TL + I P + + N QL +T++++ +
Sbjct: 360 IVGGNGSGKSTLAKLITSLYI---PDSGQLILDNEPITDINREWYRQLFSTVFSDYYLFE 416
Query: 133 SMLPHRHWFEMQSLSLHPSGWYAEL--LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
++ + + Y E LE+ + I + + T + + + + +
Sbjct: 417 RLVSTEETSLEEVTPRSTAQNYLEKLQLEEKVSIQNGQLSTTALSQGQRKRLALLAAYLE 476
Query: 191 HGMAVFNDEASGTPDIINKSI 211
DE + D + + I
Sbjct: 477 DRSLYLFDEWAADQDPVFREI 497
>gi|85702762|ref|ZP_01033866.1| Putative large terminase [Roseovarius sp. 217]
gi|85671690|gb|EAQ26547.1| Putative large terminase [Roseovarius sp. 217]
Length = 419
Score = 39.3 bits (90), Expect = 0.97, Method: Composition-based stats.
Identities = 47/285 (16%), Positives = 86/285 (30%), Gaps = 43/285 (15%)
Query: 82 ISAGRGIGKTTLNA-WMMLWLISTRPG-----MSIICIANSETQLKNT-LWAEVSKWLSM 134
I GRG GKT A W+ + +RP I + + Q++ ++ E S ++
Sbjct: 27 IMGGRGAGKTRAGAEWVRAQVEGSRPLDEGRCKRIALVGETIDQVREVMVFGE-SGIMAC 85
Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
P + Q+ + YS P+ GP
Sbjct: 86 SPPDRRPDWQATR---------------KRLIWPNGAVAQAYSAHDPEALRGPQFDGA-- 128
Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
+ DE + + + R + T T R G DI +P
Sbjct: 129 -WVDELAKWKRARETWDMLQFGLRLGDAPRVCVTT--TPRNVGVLKDIVAVP----STVV 181
Query: 253 IDTRTVEG---IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
T + F + + +RY + + R E+ G + + +E A R
Sbjct: 182 TSAPTEANRAYLAESFLDEVRARY-AGTRLGRQELDGLLIDEAEDALWTPAMLEAA--RV 238
Query: 310 AIDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAK 351
+ +++ D G D+ ++ + DW
Sbjct: 239 ESLPEFDRVVVAVDPPVTGHAGSDECGIIMAGAITRGPVQDWRVW 283
>gi|225683146|gb|EEH21430.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
brasiliensis Pb03]
Length = 2011
Score = 39.3 bits (90), Expect = 0.99, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W RPG ++ IA + ++ V W L ++
Sbjct: 1163 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRE----RVHDWKRRLTVPMGLKL 1218
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
L+ + + + + I + + R++ + V DE
Sbjct: 1219 VELTGDNTPDTKTIRDSDIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1268
>gi|296129166|ref|YP_003636416.1| type III restriction protein res subunit [Cellulomonas flavigena
DSM 20109]
gi|296020981|gb|ADG74217.1| type III restriction protein res subunit [Cellulomonas flavigena
DSM 20109]
Length = 601
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 31/202 (15%), Positives = 55/202 (27%), Gaps = 47/202 (23%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG G WQ E +E P F A++ G GKTT
Sbjct: 34 PWGAAGSL-------RAWQAEAIELYRQ--------RGPRDF-LAVATP-GAGKTTFALR 76
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ L+ + + +A +E + K + R + + G +
Sbjct: 77 IATELLEAKVVRRVTVVAPTEH---------LKKQWADAAARVGIRLDPRFSNAQGRHGA 127
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE------ASGTPDIINKS 210
+ ++ + + + V DE A D + ++
Sbjct: 128 GYDGVAVTYAQVASKPALHAARTTAER---------TLVILDEVHHGGDALSWGDAVREA 178
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
G R +T R
Sbjct: 179 FEGA------TRRLALTGTPFR 194
>gi|226288385|gb|EEH43897.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
brasiliensis Pb18]
Length = 2011
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W RPG ++ IA + ++ V W L ++
Sbjct: 1163 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRE----RVHDWKRRLTVPMGLKL 1218
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
L+ + + + + I + + R++ + V DE
Sbjct: 1219 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1268
>gi|295672069|ref|XP_002796581.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
brasiliensis Pb01]
gi|226283561|gb|EEH39127.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
brasiliensis Pb01]
Length = 2012
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W RPG ++ IA + ++ V W L ++
Sbjct: 1163 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRE----RVHDWKRRLTVPMGLKL 1218
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
L+ + + + + I + + R++ + V DE
Sbjct: 1219 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1268
>gi|291517493|emb|CBK71109.1| Phage terminase large subunit [Bifidobacterium longum subsp. longum
F8]
Length = 477
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 26/230 (11%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
WQ + + ++ T+ R GKT W+ + + PGM I+
Sbjct: 37 DVWQRQINRIILAKSADGFWSARNTVLSI----PRQTGKTYDIGWVAIHRAARTPGMRIV 92
Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
A + +K+T S+ EM L G + + G + +
Sbjct: 93 WTAQHFSVIKDTFE-------SLCAIVLRPEMSGLVDPDHG-----ISLAAGKEEIRFRN 140
Query: 172 TCRTYSEERPD-TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTSN 229
R + R G + DEA D S+L NP ++ T
Sbjct: 141 GSRIFFRARERGALRGV--KKIALLVIDEAQHLSDSAMASMLPTQNRAYNPQTIYMGTPP 198
Query: 230 -TRRLNGWFYDIFNIPLEDWKRYQI-----DTRTVEGIDSGFHEGIISRY 273
R F + + + R + +D Y
Sbjct: 199 GPRDNGEAFTRLRDKTRAGRTHSTLYVEFAADRDADPLDREQWRKANPSY 248
>gi|108797804|ref|YP_638001.1| hypothetical protein Mmcs_0827 [Mycobacterium sp. MCS]
gi|119866897|ref|YP_936849.1| hypothetical protein Mkms_0844 [Mycobacterium sp. KMS]
gi|108768223|gb|ABG06945.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119692986|gb|ABL90059.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length = 563
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 17/189 (8%)
Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
+ +A+ H + + ++ + + + G G GKT L A ++ R G + +
Sbjct: 212 EDAADALTEH-QAIILDAIRLLNRVEVRGGAGSGKTFL-AMEQARRLAQR-GQRVALVCY 268
Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
S L + L W + E +L + + +
Sbjct: 269 SHG-LASYLERICETWPRRQQPAYVGEFHALGVQWGAPEGPDEALRTEETVRFWEHDLPL 327
Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-----------TELNPNRFW 224
+ + H + DEA D +L T+ F
Sbjct: 328 HMADLAAQLEPGHRFDS--IVVDEAQDFADAWWDPLLAALRDPVDGGLYVFTDEGQRVFN 385
Query: 225 IMTSNTRRL 233
+ S L
Sbjct: 386 RVGSPPVPL 394
>gi|273810556|ref|YP_003344937.1| gp2 [Sodalis phage SO-1]
gi|258619841|gb|ACV84094.1| gp2 [Sodalis phage SO-1]
Length = 461
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 44/246 (17%), Positives = 82/246 (33%), Gaps = 29/246 (11%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+G G GK+ + A ++ L++ PG I + L ++ E+ K R F
Sbjct: 58 SGFGGGKSWVAARKVIQLLTLNPGHDGIVTEPTIPLLVKIMYPELEKAFDEAGFRWKFNK 117
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
Q S+ + K + C S E +G + + DE T
Sbjct: 118 QDKIY------------SVLVKGKWTRVICE--SMENYTRLIGVNAA---WIVADEFDTT 160
Query: 204 PDIINKSILGFFTE---LNPNRFWIMTSNTRRLNGW--FYDIFNIPLE-DWKRYQIDTRT 257
+ + R +++ S G+ Y IF + + + + T
Sbjct: 161 KQDVALAAYHKLLGRLRAGFVRQFVIVSTP---EGYRAMYQIFEVEKDSQKRLIRAKTTD 217
Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
+ + F + + S+Y +++ + G F EE S E +
Sbjct: 218 NHHLPADFIDTLRSQY--PANLIDAYLNGLFVNLTSGAVYKMFNREENASTEEVQ-PEDT 274
Query: 318 LIMGCD 323
LI+G D
Sbjct: 275 LIIGMD 280
>gi|295688413|ref|YP_003592106.1| hypothetical protein Cseg_0983 [Caulobacter segnis ATCC 21756]
gi|295430316|gb|ADG09488.1| protein of unknown function DUF264 [Caulobacter segnis ATCC 21756]
Length = 445
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 51/273 (18%), Positives = 83/273 (30%), Gaps = 40/273 (14%)
Query: 84 AGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
GRG GKT A WLI G + + + ++ +
Sbjct: 77 GGRGAGKTYAGAA---WLIEQATAGARLALVGPTFHDVREVM------------IEGPSG 121
Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNTHGMAVFNDEA 200
+++LSL E + + T +S E PD+ G H + DE
Sbjct: 122 LKALSLPDEHPRWEASRRRL---VWPNGATAYAFSAEDPDSLRGPQFHAA-----WADEF 173
Query: 201 SGTPDIINKSIL---GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
P + + G +P T R +
Sbjct: 174 CAWPKPGDTLAMLRFGLRLGADPRLVVTTTPKPHRALKVLM----AEPGVSLTRAGTSAN 229
Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
+ F + S YG + +A E+ G + + F + +R A D
Sbjct: 230 AGNLAPAFLRTLESLYG-GTRLAAQELDGVIVETDGGLFRAEDLARCRAARPARLDR--- 285
Query: 318 LIMGCD-IAGEGGDKT--VVVFRRGNIIEHIFD 347
+++ D A GGD VVV RR + + D
Sbjct: 286 VVVAVDPPATAGGDACGIVVVGRRDDRAFVLAD 318
>gi|148241989|ref|YP_001227146.1| hypothetical protein SynRCC307_0890 [Synechococcus sp. RCC307]
gi|147850299|emb|CAK27793.1| Hypothetical protein SynRCC307_0890 [Synechococcus sp. RCC307]
Length = 98
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 82 ISAGRGIGKTTL--NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
+ +GR GKT L A + L T+PG + +A S Q K+ WA++
Sbjct: 25 VFSGRRFGKTRLMLTAGVEL--CLTKPGAKVFHLAPSRKQAKDIAWADLK 72
>gi|145225752|ref|YP_001136430.1| hypothetical protein Mflv_5176 [Mycobacterium gilvum PYR-GCK]
gi|145218238|gb|ABP47642.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length = 551
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 27/181 (14%), Positives = 50/181 (27%), Gaps = 5/181 (2%)
Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
E V S + ++ + + I G G GKT L L ++++C +
Sbjct: 199 EDAADVLTEQQSVILDAIKLLHRVEIRGGAGSGKTFLAMEQARRLARAGRRVALVCYS-- 256
Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
L + L + W + E L K + +
Sbjct: 257 -HGLASYLERITATWNRRHRPAYVGEFHDLGKQWGAPAGPDESVRNDETVKFWEHDLPSQ 315
Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
H A+ DEA D +L + ++ + +R+
Sbjct: 316 MTRLATQLDPGHRFD--AIVVDEAQDFADAWWDPLLAALKDDETGGLYLFSDEGQRVFDR 373
Query: 237 F 237
F
Sbjct: 374 F 374
>gi|124005744|ref|ZP_01690583.1| hypothetical protein M23134_03970 [Microscilla marina ATCC 23134]
gi|123988812|gb|EAY28418.1| hypothetical protein M23134_03970 [Microscilla marina ATCC 23134]
Length = 535
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 6/142 (4%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
AG+G GKT + LIS PG+ AN++ QL ++ V L + E
Sbjct: 33 AGQGAGKTHGAGLISFRLISNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDEH 92
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFND 198
+ G G K Y ++ + + D
Sbjct: 93 TGEGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAILD 152
Query: 199 EASGT-PDIINKSILGFFTELN 219
E T + + + ILG +
Sbjct: 153 ETKDTREEAVQEVILGRLRQQG 174
>gi|171690334|ref|XP_001910092.1| hypothetical protein [Podospora anserina S mat+]
gi|170945115|emb|CAP71226.1| unnamed protein product [Podospora anserina S mat+]
Length = 1993
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 23/165 (13%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W PG ++ IA + ++ V W L +
Sbjct: 1164 SPTGSGKTVAAELAMWWAFREHPGSKVVYIAPMKALVRE----RVKDWGDRLAKPLGLRL 1219
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-- 200
L+ + + + + I + + R++ + V DE
Sbjct: 1220 VELTGDNTPDTRTIQDADIIITTPEKWDGISRSWQTRG-------YVRKVSLVVIDEIHL 1272
Query: 201 -SGTPDIINKSILG-----FFTELNPNRFWIM---TSNTRRLNGW 236
+G I + I+ + N R M +N L W
Sbjct: 1273 LAGDRGPILEIIVSRMNYIAASTKNAVRLLGMSTACANATDLGNW 1317
>gi|23335598|ref|ZP_00120832.1| hypothetical protein Blon03000707 [Bifidobacterium longum DJO10A]
gi|189440021|ref|YP_001955102.1| phage terminase large subunit [Bifidobacterium longum DJO10A]
gi|189428456|gb|ACD98604.1| Phage terminase large subunit [Bifidobacterium longum DJO10A]
Length = 477
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 26/230 (11%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
WQ + + ++ T+ R GKT W+ + + PGM I+
Sbjct: 37 DVWQRQINRIILAKSADGFWSARNTVLSI----PRQTGKTYDIGWVAIHRAARTPGMRIV 92
Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
A + +K+T S+ EM L G + + G + +
Sbjct: 93 WTAQHFSVIKDTFE-------SLCAIVLRPEMSGLVDPDHG-----ISLAAGKEEIRFRN 140
Query: 172 TCRTYSEERPD-TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-NPNRFWIMTSN 229
R + R G + DEA D S+L NP ++ T
Sbjct: 141 GSRIFFRARERGALRGV--KKIALLVIDEAQHLSDSAMASMLPTQNRAWNPQTIYMGTPP 198
Query: 230 -TRRLNGWFYDIFNIPLEDWKRYQI-----DTRTVEGIDSGFHEGIISRY 273
R F + + + R + +D Y
Sbjct: 199 GPRDNGEAFTRLRDKARAGRTHSTLYVEFTADRDADPLDRQQWRKANPSY 248
>gi|117926000|ref|YP_866617.1| helicase domain-containing protein [Magnetococcus sp. MC-1]
gi|117609756|gb|ABK45211.1| helicase domain protein [Magnetococcus sp. MC-1]
Length = 1170
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 69/249 (27%), Gaps = 53/249 (21%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA--------------- 81
PWG + ++++ D + +N P + +
Sbjct: 67 PWGFDAPGPDFKLGVEAFRIQLAHLFDPMMAVHTSNVEPLPHQISAVYESMLPRQPLRYV 126
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
++ G GKT + ++ L+ I+ +A + V +W + +
Sbjct: 127 LADDPGAGKTIMAGLLIRELLMRSDAKRILIVAPG---------SLVEQWQDEMYEKFGV 177
Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP--HNTHGMAVFNDE 199
E S + + S +H + R R D F H+ + + DE
Sbjct: 178 EFTVFSRE-----LDQVSLSGNAFDEHDRLIARLDQLSRNDEFQEKLAHSEWDL-IIVDE 231
Query: 200 -----ASGTPDIINKS---ILGFFTELNPNRFWIMTSNTRR-------------LNGWFY 238
AS + ++ LG F +MT+ FY
Sbjct: 232 AHKMSASYYGQKVKETKRFKLGKLLGSVSRHFLLMTATPHNGKETDFQLFLSLLDGDRFY 291
Query: 239 DIFNIPLED 247
F
Sbjct: 292 GKFREGAHR 300
>gi|259418958|ref|ZP_05742875.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B]
gi|259345180|gb|EEW57034.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B]
Length = 478
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 50/298 (16%), Positives = 90/298 (30%), Gaps = 42/298 (14%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNTLWAEVSKWL 132
I GRG GKT A W+ S G + + + Q+++ + S L
Sbjct: 86 ILGGRGAGKTRAGA---EWVRSEVEGAEPFGIGRARRMALVGETYDQVRDVMIHGDSGIL 142
Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
+ P E ++ T + +S P+ GP
Sbjct: 143 ACSPPDRRPEWRA---------------GERRLVWPNGATAQAFSASDPEALRGPQFD-- 185
Query: 193 MAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
A + DE + + R + T+ R + P
Sbjct: 186 -AAWVDELAKWRRAQDAWDMLQFALRLGAAPRVCVTTTP--RNVPLLKQLLESPSTV-TT 241
Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
+ + GF + +RYG S +AR E+ G +E+ R+
Sbjct: 242 HAPTEANRANLAPGFLTEVRARYG-GSRLARQELDGVMLADVDGALWTSGMLEQLQRRDR 300
Query: 311 IDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC-PVG 364
+++ D A +G D ++ I +W A ++ + +G P G
Sbjct: 301 --PPLDRIVVAVDPSVSAHKGSDACGIIVAGAQTQGPISEWRAYVLADHTVQGLGPTG 356
>gi|126433456|ref|YP_001069147.1| hypothetical protein Mjls_0847 [Mycobacterium sp. JLS]
gi|126233256|gb|ABN96656.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length = 549
Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 6/162 (3%)
Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
+ +A+ H + + ++ + + + G G GKT L A ++ R G + +
Sbjct: 198 EDASDALTEH-QAVILDAIRQLNRVEVRGGAGSGKTFL-AMEQARRLAQR-GQRVALVCY 254
Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
S L + L W + E +L + + +
Sbjct: 255 SHG-LASYLERIAETWPRRQQPAYVGEFHALGVQWGAPEGPDEAVRTEETVRFWEHDLPL 313
Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
+ H + DEA D +L +
Sbjct: 314 QMADLAAQLEPGHRFDS--IVVDEAQDFADAWWDPLLAALRD 353
>gi|213402789|ref|XP_002172167.1| antiviral helicase SLH1 [Schizosaccharomyces japonicus yFS275]
gi|212000214|gb|EEB05874.1| antiviral helicase SLH1 [Schizosaccharomyces japonicus yFS275]
Length = 1949
Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 45/154 (29%), Gaps = 20/154 (12%)
Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCA--------ISAGRGIGKTTLNAWMMLWLISTRP 106
Q +E + S N F I A G GKT W P
Sbjct: 1125 QNPVLEEICAKRFSFFNAVQSQFFHTVYHTPTNVFIGAPTGSGKTMAAELATWWAFREHP 1184
Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI-D 165
G ++ IA + +K + W + L M L+ S ++ + I
Sbjct: 1185 GSKVVYIAPMKALVKE----RLKDWGARLVEPMHINMIELTGDTSPDSKTIMGADIIITT 1240
Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
+ + R + + + + V DE
Sbjct: 1241 PEKWDGITRNWRTRK-------YVQNVSLVIIDE 1267
>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
Length = 1721
Score = 38.6 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 10/125 (8%)
Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
G GKT ++L L S P I+ A + + N L +S + P R E++ +
Sbjct: 1332 GTGKTETILSIILSLQSHFPDSRILLTAPTHNAVDNVLRRYLSLNPTHPPLRISTEIRKV 1391
Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV-----G-----PHNTHGMAVF 196
S + + + + T + + V G N V
Sbjct: 1392 SPDVTPYTLDAMAGIELNTLHSRAETTKAKKRVKAAKIVFSTCIGSSLGLLRNEMFDIVI 1451
Query: 197 NDEAS 201
DEAS
Sbjct: 1452 IDEAS 1456
>gi|85709622|ref|ZP_01040687.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1]
gi|85688332|gb|EAQ28336.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1]
Length = 441
Score = 38.6 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 43/251 (17%), Positives = 81/251 (32%), Gaps = 30/251 (11%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
I AGRG GKT A + + + I +++S + + + S L+ P
Sbjct: 55 IMAGRGFGKTRAGAEWVRSIAESHSEARIALVSSSLAEARAVMVEGESGLLACSP----- 109
Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA- 200
E S+ YS P+ GP +H + DE
Sbjct: 110 ----------PDRRPEFEPSLRRVRFPNGAEAHLYSAGEPEALRGPQFSHA---WCDEVG 156
Query: 201 ------SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
S + ++G +P +T+ R + + + +
Sbjct: 157 KWPISHSRATRAWDNLLMGLRLGDDPRIA--VTTTPRAVPLVQRLLKQETSQATAVTRGS 214
Query: 255 TRT-VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
T + + F E I + S + R EI G+ + + +E++ EA
Sbjct: 215 TYDNSANLPARFLEAIADEF-AGSQLGRQEIEGELIEDIEGALWSRSLLEQS-KEEAGPP 272
Query: 314 LYAPLIMGCDI 324
+ +++G D
Sbjct: 273 GFRRIVIGVDP 283
>gi|315654463|ref|ZP_07907371.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
gi|315491498|gb|EFU81115.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
Length = 424
Score = 38.6 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 2/160 (1%)
Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT-TLNAWMMLWLISTRPGMSIICIANSET 118
+ + + + P + AI +G+GKT T W+ L P M + A++
Sbjct: 11 DYLPRYLDEELRELFPQLPAIAIDGAKGVGKTETAQRWVEHVLALDNPEMGQLIAADTVN 70
Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
QL + +W P P+ + + H
Sbjct: 71 QLTKYATTCIDEWQKYPPVWDAVRRLVDQQTPNRFLLTGSATPVSGVDTHSGAGRIASLR 130
Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
RP + +T + SG +I ++I G T+
Sbjct: 131 LRPLSLAERPSTSPRVFISRLFSGDAEISGETIFG-LTDY 169
>gi|67611038|ref|XP_667129.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54658236|gb|EAL36904.1| hypothetical protein Chro.80234 [Cryptosporidium hominis]
Length = 991
Score = 38.6 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 73/237 (30%), Gaps = 50/237 (21%)
Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
GK + + + Q ++ D+ N+N +++AGRG GK+ + L
Sbjct: 263 EIGKVISNCITFDQAQT-VLKMADIIIQKNMNAI------ISLTAGRGRGKSAALG-LSL 314
Query: 100 WLISTRPGMSIICIANSETQLKNTL-WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
++ +I A S + + E+ FE+ S +
Sbjct: 315 ACAVSQGFSNIFITAPSAENVLTVFEFIEIGLQSLGYLEHKHFELVRSKTIDSRVGGDFS 374
Query: 159 EQSMGIDSKHYTITCR-TYSEERPDTFVGPHNTHGMA-----VFNDEASGTPDIINKSIL 212
+ + R T +P+ + + V DEA+ P I K L
Sbjct: 375 HSVSRLIRVNIFKDHRQTIQYIKPE-------DYHLVSQAEIVVMDEAAAIPLPIVKKFL 427
Query: 213 G------------------FFT----------ELNPNRFWIMTSNTRRLNGWFYDIF 241
G + LN N ++SNT + +F + F
Sbjct: 428 GNHLFIFSSTINGYEGTGRALSLKLINDLKKKSLNNNGNLPISSNTDNQSDYFVNSF 484
>gi|206895210|ref|YP_002247305.1| cobalt import ATP-binding protein CbiO 2 [Coprothermobacter
proteolyticus DSM 5265]
gi|206737827|gb|ACI16905.1| cobalt import ATP-binding protein CbiO 2 [Coprothermobacter
proteolyticus DSM 5265]
Length = 271
Score = 38.6 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 12/156 (7%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLW---AEVSKWLSMLP 136
G G GKTTL + L+ T + I I A + Q+K + E S++
Sbjct: 34 GGNGAGKTTLARVIKGLLLPTSGKVLIDGMEISTAGRDYQIKVGIVFQNPENQIVASVVE 93
Query: 137 HRHWFEMQSLSLHPSGW--YAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGM 193
F ++L L P E +++G+ D +H + + +++ G
Sbjct: 94 EDVAFGPENLGLSPREIKERVESSLKTVGLWDLRHRPVHALSGGQKQRLAIAGILALRPS 153
Query: 194 AVFNDEASGTPDII--NKSILGFFTELNPNRFWIMT 227
+ DEA+ D + + + + N +T
Sbjct: 154 YILFDEATALLDPVGRREVLETALSLANSVGVLWIT 189
>gi|149203834|ref|ZP_01880803.1| Putative large terminase [Roseovarius sp. TM1035]
gi|149142951|gb|EDM30993.1| Putative large terminase [Roseovarius sp. TM1035]
Length = 419
Score = 38.6 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 47/283 (16%), Positives = 83/283 (29%), Gaps = 45/283 (15%)
Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNT-LWAEVSKW 131
I GRG GKT A W+ S G I + + Q++ ++ E S
Sbjct: 27 IMGGRGAGKTRAGA---EWVRSEVEGARPMDSGRCKRIALVGETIDQVREVMIFGE-SGI 82
Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
L+ P E Q+ + +S P+ GP
Sbjct: 83 LACSPPDRRPEWQATR---------------KRLIWPNGAVAQAFSAHDPEGLRGPQFDG 127
Query: 192 GMAVFNDEASGT--PDIINKSIL-GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
+ DE + + G P + + T R G DI P
Sbjct: 128 A---WVDELAKWKRARETWDMLQFGLRLGEAPR---VCVTTTPRNVGVLKDILATPSTVT 181
Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
+ + F + + +RY + + R E+ G + + +E A R
Sbjct: 182 SSAPTEA-NRAHLAESFLDEVRARY-AGTRLGRQELDGLLIDEAEDALWSPAMLEAA--R 237
Query: 309 EAIDDLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHIFDW 348
+ +++ D G D+ ++ + DW
Sbjct: 238 VDTLPEFDRVVVAVDPPVSGHAASDECGIIVVGAITRGPVQDW 280
>gi|145493391|ref|XP_001432691.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399805|emb|CAK65294.1| unnamed protein product [Paramecium tetraurelia]
Length = 733
Score = 38.6 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 28 FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA-VDVHCHSNVNNSNPTIFKCAISAGR 86
F F+ G + + ++ F+ W E + A + V+ N + AI+
Sbjct: 317 FDAFLEEQGDQGDEEQAVDKFTFNW-WCKEGIRANIAKIRQEFVDYHNLKPIRIAITGPP 375
Query: 87 GIGKTTLNAWMMLWLISTRPGMSIIC------IANSETQLKNTL 124
GIGK+T+ + + + + + QLK L
Sbjct: 376 GIGKSTIANQISTYFSIPHITIKELIQEYLNQTSEEVEQLKTNL 419
>gi|145486706|ref|XP_001429359.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124396451|emb|CAK61961.1| unnamed protein product [Paramecium tetraurelia]
Length = 733
Score = 38.6 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 28 FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA-VDVHCHSNVNNSNPTIFKCAISAGR 86
F F+ G + + ++ F+ W E + A + V+ N + AI+
Sbjct: 317 FDAFLEEQGDQGDEEQAVDKFTFNW-WCKEGIRANIAKIRQEFVDYHNLKPIRIAITGPP 375
Query: 87 GIGKTTLNAWMMLWLISTRPGMSIIC------IANSETQLKNTL 124
GIGK+T+ + + + + + QLK L
Sbjct: 376 GIGKSTIANQISTYFSIPHITIKELIQEYLNQTSEEVEQLKTNL 419
>gi|16127022|ref|NP_421586.1| hypothetical protein CC_2790 [Caulobacter crescentus CB15]
gi|221235816|ref|YP_002518253.1| phage DNA packaging protein [Caulobacter crescentus NA1000]
gi|13424390|gb|AAK24754.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220964989|gb|ACL96345.1| phage DNA packaging protein [Caulobacter crescentus NA1000]
Length = 567
Score = 38.2 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 77/272 (28%), Gaps = 38/272 (13%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
GRG GKT A + W P ++I + ++ M+ +
Sbjct: 199 GGRGAGKTFAGARWITWNALAYPSQALI--GPTLHDVREV----------MIEGPSGLKA 246
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNTHGMAVFNDEAS 201
+ W E S +S E P++ G H + DE
Sbjct: 247 MGGPAYRPRW-----EASRRRLVWPNGAVAYAFSAEDPESLRGPQFHAA-----WADEFC 296
Query: 202 GTPDIINKSIL---GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
P + G +P T R +
Sbjct: 297 AWPKPAETLAMLRFGLRLGEDPRLVVTTTPKPHRA----LKTLMAEPGVALTRAGTSANA 352
Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
+ F + S YG + +A E+ G + + F + +R A D +
Sbjct: 353 GNLAPAFLRTLASLYG-GTRLAAQELDGVVVETDGGLFRAEDLARCRAARPARLDR---V 408
Query: 319 IMGCD-IAGEGGDKT--VVVFRRGNIIEHIFD 347
++ D A GD VVV RR + + D
Sbjct: 409 VVAVDPPATATGDACGIVVVGRRDDRAFVLAD 440
>gi|307294267|ref|ZP_07574111.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum
L-1]
gi|306880418|gb|EFN11635.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum
L-1]
Length = 438
Score = 38.2 bits (87), Expect = 2.0, Method: Composition-based stats.
Identities = 39/258 (15%), Positives = 80/258 (31%), Gaps = 28/258 (10%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
AGRG GKT A + + P I + + + + + V +L W+
Sbjct: 59 AGRGFGKTRAGAEWVRSVAEGDPAARIALVGATLGEARAVM---VEGASGVLAVSPWWNR 115
Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE---- 199
+ ++ + ++ GP +HG + DE
Sbjct: 116 PAFL------------PALRKLVWRNGAVATLFGAAEAESLRGPQFSHG---WADEIAKW 160
Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
A G + ++G + P + T+ R + + +
Sbjct: 161 AGGQA-AWDNLMMGMRLGIAP--RVLATTTPRPVALVRGLVERNGSDVVVTRGRSADNAS 217
Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
+ GF + YG + + R E+ G+ ++ + +E + A ++
Sbjct: 218 HLADGFLAAMERNYG-GTRLGRQELDGELIEEVEGALWSRDLLERC-RVAHVRGTLARVV 275
Query: 320 MGCD-IAGEGGDKTVVVF 336
+ D A GD +V
Sbjct: 276 VAVDPPASVHGDACGIVV 293
>gi|302560409|ref|ZP_07312751.1| DNA/RNA helicase, superfamily II [Streptomyces griseoflavus Tu4000]
gi|302478027|gb|EFL41120.1| DNA/RNA helicase, superfamily II [Streptomyces griseoflavus Tu4000]
Length = 599
Score = 38.2 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 57/202 (28%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG GK WQ M+ + P F A++ G GKTT
Sbjct: 23 PWGTAGKL-------RAWQQGAMD--------KYIQTQPRDF-LAVATP-GAGKTTFALT 65
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ WL+ + +A +E + K S R ++
Sbjct: 66 LASWLLHHHVVQQVTVVAPTEH---------LKKQWSEAAARIGIKLD------------ 104
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
E S G K Y TY+ H V DE +G ++
Sbjct: 105 -PEYSAGPLGKDYDGVAVTYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 161
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
L F R +T R
Sbjct: 162 CLEAF--EPATRRLALTGTPFR 181
>gi|328773858|gb|EGF83895.1| hypothetical protein BATDEDRAFT_29142 [Batrachochytrium
dendrobatidis JAM81]
Length = 1016
Score = 38.2 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 10/134 (7%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
++A RG GK+ + + +I + S +K L+ + K L +
Sbjct: 280 VTLTASRGRGKSASLGIAIA-SAISYGYSNIFITSPSPENIKT-LFEFIFKGFDALGYEE 337
Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
+ + + ++ + D + +T +P F G + V DE
Sbjct: 338 HLDYDIIQSTNPAFQKSIVRVNFFRDHR------QTIQWIQPSDF-GILAQAELLVI-DE 389
Query: 200 ASGTPDIINKSILG 213
A+ P + K +LG
Sbjct: 390 AAAIPLPVVKKLLG 403
>gi|224586602|ref|YP_002640499.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
gi|224497136|gb|ACN52769.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
Length = 450
Score = 38.2 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDNPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
+ + Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIHTFTTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASIDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D +++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFSSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|255933656|ref|XP_002558207.1| Pc12g14010 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582826|emb|CAP81028.1| Pc12g14010 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 2009
Score = 38.2 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 12/117 (10%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W +PG ++ IA + ++ V W L + ++
Sbjct: 1166 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRE----RVQDWRKRLTRQMGLKL 1221
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
L+ + + + + I + + R++ + V DE
Sbjct: 1222 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRD-------YVRKVSLVIIDE 1271
>gi|308449036|ref|XP_003087834.1| hypothetical protein CRE_16583 [Caenorhabditis remanei]
gi|308252534|gb|EFO96486.1| hypothetical protein CRE_16583 [Caenorhabditis remanei]
Length = 411
Score = 37.8 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 21/183 (11%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
WQ A+ S + + S R +GKT ++ L P +++I
Sbjct: 47 DEWQAGLGRAMLAKRASGLYAAGIGGIII--SICRQVGKTFTIGSIIFALCIIFPKLTVI 104
Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS-GWYAELLEQSMGIDSKHYT 170
A+ S + + +Q + + + + G +
Sbjct: 105 WTAH----------------HSRTSNETFESLQGFAQKRKVAPHIRQIRRVNGQQQITFK 148
Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
R R F G V DEA + + ++ T + N I+
Sbjct: 149 NGSRIMFGARESGF-GRGFAGVDVVVADEAQILGNKALEDMVPA-TNASKNPLIILMGTP 206
Query: 231 RRL 233
R
Sbjct: 207 PRP 209
>gi|319943331|ref|ZP_08017613.1| hypothetical protein HMPREF0551_0459 [Lautropia mirabilis ATCC
51599]
gi|319743146|gb|EFV95551.1| hypothetical protein HMPREF0551_0459 [Lautropia mirabilis ATCC
51599]
Length = 220
Score = 37.8 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 47/166 (28%), Gaps = 15/166 (9%)
Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
WQ A H + AI G GKTTL A + S PG ++
Sbjct: 30 TAWQASPRTAFVDHLMARAGTHAGRPAIIAIDGRSGSGKTTLTAALA----SVVPGAQVL 85
Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS---LHPSGWYAELLEQSMGIDSKH 168
L + +W E E+ + L P W E S+ I +
Sbjct: 86 -------HLDDLIWNEPLYQWDQQLVAALSELHTTGALDLIPHPWREHGREGSIRITAGA 138
Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214
+ + G + H D+ + DI G
Sbjct: 139 PLVIVEG-TGAGLQAIRGLIDLHVWVQTGDDVTEHRDISRDIAEGT 183
>gi|329936550|ref|ZP_08286286.1| DNA or RNA helicases of superfamily II [Streptomyces
griseoaurantiacus M045]
gi|329304065|gb|EGG47947.1| DNA or RNA helicases of superfamily II [Streptomyces
griseoaurantiacus M045]
Length = 611
Score = 37.8 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 38/202 (18%), Positives = 56/202 (27%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG GK WQ M+ P F A++ G GKTT
Sbjct: 35 PWGTAGKL-------RAWQQGAMD--------RYLQQQPRDF-LAVATP-GAGKTTFALT 77
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ WL+ + +A +E + K + R ++
Sbjct: 78 LASWLLHHHVVQQVTVVAPTEH---------LKKQWAEAAARIGIKLD------------ 116
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
E S G + Y TY+ H V DE +G ++
Sbjct: 117 -PEYSAGPLGREYDGVAVTYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 173
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
L F R +T R
Sbjct: 174 CLEAF--EPATRRLALTGTPFR 193
>gi|315446103|ref|YP_004078982.1| nuclease-like protein [Mycobacterium sp. Spyr1]
gi|315264406|gb|ADU01148.1| nuclease-like protein [Mycobacterium sp. Spyr1]
Length = 551
Score = 37.8 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 5/181 (2%)
Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
E V S + ++ + + I G G GKT L L ++++C +
Sbjct: 199 EDAADVLTEQQSVILDAIKLLHRVEIRGGAGSGKTFLAMEQARRLARAGRRVALVCYS-- 256
Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
L + L + W + E L + + +
Sbjct: 257 -HGLASYLERITATWNRRHRPAYVGEFHDLGKQWGAPAGPDESVRNDETVRFWEHDLPSQ 315
Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
H A+ DEA D +L + ++ + +R+
Sbjct: 316 MTRLATQLDPGHRFD--AIVVDEAQDFADAWWDPLLAALKDDETGGLYVFSDEGQRVFDR 373
Query: 237 F 237
F
Sbjct: 374 F 374
>gi|218202744|ref|YP_002364661.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
gi|218164272|gb|ACK74336.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
Length = 450
Score = 37.8 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDNPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
++ + Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIDTFTTYNFTTYDNVLLSKGFIETQEKLY-KDMPTYKARVLLGEWIASIDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D +++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFSSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|154335334|ref|XP_001563907.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 1080
Score = 37.8 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 10/134 (7%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
C ++AGRG GK+ M+ + +I+C A + ++ L+ + L L +R
Sbjct: 305 CVVTAGRGRGKSAALGMMVA-GAIAQGYSNIMCTAPTPENVQT-LFEFAIRGLKELGYRE 362
Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
+ ++L + + ++ + + T + S F DE
Sbjct: 363 RTDFEALQGVSEEFAKCFIRINVFREHRQ---TLQFVSATDTAKFAQAE-----VCVIDE 414
Query: 200 ASGTPDIINKSILG 213
A+ P + K ILG
Sbjct: 415 AAALPLPLVKRILG 428
>gi|328854149|gb|EGG03283.1| hypothetical protein MELLADRAFT_49560 [Melampsora larici-populina
98AG31]
Length = 1103
Score = 37.8 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 10/125 (8%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
A++A RG GK+ + +I + S LK + + K L + +
Sbjct: 290 VALTAARGRGKSAALGLAIT-AAIAHSYSNIFVTSPSPENLKTV-FEFIFKGLDAIGYEE 347
Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
+ W+ + ID Y E + +G V DE
Sbjct: 348 HLDYDIHQSTNPEWH----NCVVRIDIFRQHRQTIQYIEPQDYKVLGQAE----LVVIDE 399
Query: 200 ASGTP 204
A+ P
Sbjct: 400 AAAIP 404
>gi|237794637|ref|YP_002862189.1| putative phage terminase, large subunit [Clostridium botulinum Ba4
str. 657]
gi|229260548|gb|ACQ51581.1| putative phage terminase, large subunit [Clostridium botulinum Ba4
str. 657]
Length = 543
Score = 37.8 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 85 GRGIGKTTLNAWMMLWLISTRPGMS---IICIANSETQLKNTL--WAEVSKWLSMLPHRH 139
GRG GK + + + ++ G + +ANSE Q K + EV L
Sbjct: 94 GRGAGKNGFISALSWYFTTSFHGKRGYNVDIVANSEEQAKTSFDDVYEVIDDNKRLQKAF 153
Query: 140 WFEMQSLSLHPSGWYAEL 157
++ + + + Y +
Sbjct: 154 YYTKEKIVYKKTRSYLKF 171
>gi|322498208|emb|CBZ33283.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 1065
Score = 37.8 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 14/136 (10%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--KWLSMLPH 137
C ++AGRG GK+ + + +IIC A + ++ + K L
Sbjct: 287 CVVTAGRGRGKSAALGMTIA-GAIAQGYSNIICTAPTPENVQTLFEFAIRGLKELGYRER 345
Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
+ +Q +S + + + + + T + +
Sbjct: 346 TDFEALQGVSEEFAKCFIRINVFREHRQTVQFVSAADTAKFAQAE-----------LCVI 394
Query: 198 DEASGTPDIINKSILG 213
DEA+ P + K ILG
Sbjct: 395 DEAAALPLTLVKRILG 410
>gi|146083626|ref|XP_001464793.1| hypothetical protein [Leishmania infantum JPCM5]
gi|134068887|emb|CAM59821.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 1065
Score = 37.8 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 14/136 (10%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--KWLSMLPH 137
C ++AGRG GK+ + + +IIC A + ++ + K L
Sbjct: 287 CVVTAGRGRGKSAALGMTIA-GAIAQGYSNIICTAPTPENVQTLFEFAIRGLKELGYRER 345
Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
+ +Q +S + + + + + T + +
Sbjct: 346 TDFEALQGVSEEFAKCFIRINVFREHRQTVQFVSAADTAKFAQAE-----------LCVI 394
Query: 198 DEASGTPDIINKSILG 213
DEA+ P + K ILG
Sbjct: 395 DEAAALPLTLVKRILG 410
>gi|5802839|gb|AAD51802.1|AF170560_1 SdrA [Streptomyces coelicolor A3(2)]
Length = 597
Score = 37.8 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 57/202 (28%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG GK WQ ME P F A++ G GKTT
Sbjct: 22 PWGTAGKL-------RAWQQGAME--------KYLQDQPRDF-LAVATP-GAGKTTFALT 64
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ WL+ + +A +E + K + R ++
Sbjct: 65 LASWLLHHHVVQQVTVVAPTEH---------LKKQWAEAAARIGIKLD------------ 103
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
E S G S+ Y TY+ H V DE +G ++
Sbjct: 104 -PEYSAGPLSREYQGIAITYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 160
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
L F R +T R
Sbjct: 161 CLEAF--EPATRRLALTGTPFR 180
>gi|21221383|ref|NP_627162.1| hypothetical protein SCO2936 [Streptomyces coelicolor A3(2)]
gi|256787436|ref|ZP_05525867.1| hypothetical protein SlivT_23354 [Streptomyces lividans TK24]
gi|289771334|ref|ZP_06530712.1| hypothetical protein SSPG_04602 [Streptomyces lividans TK24]
gi|5531385|emb|CAB51017.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|289701533|gb|EFD68962.1| hypothetical protein SSPG_04602 [Streptomyces lividans TK24]
Length = 598
Score = 37.8 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 57/202 (28%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG GK WQ ME P F A++ G GKTT
Sbjct: 22 PWGTAGKL-------RAWQQGAME--------KYLQDQPRDF-LAVATP-GAGKTTFALT 64
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ WL+ + +A +E + K + R ++
Sbjct: 65 LASWLLHHHVVQQVTVVAPTEH---------LKKQWAEAAARIGIKLD------------ 103
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
E S G S+ Y TY+ H V DE +G ++
Sbjct: 104 -PEYSAGPLSREYQGIAITYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 160
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
L F R +T R
Sbjct: 161 CLEAF--EPATRRLALTGTPFR 180
>gi|50312271|ref|XP_456167.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645303|emb|CAG98875.1| KLLA0F24398p [Kluyveromyces lactis]
Length = 1055
Score = 37.4 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 34/212 (16%), Positives = 66/212 (31%), Gaps = 30/212 (14%)
Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
P+ QEL E+ + E V L S+ +
Sbjct: 221 PKDDEEISPKNQELKELKVSLEDV--------------QPAGSLVALSKTVNQAHAILTF 266
Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
+D +N++ A++AGRG GK+ + + +I + S LK
Sbjct: 267 IDAISEKTLNST------VALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSPENLK 319
Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
L+ + K L ++ + + + ++ + + +
Sbjct: 320 T-LFEFIFKGFDALGYQEHIDYDIIQSTNPSFNKAIVRVDIKREHRQTIQYIIPNDSH-- 376
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
+G V DEA+ P + K +LG
Sbjct: 377 --VLGQAE----LVVIDEAAAIPLPLVKKLLG 402
>gi|313233376|emb|CBY24491.1| unnamed protein product [Oikopleura dioica]
Length = 985
Score = 37.4 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 31/157 (19%)
Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISA------GRGIGKTTLNAWMMLWLISTRPGM 108
Q EF+ D V + T + A+ + G GKT + A ++ + P
Sbjct: 41 QREFVFPDD----FPVRSYQQTAARAALKSNCLVCLPTGAGKTLVAAAVIRNFLDWHPNS 96
Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
I +A W L ++ + + PS + + + +
Sbjct: 97 QAIFVA----------------WTKPLLNQQKEALTRDAGIPSSQSCVINGHTSAKNREE 140
Query: 169 YTITCRT--YSEERPDTFVGP---HNTHGMAVFNDEA 200
+ TCR + + + G + V DEA
Sbjct: 141 WYSTCRLICATPQTINNDAGKNLINMQRIKLVIVDEA 177
>gi|327355898|gb|EGE84755.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
dermatitidis ATCC 18188]
Length = 2024
Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W +PG ++ IA + ++ V W L ++
Sbjct: 1165 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRE----RVHDWRRRLTAPMGLKL 1220
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
L+ + + + + I + + R++ + V DE
Sbjct: 1221 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1270
>gi|239609198|gb|EEQ86185.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
dermatitidis ER-3]
Length = 2024
Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W +PG ++ IA + ++ V W L ++
Sbjct: 1165 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRE----RVHDWRRRLTAPMGLKL 1220
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
L+ + + + + I + + R++ + V DE
Sbjct: 1221 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1270
>gi|261189015|ref|XP_002620920.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
dermatitidis SLH14081]
gi|239591924|gb|EEQ74505.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
dermatitidis SLH14081]
Length = 2024
Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W +PG ++ IA + ++ V W L ++
Sbjct: 1165 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRE----RVHDWRRRLTAPMGLKL 1220
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
L+ + + + + I + + R++ + V DE
Sbjct: 1221 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1270
>gi|171058461|ref|YP_001790810.1| exodeoxyribonuclease V subunit alpha [Leptothrix cholodnii SP-6]
gi|170775906|gb|ACB34045.1| exodeoxyribonuclease V, alpha subunit [Leptothrix cholodnii SP-6]
Length = 739
Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 38/167 (22%)
Query: 48 FSQPHR-----WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
F P WQ + I+ G G GKT A ++ ++
Sbjct: 235 FGGPPAPDRFDWQRSACAIALRGRLAL------------ITGGPGTGKTYTVARLLALVM 282
Query: 103 STRPGM---SIICIANS---ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ P I A + +LK ++ + + + + LP + + L S +
Sbjct: 283 AVHPQPQALRIALAAPTGKAAARLKQSIDSALQQLAAALPGALDWGLLQQRLSQSLTLHK 342
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
LL D++ + R H + DEAS
Sbjct: 343 LLGARP--DTRRFGRDAR-------------HPLEVDLLVVDEASMV 374
>gi|226322130|ref|ZP_03797652.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|226232450|gb|EEH31207.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 18/164 (10%)
Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
+ F G ++ +F +EA+ + +L T N +F +
Sbjct: 157 ERFRG---SNSALIFVNEATTLHKQTLEEVLKRL-RCGQETIIFDT-NPDNPEHYFKTDY 211
Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHN 300
++ + Y T + GF E Y D + + LG++ + F N
Sbjct: 212 IDNIDTFTTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASIDSIFTQIN 270
Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF--RRGNI 341
+ D +++ I D A GGD T + R +
Sbjct: 271 ITQ--------DYVFSSPIAYLDPAFSVGGDNTALCVMERVDDK 306
>gi|212545286|ref|XP_002152797.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
gi|210065766|gb|EEA19860.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
Length = 2022
Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W RPG ++ IA + ++ V W + ++
Sbjct: 1162 SPTGSGKTVACELAMWWAFRERPGSKVVYIAPMKALVRE----RVQDWRKRITTAMGLKL 1217
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
L+ + + + + I + + R++ + V DE
Sbjct: 1218 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1267
>gi|291453805|ref|ZP_06593195.1| hypothetical protein SSHG_04098 [Streptomyces albus J1074]
gi|291356754|gb|EFE83656.1| hypothetical protein SSHG_04098 [Streptomyces albus J1074]
Length = 593
Score = 37.4 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 39/202 (19%), Positives = 57/202 (28%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG GK WQ M+ P F A++ G GKTT
Sbjct: 18 PWGTAGKL-------RAWQQAAMD--------KYVQEQPRDF-LAVATP-GAGKTTFALT 60
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ W++ + +A +E + K + R ++
Sbjct: 61 LASWMLHHHVVQQVTVVAPTEH---------LKKQWAEAAARIGIKLD------------ 99
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
E S G SK Y TY+ H V DE +G ++
Sbjct: 100 -PEYSAGPLSKEYQGVAVTYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 156
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
L F R +T R
Sbjct: 157 CLEAF--EPATRRLALTGTPFR 176
>gi|242815191|ref|XP_002486521.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714860|gb|EED14283.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500]
Length = 2030
Score = 37.4 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
+ G GKT M W RPG ++ IA + ++ V W L ++
Sbjct: 1164 SPTGSGKTVACELAMWWAFRERPGSKVVYIAPMKALVRE----RVQDWRKRLTAAMGLKL 1219
Query: 144 QSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
L+ + + + + I + + R++ + V DE
Sbjct: 1220 VELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRG-------YVRQVSLVIIDE 1269
>gi|294629610|ref|ZP_06708170.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292832943|gb|EFF91292.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 596
Score = 37.4 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 39/202 (19%), Positives = 56/202 (27%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG GK WQ ME P F A++ G GKTT
Sbjct: 20 PWGTAGKL-------RAWQQGAME--------KYLQEQPRDF-LAVATP-GAGKTTFALT 62
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ WL+ + +A +E + K + R ++
Sbjct: 63 LASWLLHHHVVQQVTVVAPTEH---------LKKQWAEAAARVGIKLD------------ 101
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
E S G + Y TY+ H V DE +G ++
Sbjct: 102 -PEYSAGPLGREYDGVAVTYAGVGVRPM--LHRNRVEQRKTLVILDEIHHAGDSKSWGEA 158
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
L F R +T R
Sbjct: 159 CLEAF--EPATRRLALTGTPFR 178
>gi|209544598|ref|YP_002276827.1| hypothetical protein Gdia_2467 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209532275|gb|ACI52212.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 491
Score = 37.4 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 40/199 (20%), Positives = 67/199 (33%), Gaps = 26/199 (13%)
Query: 87 GIGKTTLNAW-MMLWLISTRPGMSII------CIANSETQLKNTLWAEVSKWLSMLPHRH 139
G GK++ W M+L + PG + I NS QL++T V +W +
Sbjct: 32 GSGKSSGCVWEMVLRGLKQAPGPDGVRRSRWAVIRNSYRQLEDTTIRTVHQWFPPMQFGR 91
Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
W PS + + D K I + +RPD + + +E
Sbjct: 92 W--------KPSEHSYTINRLAAQGDEKPAEIELLFRALDRPDQVGNLLSLELTGAWINE 143
Query: 200 ASGTPDIINKSILGFF----TELNPNRFW---IMTSNTRRLNGWFYDIF----NIPLEDW 248
A P + +++ G + + W IM +N +Y F + +
Sbjct: 144 AREVPWAVIEAVQGRVGRYPAKRDGGATWSGIIMDTNPPDAESEWYKFFEEKDHTDAVEA 203
Query: 249 KRYQIDTRTVEGIDSGFHE 267
I TVE F +
Sbjct: 204 IAQVIPGMTVERYARIFKQ 222
>gi|260431843|ref|ZP_05785814.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415671|gb|EEX08930.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 176
Score = 37.0 bits (84), Expect = 4.1, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 11/128 (8%)
Query: 182 DTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
+ G + DEA PD + + R +++++ +G+FY+
Sbjct: 49 ENARGETAD---LIIGDEACFIQPDEALTAFFPM--RRSTGRIFLLSTPNGTRSGYFYET 103
Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPH 299
+ +I R+++ I SD R E L ++ + +
Sbjct: 104 WESDA---NVRRIRARSMDTTREDRLAQIEFDRRTMSDATFRREHLCEWVGAGE-SLLSW 159
Query: 300 NYIEEAMS 307
N +E AM
Sbjct: 160 NTLERAMQ 167
>gi|331245260|ref|XP_003335267.1| nucleolus protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309314257|gb|EFP90848.1| nucleolus protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1092
Score = 36.6 bits (83), Expect = 5.5, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 10/125 (8%)
Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
++A RG GK+ + + +I + S LK L+ + K L+ L +
Sbjct: 291 VTLTASRGRGKSAALGMAIA-VAVAHSYSNIFVTSPSPENLKT-LFEFIFKSLTALGYEE 348
Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
+ W ++ + + + +T +P + V DE
Sbjct: 349 HLDYNVHQSSNPEWKNCIVRVDIFRNHR------QTIQYIQPQDYKVLGQAE--LVVIDE 400
Query: 200 ASGTP 204
A+ P
Sbjct: 401 AAAIP 405
>gi|251783038|ref|YP_002997341.1| terminase large subunit [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391668|dbj|BAH82127.1| terminase large subunit [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 424
Score = 36.6 bits (83), Expect = 5.6, Method: Composition-based stats.
Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 21/222 (9%)
Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
NP I A GRG GK++ A+++ LI P ++ +CI ++ L+ +++ ++ +S
Sbjct: 22 NPKILNIACKGGRGSGKSSNIAFIISRLIIQYP-VNAVCIRKTDNTLEQSVYEQIKWAIS 80
Query: 134 MLPHRHWFEMQS----LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
+F+ ++ P G Y K + ++ +
Sbjct: 81 EQGLERYFKFNKSPLRITYIPRGNYIVFRGAQNPERIKSLKDSRFPFAIGWIEELAEFKT 140
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF---YDIFNIPLE 246
DE I N + G + +F+ + +R W Y+ P
Sbjct: 141 E-------DE---VKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPKN 190
Query: 247 DWKRYQIDTR-TVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
+ T I F + R E LG+
Sbjct: 191 TF--VHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGE 230
>gi|297194112|ref|ZP_06911510.1| type III restriction enzyme, res subunit [Streptomyces
pristinaespiralis ATCC 25486]
gi|297152113|gb|EFH31533.1| type III restriction enzyme, res subunit [Streptomyces
pristinaespiralis ATCC 25486]
Length = 594
Score = 36.3 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 39/202 (19%), Positives = 56/202 (27%), Gaps = 49/202 (24%)
Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
PWG K WQ ME P F A++ G GKTT
Sbjct: 18 PWGTANKL-------RAWQQGAME--------KYLQEQPRDF-LAVATP-GAGKTTFALT 60
Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
+ WL+ + +A +E + K + R ++
Sbjct: 61 LASWLLHHHVVQQVTVVAPTEH---------LKKQWAAAAARIGIKLD------------ 99
Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----NTHGMAVFNDEA--SGTPDIINKS 210
+ S G SK Y TY+ H V DE +G ++
Sbjct: 100 -PDYSAGPLSKEYHGVAVTYAGVGVRPM--LHRNRCEQRKTLVILDEIHHAGDSKSWGEA 156
Query: 211 ILGFFTELNPNRFWIMTSNTRR 232
L F R +T R
Sbjct: 157 CLEAF--EPATRRLALTGTPFR 176
>gi|94990333|ref|YP_598433.1| terminase large subunit [Streptococcus phage 10270.2]
gi|94994256|ref|YP_602354.1| Terminase large subunit [Streptococcus phage 10750.2]
gi|94543841|gb|ABF33889.1| Terminase large subunit [Streptococcus phage 10270.2]
gi|94547764|gb|ABF37810.1| Terminase large subunit [Streptococcus phage 10750.2]
Length = 432
Score = 35.9 bits (81), Expect = 9.4, Method: Composition-based stats.
Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 21/222 (9%)
Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
NP I A GRG GK++ A+++ LI P ++ +CI ++ L+ +++ ++ +S
Sbjct: 30 NPQILNIACKGGRGSGKSSNIAFIISRLIIQYP-VNAVCIRKTDNTLEQSVYEQIKWAIS 88
Query: 134 MLPHRHWFEMQS----LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
+F+ ++ P G Y K + ++ +
Sbjct: 89 EQGLERYFKFNKSPLRITYIPRGNYIVFRGAQNPERIKSLKDSRFPFAIGWIEELAEFKT 148
Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF---YDIFNIPLE 246
DE I N + G + +F+ + +R W Y+ P
Sbjct: 149 E-------DE---VKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSN 198
Query: 247 DWKRYQIDTR-TVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
+ T I F + R E LG+
Sbjct: 199 TF--VHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGE 238
>gi|217970261|ref|YP_002355495.1| exodeoxyribonuclease V, subunit alpha [Thauera sp. MZ1T]
gi|217507588|gb|ACK54599.1| exodeoxyribonuclease V, alpha subunit [Thauera sp. MZ1T]
Length = 683
Score = 35.9 bits (81), Expect = 10.0, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 22/144 (15%)
Query: 79 KCAI-SAGRGIGKTTLNAWMMLWLISTRPGM---SIICIANSETQLKNTLWAEVSKWLSM 134
+ +I + G G GKT A ++ +++T P I A + K +
Sbjct: 217 RLSILTGGPGTGKTYTAARLLALMLATHPAPERLRIALAAPT------------GKAAAR 264
Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM- 193
L +Q+L G + +L + I + + F H + +
Sbjct: 265 LRQAIDGSLQALQRSL-GGHLDLAALTRRIGAARTLHALLGARPD-TRRFR-HHAGNPLD 321
Query: 194 --AVFNDEASGTPDIINKSILGFF 215
V DEAS + ++L
Sbjct: 322 VDVVIVDEASMVHLEMMAALLEAL 345
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.307 0.129 0.365
Lambda K H
0.267 0.0392 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,576,772,568
Number of Sequences: 14124377
Number of extensions: 258892913
Number of successful extensions: 679973
Number of sequences better than 10.0: 653
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 557
Number of HSP's that attempted gapping in prelim test: 678964
Number of HSP's gapped (non-prelim): 829
length of query: 367
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 227
effective length of database: 2,865,380,850
effective search space: 650441452950
effective search space used: 650441452950
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 82 (36.3 bits)